10 20 30 40 50 60 70 80 6XIA - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ISOMERASE(INTRAMOLECULAR OXIDOREDUCTASE)13-SEP-90 6XIA
TITLE REFINEMENT OF GLUCOSE ISOMERASE FROM STREPTOMYCES ALBUS AT 1.65 TITLE 2 ANGSTROMS WITH DATA FROM AN IMAGING PLATE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-XYLOSE ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 5.3.1.5; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES ALBUS; SOURCE 3 ORGANISM_TAXID: 1888
KEYWDS ISOMERASE(INTRAMOLECULAR OXIDOREDUCTASE)
EXPDTA X-RAY DIFFRACTION
AUTHOR Z.DAUTER,H.TERRY,K.S.WILSON
REVDAT 5 13-JUL-11 6XIA 1 VERSN REVDAT 4 24-FEB-09 6XIA 1 VERSN REVDAT 3 01-APR-03 6XIA 1 JRNL REVDAT 2 15-JUL-92 6XIA 1 SHEET REVDAT 1 15-OCT-91 6XIA 0
JRNL AUTH Z.DAUTER,H.TERRY,H.WITZEL,K.S.WILSON JRNL TITL REFINEMENT OF GLUCOSE ISOMERASE FROM STREPTOMYCES ALBUS AT JRNL TITL 2 1.65 A WITH DATA FROM AN IMAGING PLATE. JRNL REF ACTA CRYSTALLOGR.,SECT.B V. 46 833 1990 JRNL REFN ISSN 0108-7681 JRNL PMID 2085424 JRNL DOI 10.1107/S0108768190008059
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Z.DAUTER,M.DAUTER,J.HEMKER,H.WITZEL,K.S.WILSON REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY ANALYSIS OF GLUCOSE REMARK 1 TITL 2 ISOMERASE FROM STREPTOMYCES ALBUS REMARK 1 REF FEBS LETT. V. 247 1 1989 REMARK 1 REFN ISSN 0014-5793
REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 54385 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.141 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3045 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 454 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.012 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.034 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.046 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.011 ; 0.020 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.166 ; 0.200 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.181 ; 0.500 REMARK 3 MULTIPLE TORSION (A) : 0.277 ; 0.500 REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : 0.198 ; 0.500 REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 3.100 ; 5.000 REMARK 3 STAGGERED (DEGREES) : 14.900; 15.000 REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ATOMS WITH AN OCCUPANCY OF 0.0 WERE NOT REMARK 3 LOCATED IN THE ELECTRON DENSITY MAPS.
REMARK 4 REMARK 4 6XIA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 46.95000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.85000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 51.45000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 46.95000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.85000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 51.45000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 46.95000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.85000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 51.45000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 46.95000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.85000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 51.45000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 30730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -97.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 3 CG CD OE1 NE2 REMARK 480 GLU A 7 CG CD OE1 OE2 REMARK 480 ARG A 9 NE CZ NH1 NH2 REMARK 480 ARG A 22 CD NE CZ NH1 NH2 REMARK 480 LYS A 72 CG CD CE NZ REMARK 480 LYS A 84 NZ REMARK 480 GLU A 131 CD OE1 OE2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 131 O HOH A 640 1.61 REMARK 500 OE2 GLU A 131 O HOH A 727 1.88 REMARK 500 OE2 GLU A 69 NZ LYS A 72 2.01 REMARK 500 O HOH A 435 O HOH A 682 2.13 REMARK 500 ND2 ASN A 1 O HOH A 819 2.15 REMARK 500 CD GLU A 131 O HOH A 640 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASN A 1 NH2 ARG A 386 2555 0.86 REMARK 500 OD1 ASN A 1 CZ ARG A 386 2555 