10 20 30 40 50 60 70 80 5XIA - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ISOMERASE(INTRAMOLECULAR OXIDOREDUCTASE)05-JUL-89 5XIA
TITLE STRUCTURES OF D-XYLOSE ISOMERASE FROM ARTHROBACTER STRAIN B3728 TITLE 2 CONTAINING THE INHIBITORS XYLITOL AND D-SORBITOL AT 2.5 ANGSTROMS AND TITLE 3 2.3 ANGSTROMS RESOLUTION, RESPECTIVELY
COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-XYLOSE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.3.1.5; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTHROBACTER SP.; SOURCE 3 ORGANISM_TAXID: 1669; SOURCE 4 STRAIN: NRRL B3728
KEYWDS ISOMERASE(INTRAMOLECULAR OXIDOREDUCTASE)
EXPDTA X-RAY DIFFRACTION
AUTHOR K.HENRICK,C.A.COLLYER,D.M.BLOW
REVDAT 5 13-JUL-11 5XIA 1 VERSN REVDAT 4 24-FEB-09 5XIA 1 VERSN REVDAT 3 01-APR-03 5XIA 1 JRNL REVDAT 2 15-JAN-91 5XIA 1 HEADER REVDAT 1 15-APR-90 5XIA 0
JRNL AUTH K.HENRICK,C.A.COLLYER,D.M.BLOW JRNL TITL STRUCTURES OF D-XYLOSE ISOMERASE FROM ARTHROBACTER STRAIN JRNL TITL 2 B3728 CONTAINING THE INHIBITORS XYLITOL AND D-SORBITOL AT JRNL TITL 3 2.5 A AND 2.3 A RESOLUTION, RESPECTIVELY. JRNL REF J.MOL.BIOL. V. 208 129 1989 JRNL REFN ISSN 0022-2836 JRNL PMID 2769749 JRNL DOI 10.1016/0022-2836(89)90092-2
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.HENRICK,D.M.BLOW,H.L.CARRELL,J.P.GLUSKER REMARK 1 TITL COMPARISON OF BACKBONE STRUCTURES OF GLUCOSE ISOMERASE FROM REMARK 1 TITL 2 STREPTOMYCES AND ARTHROBACTER REMARK 1 REF PROTEIN ENG. V. 1 467 1987 REMARK 1 REFN ISSN 0269-2139 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.AKINS,P.BRICK,H.B.JONES,N.HIRAYAMA,P.-C.SHAW,D.M.BLOW REMARK 1 TITL THE CRYSTALLIZATION OF GLUCOSE ISOMERASE FROM ARTHROBACTER REMARK 1 TITL 2 B3728 REMARK 1 REF BIOCHIM.BIOPHYS.ACTA V. 874 375 1986 REMARK 1 REFN ISSN 0006-3002
REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 31019 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.135 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6054 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 575 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.020 ; 0.025 REMARK 3 ANGLE DISTANCE (A) : 0.048 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.055 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.015 ; 0.020 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.160 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.160 ; 0.200 REMARK 3 MULTIPLE TORSION (A) : 0.220 ; 0.200 REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : 17.100; 15.000 REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.940 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.540 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.930 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.980 ; 3.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE CD-NE-CZ ANGLE OF ARG A 289 DEVIATES SIGNIFICANTLY FROM REMARK 3 THE EXPECTED VALUE AND IS LIKELY TO BE INCORRECT.
REMARK 4 REMARK 4 5XIA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.20000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 102.40000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 102.40000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 51.20000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 33890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -180.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 400 REMARK 400 COMPOUND REMARK 400 THERE ARE MAJOR DISCREPANCIES BETWEEN THIS MODEL OF REMARK 400 XYLOSE ISOMERASE AND THAT PRESENTED IN PROTEIN DATA BANK REMARK 400 ENTRY 3XIA (G.K.FARBER ET AL., BIOCHEMISTRY, V. 28, P. REMARK 400 7289 (1989)). THE ALMOST IDENTICAL STRUCTURES OF REMARK 400 ARTHROBACTER AND STREPTOMYCES RUBIGINOSUS XYLOSE REMARK 400 ISOMERASES (K.HENRICK ET AL., PROTEIN. ENG., V. 1, P. 467 REMARK 400 (1987)) AND SEQUENCE HOMOLOGIES SUGGEST THAT 3XIA SHOULD BE REMARK 400 STRUCTURALLY EQUIVALENT.
