7TMN - Header Asymmetric Unit

HEADER HYDROLASE (METALLOPROTEINASE) 29-JUN-87 7TMN

TITLE SLOW-AND FAST-BINDING INHIBITORS OF THERMOLYSIN DISPLAY TITLE 2 DIFFERENT MODES OF BINDING. CRYSTALLOGRAPHIC ANALYSIS OF TITLE 3 EXTENDED PHOSPHONAMIDATE TRANSITION-STATE ANALOGUES

COMPND MOL_ID: 1; COMPND 2 MOLECULE:; COMPND 3 CHAIN: I; COMPND 4 EC: 3.4.24.27; COMPND 5 ENGINEERED: YES

SOURCE MOL_ID: 1

KEYWDS HYDROLASE (METALLOPROTEINASE)

EXPDTA THEORETICAL MODEL

AUTHOR H.M.HOLDEN,D.E.TRONRUD,A.F.MONZINGO,L.H.WEAVER,B.W.MATTHEWS

REVDAT 4 01-APR-03 7TMN 1 JRNL REVDAT 3 08-MAR-95 7TMN 1 COMPND REVDAT 2 15-OCT-94 7TMN 1 COMPND EXPDTA REVDAT 1 09-JAN-89 7TMN 0

JRNL AUTH H.M.HOLDEN,D.E.TRONRUD,A.F.MONZINGO,L.H.WEAVER, JRNL AUTH 2 B.W.MATTHEWS JRNL TITL SLOW- AND FAST-BINDING INHIBITORS OF THERMOLYSIN JRNL TITL 2 DISPLAY DIFFERENT MODES OF BINDING: JRNL TITL 3 CRYSTALLOGRAPHIC ANALYSIS OF EXTENDED JRNL TITL 4 PHOSPHONAMIDATE TRANSITION-STATE ANALOGUES. JRNL REF BIOCHEMISTRY V. 26 8542 1987 JRNL REFN ASTM BICHAW US ISSN 0006-2960

REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.E.TRONRUD,H.M.HOLDEN,B.W.MATTHEWS REMARK 1 TITL STRUCTURES OF TWO THERMOLYSIN-INHIBITOR COMPLEXES REMARK 1 TITL 2 THAT DIFFER BY A SINGLE HYDROGEN BOND REMARK 1 REF SCIENCE V. 235 571 1987 REMARK 1 REFN ASTM SCIEAS US ISSN 0036-8075 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.E.TRONRUD,A.F.MONZINGO,B.W.MATTHEWS REMARK 1 TITL CRYSTALLOGRAPHIC STRUCTURAL ANALYSIS OF REMARK 1 TITL 2 PHOSPHORAMIDATES AS INHIBITORS AND REMARK 1 TITL 3 TRANSITION-STATE ANALOGS OF THERMOLYSIN REMARK 1 REF EUR.J.BIOCHEM. V. 157 261 1986 REMARK 1 REFN ASTM EJBCAI IX ISSN 0014-2956 REMARK 1 REFERENCE 3 REMARK 1 AUTH A.F.MONZINGO,B.W.MATTHEWS REMARK 1 TITL BINDING OF N-CARBOXYMETHYL DIPEPETIDE INHIBITORS REMARK 1 TITL 2 TO THERMOLYSIN DETERMINED BY X-RAY REMARK 1 TITL 3 CRYSTALLOGRAPHY. A NOVEL CLASS OF TRANSITION-STATE REMARK 1 TITL 4 ANALOGUES FOR ZINC PEPTIDASES REMARK 1 REF BIOCHEMISTRY V. 23 5724 1984 REMARK 1 REFN ASTM BICHAW US ISSN 0006-2960 REMARK 1 REFERENCE 4 REMARK 1 AUTH D.G.HANGAUER,A.F.MONZINGO,B.W.MATTHEWS REMARK 1 TITL AN INTERACTIVE COMPUTER GRAPHICS STUDY OF REMARK 1 TITL 2 THERMOLYSIN-CATALYZED PEPTIDE CLEAVAGE AND REMARK 1 TITL 3 INHIBITION BY N-CARBOXYMETHYL DIPEPTIDES REMARK 1 REF BIOCHEMISTRY V. 23 5730 1984 REMARK 1 REFN ASTM BICHAW US ISSN 0006-2960 REMARK 1 REFERENCE 5 REMARK 1 AUTH M.A.HOLMES,D.E.TRONRUD,B.W.MATTHEWS REMARK 1 TITL STRUCTURAL ANALYSIS OF THE INHIBITION OF REMARK 1 TITL 2 THERMOLYSIN BY AN ACTIVE-SITE-DIRECTED REMARK 1 TITL 3 IRREVERSIBLE INHIBITOR REMARK 1 REF BIOCHEMISTRY V. 22 236 1983 REMARK 1 REFN ASTM BICHAW US ISSN 0006-2960 REMARK 1 REFERENCE 6 REMARK 1 AUTH A.F.MONZINGO,B.W.MATTHEWS REMARK 1 TITL STRUCTURE OF A MERCAPTAN-THERMOLYSIN COMPLEX REMARK 1 TITL 2 ILLUSTRATES MODE OF INHIBITION OF ZINC PROTEASES REMARK 1 TITL 3 BY SUBSTRATE-ANALOGUE MERCAPTANS REMARK 1 REF BIOCHEMISTRY V. 21 3390 1982 REMARK 1 REFN ASTM BICHAW US ISSN 0006-2960 REMARK 1 REFERENCE 7 REMARK 1 AUTH M.A.HOLMES,B.W.MATTHEWS REMARK 1 TITL STRUCTURE OF THERMOLYSIN REFINED AT 1.6 ANGSTROMS REMARK 1 TITL 2 RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 160 623 1982 REMARK 1 REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 1 REFERENCE 8 REMARK 1 AUTH M.A.HOLMES,B.W.MATTHEWS REMARK 1 TITL BINDING OF HYDROXAMIC ACID INHIBITORS TO REMARK 1 TITL 2 CRYSTALLINE THERMOLYSIN SUGGESTS A PENTACOORDINATE REMARK 1 TITL 3 ZINC INTERMEDIATE IN CATALYSIS REMARK 1 REF BIOCHEMISTRY V. 20 6912 1981 REMARK 1 REFN ASTM BICHAW US ISSN 0006-2960 REMARK 1 REFERENCE 9 REMARK 1 AUTH M.C.BOLOGNESI,B.W.MATTHEWS REMARK 1 TITL BINDING OF THE BIPRODUCT ANALOG L-BENZYLSUCCINIC REMARK 1 TITL 2 ACID TO THERMOLYSIN DETERMINED BY X-RAY REMARK 1 TITL 3 CRYSTALLOGRAPHY REMARK 1 REF J.BIOL.CHEM. V. 254 634 1979 REMARK 1 REFN ASTM JBCHA3 US ISSN 0021-9258 REMARK 1 REFERENCE 10 REMARK 1 AUTH W.R.KESTER,B.W.MATTHEWS REMARK 1 TITL COMPARISON OF THE STRUCTURES OF CARBOXYPEPTIDASE A REMARK 1 TITL 2 AND THERMOLYSIN REMARK 1 REF J.BIOL.CHEM. V. 252 7704 1977 REMARK 1 REFN ASTM JBCHA3 US ISSN 0021-9258 REMARK 1 REFERENCE 11 REMARK 1 AUTH L.H.WEAVER,W.R.KESTER,B.W.MATTHEWS REMARK 1 TITL A CRYSTALLOGRAPHIC STUDY OF THE COMPLEX OF REMARK 1 TITL 2 PHOSPHORAMIDON WITH THERMOLYSIN. A MODEL FOR THE REMARK 1 TITL 3 PRESUMED CATALYTIC TRANSITION STATE AND FOR THE REMARK 1 TITL 4 BINDING OF EXTENDED SUBSTRATES REMARK 1 REF J.MOL.BIOL. V. 114 119 1977 REMARK 1 REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 1 REFERENCE 12 REMARK 1 AUTH W.R.KESTER,B.W.MATTHEWS REMARK 1 TITL CRYSTALLOGRAPHIC STUDY OF THE BINDING OF DIPEPTIDE REMARK 1 TITL 2 INHIBITORS TO THERMOLYSIN. IMPLICATIONS FOR THE REMARK 1 TITL 3 MECHANISM OF CATALYSIS REMARK 1 REF BIOCHEMISTRY V. 16 2506 1977 REMARK 1 REFN ASTM BICHAW US ISSN 0006-2960 