1.09 REMARK 500 CG ASN A 1 NH2 ARG A 386 2555 1.14 REMARK 500 N ASN A 1 NH1 ARG A 386 2555 1.51 REMARK 500 OD1 ASN A 1 NE ARG A 386 2555 1.56 REMARK 500 CD ARG A 386 O HOH A 818 2555 1.73 REMARK 500 CB ASN A 1 NH2 ARG A 386 2555 1.88 REMARK 500 N ASN A 1 CZ ARG A 386 2555 2.07 REMARK 500 CG ASN A 1 CZ ARG A 386 2555 2.10 REMARK 500 OD1 ASP A 27 O HOH A 524 3555 2.12 REMARK 500 O HOH A 492 O HOH A 793 3555 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 37 CD GLU A 37 OE2 0.076 REMARK 500 GLU A 44 CD GLU A 44 OE2 0.076 REMARK 500 GLU A 69 CD GLU A 69 OE2 0.076 REMARK 500 GLU A 143 CD GLU A 143 OE2 0.067 REMARK 500 GLU A 180 CD GLU A 180 OE2 0.067 REMARK 500 GLU A 206 CD GLU A 206 OE2 0.079 REMARK 500 GLU A 209 CD GLU A 209 OE2 0.066 REMARK 500 GLU A 293 CD GLU A 293 OE2 0.068 REMARK 500 GLU A 324 CD GLU A 324 OE2 0.069 REMARK 500 GLU A 327 CD GLU A 327 OE2 0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 1 CB - CA - C ANGL. DEV. = 12.7 DEGREES REMARK 500 ARG A 9 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 22 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ASP A 23 CB - CG - OD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ASP A 34 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP A 34 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG A 40 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG A 41 CD - NE - CZ ANGL. DEV. = 10.4 DEGREES REMARK 500 ARG A 67 NE - CZ - NH1 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A 67 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 TYR A 68 CB - CA - C ANGL. DEV. = -13.2 DEGREES REMARK 500 ARG A 73 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 73 NE - CZ - NH2 ANGL. DEV. = -7.4 DEGREES REMARK 500 ARG A 75 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 ASP A 100 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG A 116 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP A 149 CB - CG - OD1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ASP A 149 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG A 151 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 187 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG A 204 CD - NE - CZ ANGL. DEV. = 9.0 DEGREES REMARK 500 ARG A 204 NE - CZ - NH1 ANGL. DEV. = 8.5 DEGREES REMARK 500 ARG A 204 NE - CZ - NH2 ANGL. DEV. = -9.8 DEGREES REMARK 500 ARG A 207 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 TYR A 211 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ASP A 244 CB - CG - OD1 ANGL. DEV. = 7.7 DEGREES REMARK 500 ARG A 258 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG A 265 NE - CZ - NH2 ANGL. DEV. = -7.9 DEGREES REMARK 500 ASP A 272 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG A 283 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 283 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 307 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ASP A 322 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 330 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 330 NE - CZ - NH2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG A 339 CD - NE - CZ ANGL. DEV. = -10.6 DEGREES REMARK 500 ARG A 339 NH1 - CZ - NH2 ANGL. DEV. = 9.6 DEGREES REMARK 500 ARG A 339 NE - CZ - NH2 ANGL. DEV. = -8.5 DEGREES REMARK 500 ARG A 367 CD - NE - CZ ANGL. DEV. = 13.2 DEGREES REMARK 500 ARG A 367 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 367 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP A 380 CB - CG - OD1 ANGL. DEV. = 8.2 DEGREES REMARK 500 ARG A 386 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 2 61.38 34.56 REMARK 500 THR A 16 -73.12 -82.47 REMARK 500 PHE A 93 -25.83 -140.38 REMARK 500 GLU A 185 109.39 75.64 REMARK 500 ASN A 246 -168.92 -167.36 REMARK 500 LYS A 252 -172.90 -173.19 REMARK 500 ALA A 342 68.08 -152.39 REMARK 500 PHE A 356 -71.41 -153.00 REMARK 500 ARG A 386 -139.47 120.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 75 0.10 SIDE CHAIN REMARK 500 ARG A 204 0.14 SIDE CHAIN REMARK 500 ARG A 207 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 648 DISTANCE = 10.16 ANGSTROMS REMARK 525 HOH A 813 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH A 822 DISTANCE = 10.24 ANGSTROMS REMARK 525 HOH A 827 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A 828 DISTANCE = 7.41 ANGSTROMS REMARK 525 HOH A 829 DISTANCE = 6.26 ANGSTROMS