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 3 CG CD OE1 NE2 REMARK 470 GLN B 3 CG CD OE1 NE2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 289 CD ARG A 289 NE -0.129 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 7 C - N - CA ANGL. DEV. = 16.9 DEGREES REMARK 500 ASP A 8 CB - CG - OD1 ANGL. DEV. = 8.5 DEGREES REMARK 500 PHE A 12 CB - CG - CD1 ANGL. DEV. = -4.8 DEGREES REMARK 500 ASP A 23 CB - CG - OD1 ANGL. DEV. = 10.6 DEGREES REMARK 500 ASP A 23 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ALA A 43 CB - CA - C ANGL. DEV. = 14.0 DEGREES REMARK 500 GLU A 44 N - CA - CB ANGL. DEV. = 12.0 DEGREES REMARK 500 GLU A 44 CA - CB - CG ANGL. DEV. = 15.0 DEGREES REMARK 500 ALA A 43 O - C - N ANGL. DEV. = -9.9 DEGREES REMARK 500 THR A 51 CA - CB - CG2 ANGL. DEV. = 8.6 DEGREES REMARK 500 ARG A 67 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 67 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 108 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 111 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 111 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG A 112 CD - NE - CZ ANGL. DEV. = 18.2 DEGREES REMARK 500 ARG A 112 NE - CZ - NH1 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 112 NE - CZ - NH2 ANGL. DEV. = 10.2 DEGREES REMARK 500 PHE A 113 CB - CG - CD2 ANGL. DEV. = 4.2 DEGREES REMARK 500 PHE A 113 CB - CG - CD1 ANGL. DEV. = -4.3 DEGREES REMARK 500 LEU A 115 CB - CA - C ANGL. DEV. = 11.8 DEGREES REMARK 500 GLU A 127 CA - CB - CG ANGL. DEV. = 18.7 DEGREES REMARK 500 GLU A 127 CG - CD - OE2 ANGL. DEV. = -12.3 DEGREES REMARK 500 ARG A 139 CD - NE - CZ ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG A 139 NH1 - CZ - NH2 ANGL. DEV. = -7.8 DEGREES REMARK 500 ARG A 139 NE - CZ - NH1 ANGL. DEV. = 6.7 DEGREES REMARK 500 TYR A 144 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 TYR A 144 CB - CG - CD1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ASP A 145 CB - CG - OD1 ANGL. DEV. = 8.2 DEGREES REMARK 500 ASP A 145 CB - CG - OD2 ANGL. DEV. = -8.7 DEGREES REMARK 500 ASP A 149 N - CA - CB ANGL. DEV. = 12.1 DEGREES REMARK 500 ASP A 149 CB - CG - OD1 ANGL. DEV. = 9.2 DEGREES REMARK 500 ASP A 155 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 156 CD - NE - CZ ANGL. DEV. = 12.4 DEGREES REMARK 500 ARG A 156 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 158 CD - NE - CZ ANGL. DEV. = 10.6 DEGREES REMARK 500 ARG A 158 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ASP A 170 CB - CG - OD1 ANGL. DEV. = 8.0 DEGREES REMARK 500 ASN A 174 N - CA - CB ANGL. DEV. = 12.6 DEGREES REMARK 500 LEU A 175 CA - CB - CG ANGL. DEV. = 16.3 DEGREES REMARK 500 ARG A 176 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 176 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 GLU A 185 OE1 - CD - OE2 ANGL. DEV. = -7.4 DEGREES REMARK 500 GLU A 185 CG - CD - OE1 ANGL. DEV. = 13.1 DEGREES REMARK 500 