REMARK 1 REFERENCE 13 REMARK 1 AUTH F.W.DAHLQUIST,J.W.LONG,W.L.BIGBEE REMARK 1 TITL ROLE OF CALCIUM IN THE THERMAL STABILITY OF REMARK 1 TITL 2 THERMOLYSIN REMARK 1 REF BIOCHEMISTRY V. 15 1103 1976 REMARK 1 REFN ASTM BICHAW US ISSN 0006-2960 REMARK 1 REFERENCE 14 REMARK 1 AUTH P.L.LEVY,M.K.PANGBURN,Y.BURSTEIN,L.H.ERICSSON, REMARK 1 AUTH 2 H.NEURATH,K.A.WALSH REMARK 1 TITL EVIDENCE OF HOMOLOGOUS RELATIONSHIP BETWEEN REMARK 1 TITL 2 THERMOLYSIN AND NEUTRAL PROTEASE A OF BACILLUS REMARK 1 TITL 3 SUBTILIS REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 72 4341 1975 REMARK 1 REFN ASTM PNASA6 US ISSN 0027-8424 REMARK 1 REFERENCE 15 REMARK 1 AUTH L.H.WEAVER,W.R.KESTER,L.F.TENEYCK,B.W.MATTHEWS REMARK 1 TITL THE STRUCTURE AND STABILITY OF THERMOLYSIN REMARK 1 REF EXPERIENTIA,SUPPL. V. 26 31 1976 REMARK 1 REFN ASTM EXPSAU SZ ISSN 0071-335X REMARK 1 REFERENCE 16 REMARK 1 AUTH B.W.MATTHEWS,L.H.WEAVER,W.R.KESTER REMARK 1 TITL THE CONFORMATION OF THERMOLYSIN REMARK 1 REF J.BIOL.CHEM. V. 249 8030 1974 REMARK 1 REFN ASTM JBCHA3 US ISSN 0021-9258 REMARK 1 REFERENCE 17 REMARK 1 AUTH B.W.MATTHEWS,L.H.WEAVER REMARK 1 TITL BINDING OF LANTHANIDE IONS TO THERMOLYSIN REMARK 1 REF BIOCHEMISTRY V. 13 1719 1974 REMARK 1 REFN ASTM BICHAW US ISSN 0006-2960 REMARK 1 REFERENCE 18 REMARK 1 AUTH P.M.COLMAN,J.N.JANSONIUS,B.W.MATTHEWS REMARK 1 TITL THE STRUCTURE OF THERMOLYSIN. AN ELECTRON DENSITY REMARK 1 TITL 2 MAP AT 2.3 ANGSTROMS RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 70 701 1972 REMARK 1 REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 1 REFERENCE 19 REMARK 1 AUTH K.TITANI,M.A.HERMODSON,L.H.ERICSSON,K.A.WALSH, REMARK 1 AUTH 2 H.NEURATH REMARK 1 TITL AMINO-ACID SEQUENCE OF THERMOLYSIN REMARK 1 REF NATURE NEW BIOL. V. 238 35 1972 REMARK 1 REFN ASTM NNBYA7 UK ISSN 0369-4887 REMARK 1 REFERENCE 20 REMARK 1 AUTH B.W.MATTHEWS,J.N.JANSONIUS,P.M.COLMAN, REMARK 1 AUTH 2 B.P.SCHOENBORN,D.DUPORQUE REMARK 1 TITL THREE DIMENSIONAL STRUCTURE OF THERMOLYSIN REMARK 1 REF NATURE NEW BIOL. V. 238 37 1972 REMARK 1 REFN ASTM NNBYA7 UK ISSN 0369-4887 REMARK 1 REFERENCE 21 REMARK 1 AUTH B.W.MATTHEWS,P.M.COLMAN,J.N.JANSONIUS,K.TITANI, REMARK 1 AUTH 2 K.A.WALSH,H.NEURATH REMARK 1 TITL STRUCTURE OF THERMOLYSIN REMARK 1 REF NATURE NEW BIOL. V. 238 41 1972 REMARK 1 REFN ASTM NNBYA7 UK ISSN 0369-4887 REMARK 1 REFERENCE 22 REMARK 1 AUTH B.W.MATTHEWS REMARK 1 TITL THE GAMMA TURN. EVIDENCE FOR A NEW FOLDED REMARK 1 TITL 2 CONFORMATION IN PROTEINS REMARK 1 REF MACROMOLECULES V. 5 818 1972 REMARK 1 REFN ASTM MAMOBX US ISSN 0024-9297 REMARK 1 REFERENCE 23 REMARK 1 AUTH P.M.COLMAN,L.H.WEAVER,B.W.MATTHEWS REMARK 1 TITL RARE EARTHS AS ISOMORPHOUS CALCIUM REPLACEMENTS REMARK 1 TITL 2 FOR PROTEIN CRYSTALLOGRAPHY REMARK 1 REF BIOCHEM.BIOPHYS.RES.COMM. V. 46 1999 1972 REMARK 1 REFN ASTM BBRCA9 US ISSN 0006-291X

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 7TMN COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998

REMARK 5 REMARK 5 CORRECTION. INSERT EXPDTA RECORD. REVISE COMPND RECORD. REMARK 5 15-OCT-94.

REMARK 6 REMARK 6 CORRECTION. CORRECT E.C. CODE ON COMPND RECORD. 08-MAR-95.

REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL

REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.

SEQRES 1 I 4 GLY TPH LEU LEU

MODRES 7TMN TPH I 2 2-AMINO-3-PHENYL-PROPANE-1,1-DIOL GROUP

FTNOTE 1 ATOMS 10 - 16 LIE IN SUBSITE S1. FTNOTE 2 ATOMS 21 - 24 LIE IN SUBSITE S1(PRIME). FTNOTE 3 ATOMS 29 - 32 LIE IN SUBSITE S2(PRIME). FTNOTE 4 ATOMS 8 AND 9 ARE BONDED TO THE ZINC ATOM OF THERMOLYSIN.

HET TPH I 2 12

HETNAM TPH 2-AMINO-3-PHENYL-PROPANE-1,1-DIOL GROUP

FORMUL 1 TPH C9 H13 N O2

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 0.866025 -0.500000 0.000000 0.00000

ORIGX2 0.500000 0.866025 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000