DBREF 6XIA A 1 387 UNP P24299 XYLA_STRAL 1 387
SEQRES 1 A 387 ASN TYR GLN PRO THR PRO GLU ASP ARG PHE THR PHE GLY SEQRES 2 A 387 LEU TRP THR VAL GLY TRP GLU GLY ARG ASP PRO PHE GLY SEQRES 3 A 387 ASP ALA THR ARG THR ALA LEU ASP PRO VAL GLU SER VAL SEQRES 4 A 387 ARG ARG LEU ALA GLU LEU GLY ALA HIS GLY VAL THR PHE SEQRES 5 A 387 HIS ASP ASP ASP LEU ILE PRO PHE GLY SER SER ASP SER SEQRES 6 A 387 GLU ARG TYR GLU HIS VAL LYS ARG PHE ARG GLN ALA LEU SEQRES 7 A 387 ASP ASP THR GLY MET LYS VAL PRO MET ALA THR THR ASN SEQRES 8 A 387 LEU PHE THR HIS PRO VAL PHE LYS ASP GLY GLY PHE THR SEQRES 9 A 387 ALA ASN ASP ARG ASP VAL ARG ARG TYR ALA LEU ARG LYS SEQRES 10 A 387 THR ILE ARG ASN ILE ASP LEU ALA VAL GLU LEU GLY ALA SEQRES 11 A 387 GLU THR TYR VAL ALA TRP GLY GLY ARG GLU GLY ALA GLU SEQRES 12 A 387 SER GLY GLY ALA LYS ASP VAL ARG ASP ALA LEU ASP ARG SEQRES 13 A 387 MET LYS GLU ALA PHE ASP LEU LEU GLY GLU TYR VAL THR SEQRES 14 A 387 SER GLN GLY TYR ASP ILE ARG PHE ALA ILE GLU PRO LYS SEQRES 15 A 387 PRO ASN GLU PRO ARG GLY ASP ILE LEU LEU PRO THR VAL SEQRES 16 A 387 GLY HIS ALA LEU ALA PHE ILE GLU ARG LEU GLU ARG PRO SEQRES 17 A 387 GLU LEU TYR GLY VAL ASN PRO GLU VAL GLY HIS GLU GLN SEQRES 18 A 387 MET ALA GLY LEU ASN PHE PRO HIS GLY ILE ALA GLN ALA SEQRES 19 A 387 LEU TRP ALA GLY LYS LEU PHE HIS ILE ASP LEU ASN GLY SEQRES 20 A 387 GLN ASN GLY ILE LYS TYR ASP GLN ASP LEU ARG PHE GLY SEQRES 21 A 387 ALA GLY ASP LEU ARG ALA ALA PHE TRP LEU VAL ASP LEU SEQRES 22 A 387 LEU GLU SER ALA GLY TYR SER GLY PRO ARG HIS PHE ASP SEQRES 23 A 387 PHE LYS PRO PRO ARG THR GLU ASP PHE ASP GLY VAL TRP SEQRES 24 A 387 ALA SER ALA ALA GLY CYS MET ARG ASN TYR LEU ILE LEU SEQRES 25 A 387 LYS GLU ARG ALA ALA ALA PHE ARG ALA ASP PRO GLU VAL SEQRES 26 A 387 GLN GLU ALA LEU ARG ALA SER ARG LEU ASP GLU LEU ALA SEQRES 27 A 387 ARG PRO THR ALA ALA ASP GLY LEU GLN ALA LEU LEU ASP SEQRES 28 A 387 ASP ARG SER ALA PHE GLU GLU PHE ASP VAL ASP ALA ALA SEQRES 29 A 387 ALA ALA ARG GLY MET ALA PHE GLU ARG LEU ASP GLN LEU SEQRES 30 A 387 ALA MET ASP HIS LEU LEU GLY ALA ARG GLY
FORMUL 2 HOH *454(H2 O)
HELIX 1 A LEU A 14 VAL A 17 1 4 HELIX 2 B PRO A 35 LEU A 45 1 11 HELIX 3 C ASP A 64 THR A 81 1 18 HELIX 4 D ARG A 108 GLU A 127 1 20 HELIX 5 E VAL A 150 GLN A 171 1 22 HELIX 6 F VAL A 195 ILE A 202 1 8 HELIX 7 G PHE A 227 TRP A 236 1 10 HELIX 8 H LEU A 264 SER A 276 1 13 HELIX 9 I PHE A 295 ALA A 321 1 27 HELIX 10 J PRO A 323 ALA A 331 1 9 HELIX 11 K LEU A 334 LEU A 337 1 4 HELIX 12 L LEU A 346 ASP A 351 1 6 HELIX 13 M VAL A 361 ALA A 366 1 6 HELIX 14 N PHE A 371 LEU A 383 1 13
SHEET 1 S1 9 ARG A 9 GLY A 13 0 SHEET 2 S1 9 HIS A 48 HIS A 53 -1 N THR A 51 O PHE A 12 SHEET 3 S1 9 LYS A 84 THR A 89 -1 N LYS A 84 O HIS A 48 SHEET 4 S1 9 THR A 132 ALA A 135 -1 N VAL A 134 O ALA A 88 SHEET 5 S1 9 ARG A 176 ILE A 179 -1 N ALA A 178 O TYR A 133 SHEET 6 S1 9 TYR A 211 GLU A 216 -1 N GLY A 212 O PHE A 177 SHEET 7 S1 9 HIS A 242 GLY A 247 -1 N ASP A 244 O PRO A 215 SHEET 8 S1 9 ARG A 283 ASP A 286 -1 N ASP A 286 O LEU A 245 SHEET 9 S1 9 ARG A 9 GLY A 13 -1 N THR A 11 O ARG A 283
CISPEP 1 GLU A 185 PRO A 186 0 9.65
CRYST1 93.900 99.700 102.900 90.00 90.00 90.00 I 2 2 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010650 0.000000 0.000000 0.00000
SCALE2 0.000000 0.010030 0.000000 0.00000
SCALE3 0.000000 0.000000 0.009718 0.00000