THR A 194 CA - CB - CG2 ANGL. DEV. = 10.3 DEGREES REMARK 500 GLU A 203 OE1 - CD - OE2 ANGL. DEV. = -9.8 DEGREES REMARK 500 GLU A 203 CG - CD - OE1 ANGL. DEV. = 14.7 DEGREES REMARK 500 VAL A 211 CA - CB - CG2 ANGL. DEV. = 11.6 DEGREES REMARK 500 GLU A 216 OE1 - CD - OE2 ANGL. DEV. = 9.1 DEGREES REMARK 500 LEU A 235 CB - CA - C ANGL. DEV. = 12.9 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 150 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 16 -73.93 -75.55 REMARK 500 LEU A 57 -62.29 -91.23 REMARK 500 ALA A 62 136.11 -38.41 REMARK 500 PHE A 93 -22.31 -145.82 REMARK 500 GLU A 185 108.96 72.09 REMARK 500 LEU A 192 62.40 60.47 REMARK 500 ARG A 249 67.96 -105.59 REMARK 500 LYS A 252 -169.36 -173.95 REMARK 500 PHE A 364 -84.95 -138.56 REMARK 500 PRO B 6 -29.35 -38.24 REMARK 500 PHE B 93 -24.45 -144.64 REMARK 500 GLU B 185 103.46 66.44 REMARK 500 LEU B 192 60.93 65.55 REMARK 500 HIS B 207 38.46 -96.20 REMARK 500 ASN B 246 -165.58 -166.58 REMARK 500 ARG B 249 74.26 -108.05 REMARK 500 LYS B 252 -168.87 -172.11 REMARK 500 PHE B 364 -76.16 -135.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 HIS B 9 24.1 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 593 DISTANCE = 8.52 ANGSTROMS REMARK 525 HOH A 598 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH A 636 DISTANCE = 5.13 ANGSTROMS REMARK 525 HOH A 638 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH A 640 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A 676 DISTANCE = 5.25 ANGSTROMS REMARK 525 HOH B 422 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH B 423 DISTANCE = 5.24 ANGSTROMS REMARK 525 HOH B 628 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH B 672 DISTANCE = 5.15 ANGSTROMS REMARK 525 HOH B 674 DISTANCE = 5.08 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 399 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 180 OE2 REMARK 620 2 GLU A 216 OE1 97.7 REMARK 620 3 XYL A 400 O2 90.1 86.7 REMARK 620 4 ASP A 244 OD2 94.1 88.8 174.2 REMARK 620 5 ASP A 292 OD1 172.5 82.3 82.4 93.4 REMARK 620 6 GLU A 180 OE1 44.1 138.2 105.9 79.9 138.1 REMARK 620 7 XYL A 400 O4 92.9 164.7 82.2 101.6 85.8 55.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 399 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 244 OD2 REMARK 620 2 ASP B 292 OD1 93.8 REMARK 620 3 XYL B 400 O2 176.2 89.1 REMARK 620 4 XYL B 400 O4 96.7 87.2 80.9 REMARK 620 5 GLU B 216 OE1 98.3 91.1 84.1 165.0 REMARK 620 6 GLU B 180 OE2 95.9 166.4 80.8 82.2 96.9 REMARK 620 N 1 2 3 4 5
REMARK 700 REMARK 700 SHEET REMARK 700 THE TWO SHEETS PRESENTED AS *BAA* AND *BAB* ON SHEET REMARK 700 RECORDS BELOW ARE ACTUALLY EIGHT-STRANDED BETA-BARRELS. REMARK 700 EACH IS REPRESENTED BY A NINE-STRANDED SHEET IN WHICH THE REMARK 700 FIRST AND LAST STRANDS ARE IDENTICAL.
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XYL A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XYL B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 399 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 399
DBREF 5XIA A 2 394 UNP P12070 XYLA_ARTS7 2 394 DBREF 5XIA B 2 394 UNP P12070 XYLA_ARTS7 2 394
SEQADV 5XIA ALA A 31 UNP P12070 LYS 31 CONFLICT SEQADV 5XIA ALA A 64 UNP P12070 GLU 64 CONFLICT SEQADV 5XIA ALA A 79 UNP P12070 LYS 79 CONFLICT SEQADV 5XIA ALA B 31 UNP P12070 LYS 31 CONFLICT SEQADV 5XIA ALA B 64 UNP P12070 GLU 64 CONFLICT SEQADV 5XIA ALA B 79 UNP P12070 LYS 79 CONFLICT
SEQRES 1 A 393 VAL GLN PRO THR PRO ALA ASP HIS PHE THR PHE GLY LEU SEQRES 2 A 393 TRP THR VAL GLY TRP THR GLY ALA ASP PRO PHE GLY VAL SEQRES 3 A 393 ALA THR ARG ALA ASN LEU ASP PRO VAL GLU ALA VAL HIS SEQRES 4 A 393 LYS LEU ALA GLU LEU GLY ALA TYR GLY ILE THR PHE HIS SEQRES 5 A 393 ASP ASN ASP LEU ILE PRO PHE ASP ALA THR ALA ALA GLU SEQRES 6 A 393 ARG GLU LYS ILE LEU GLY ASP PHE ASN GLN ALA LEU ALA SEQRES 7 A 393 ASP THR GLY LEU LYS VAL PRO MET VAL THR THR ASN LEU SEQRES 8 A 393 PHE SER HIS PRO VAL PHE LYS ASP GLY GLY PHE THR SER SEQRES 9 A 393 ASN ASP ARG SER ILE ARG ARG PHE ALA LEU ALA LYS VAL SEQRES 10 A 393 LEU HIS ASN ILE ASP LEU ALA ALA GLU MET GLY ALA GLU SEQRES 11 A 393 THR PHE VAL MET TRP GLY GLY ARG GLU GLY SER GLU TYR SEQRES 12 A 393 ASP GLY SER LYS ASP LEU ALA ALA ALA LEU ASP ARG MET SEQRES 13 A 393 ARG GLU GLY VAL ASP THR ALA ALA GLY TYR ILE LYS ASP SEQRES 14 A 393 LYS GLY TYR ASN LEU ARG ILE ALA LEU GLU PRO LYS PRO SEQRES 15 A 393 ASN GLU PRO ARG GLY ASP ILE PHE LEU PRO THR VAL GLY SEQRES 16 A 393 HIS GLY LEU ALA PHE ILE GLU GLN LEU GLU HIS GLY ASP SEQRES 17 A 393 ILE VAL GLY LEU ASN PRO GLU THR GLY HIS GLU GLN MET SEQRES 18 A 393 ALA GLY LEU ASN PHE THR HIS GLY ILE ALA GLN ALA LEU SEQRES 19 A 393 TRP ALA GLU LYS LEU PHE HIS ILE ASP LEU ASN GLY GLN SEQRES 20 A 393 ARG GLY ILE LYS TYR ASP GLN ASP LEU VAL PHE GLY HIS SEQRES 21 A 393 GLY ASP LEU THR SER ALA PHE PHE THR VAL ASP LEU LEU SEQRES 22 A 393 GLU ASN GLY PHE PRO ASN GLY GLY PRO LYS TYR THR GLY SEQRES 23 A 393 PRO ARG HIS PHE ASP TYR LYS PRO SER ARG THR ASP GLY SEQRES 24 A 393 TYR ASP GLY VAL TRP ASP SER ALA LYS ALA ASN MET SER SEQRES 25 A 393 MET TYR LEU LEU LEU LYS GLU ARG ALA LEU ALA PHE ARG SEQRES 26 A 393 ALA ASP PRO GLU VAL GLN GLU ALA MET LYS THR SER GLY SEQRES 27 A 393 VAL PHE GLU LEU GLY GLU THR THR LEU ASN ALA GLY GLU SEQRES 28 A 393 SER ALA ALA ASP LEU MET ASN ASP SER ALA SER PHE ALA SEQRES 29 A 393 GLY PHE ASP ALA GLU ALA ALA ALA GLU ARG ASN PHE ALA SEQRES 30 A 393 PHE ILE ARG LEU ASN GLN LEU ALA ILE GLU HIS LEU LEU SEQRES 31 A 393 GLY SER ARG SEQRES 1 B 393 VAL GLN PRO THR PRO ALA ASP HIS PHE THR PHE GLY LEU SEQRES 2 B 393 TRP THR VAL GLY TRP THR GLY ALA ASP PRO PHE GLY VAL SEQRES 3 B 393 ALA THR ARG ALA ASN LEU ASP PRO VAL GLU ALA VAL HIS SEQRES 4 B 393 LYS LEU ALA GLU LEU GLY ALA TYR GLY ILE THR PHE HIS SEQRES 5 B 393 ASP ASN ASP LEU ILE PRO PHE ASP ALA THR ALA ALA GLU SEQRES 6 B 393 ARG GLU LYS ILE LEU GLY ASP PHE ASN GLN ALA LEU ALA SEQRES 7 B 393 ASP THR GLY LEU LYS VAL PRO MET VAL THR THR ASN LEU SEQRES 8 B 393 PHE SER HIS PRO VAL PHE LYS ASP GLY GLY PHE THR SER SEQRES 9 B 393 ASN ASP ARG SER ILE ARG ARG PHE ALA LEU ALA LYS VAL SEQRES 10 B 393 LEU HIS ASN ILE ASP LEU ALA ALA GLU MET GLY ALA GLU SEQRES 11 B 393 THR PHE VAL MET TRP GLY GLY ARG GLU GLY SER GLU TYR SEQRES 12 B 393 ASP GLY SER LYS ASP LEU ALA ALA ALA LEU ASP ARG MET SEQRES 13 B 393 ARG GLU GLY VAL ASP THR ALA ALA GLY TYR ILE LYS ASP SEQRES 14 B 393 LYS GLY TYR ASN LEU ARG ILE ALA LEU GLU PRO LYS PRO SEQRES 15 B 393 ASN GLU PRO ARG GLY ASP ILE PHE LEU PRO THR VAL GLY SEQRES 16 B 393 HIS GLY LEU ALA PHE ILE GLU GLN LEU GLU HIS GLY ASP SEQRES 17 B 393 ILE VAL GLY LEU ASN PRO GLU THR GLY HIS GLU GLN MET SEQRES 18 B 393 ALA GLY LEU ASN PHE THR HIS GLY ILE ALA GLN ALA LEU SEQRES 19 B 393 TRP ALA GLU LYS LEU PHE HIS ILE ASP LEU ASN GLY GLN SEQRES 20 B 393 ARG GLY ILE LYS TYR ASP GLN ASP LEU VAL PHE GLY HIS SEQRES 21 B 393 GLY ASP LEU THR SER ALA PHE PHE THR VAL ASP LEU LEU SEQRES 22 B 393 GLU ASN GLY PHE PRO ASN GLY GLY PRO LYS TYR THR GLY SEQRES 23 B 393 PRO ARG HIS PHE ASP TYR LYS PRO SER ARG THR ASP GLY SEQRES 24 B 393 TYR ASP GLY VAL TRP ASP SER ALA LYS ALA ASN MET SER SEQRES 25 B 393 MET TYR LEU LEU LEU LYS GLU ARG ALA LEU ALA PHE ARG SEQRES 26 B 393 ALA ASP PRO GLU VAL GLN GLU ALA MET LYS THR SER GLY SEQRES 27 B 393 VAL PHE GLU LEU GLY GLU THR THR LEU ASN ALA GLY GLU SEQRES 28 B 393 SER ALA ALA ASP LEU MET ASN ASP SER ALA SER PHE ALA SEQRES 29 B 393 GLY PHE ASP ALA GLU ALA ALA ALA GLU ARG ASN PHE ALA SEQRES 30 B 393 PHE ILE ARG LEU ASN GLN LEU ALA ILE GLU HIS LEU LEU SEQRES 31 B 393 GLY SER ARG
HET XYL A 400 10 HET XYL B 400 10 HET MG A 399 1 HET MG B 399 1
HETNAM XYL D-XYLITOL HETNAM MG MAGNESIUM ION
FORMUL 3 XYL 2(C5 H12 O5) FORMUL 5 MG 2(MG 2+) FORMUL 7 HOH *575(H2 O)
HELIX 1 A0 LEU A 14 VAL A 17 5 4 HELIX 2 A1 PRO A 35 LEU A 45 1 11 HELIX 3 A2A ASP A 54 ILE A 58 5 5 HELIX 4 A2 ALA A 64 THR A 81 1KINKED 18 HELIX 5 A3 ARG A 108 MET A 128 1KINKED 21 HELIX 6 A4 LEU A 150 LYS A 171 1 22 HELIX 7 A5 VAL A 195 GLN A 204 1 10 HELIX 8 A6A THR A 217 GLU A 220 1TURN 4 HELIX 9 A6B HIS A 219 GLY A 224 5 6 HELIX 10 A6 PHE A 227 TRP A 236 1 10 HELIX 11 A7 LEU A 264 ASN A 276 1 13 HELIX 12 A8 TYR A 301 ALA A 327 1KINKED 27 HELIX 13 A9 PRO A 329 SER A 338 1 10 HELIX 14 A10 VAL A 340 GLY A 344 5 5 HELIX 15 A11 ALA A 354 ASN A 359 5 6 HELIX 16 A12 ALA A 369 GLU A 374 1TURN 6 HELIX 17 A13 PHE A 379 LEU A 391 1 13 HELIX 18 B0 LEU B 14 VAL B 17 5 4 HELIX 19 B1 PRO B 35 LEU B 45 1 11 HELIX 20 B2A ASP B 54 ILE B 58 5 5 HELIX 21 B2 ALA B 64 THR B 81 1KINKED 18 HELIX 22 B3 ARG B 108 MET B 128 1KINKED 21 HELIX 23 B4 LEU B 150 LYS B 171 1 22 HELIX 24 B5 VAL B 195 GLN B 204 1 10 HELIX 25 B6A THR B 217 GLU B 220 1TURN 4 HELIX 26 B6B HIS B 219 GLY B 224 5 6 HELIX 27 B6 PHE B 227 TRP B 236 1 10 HELIX 28 B7 LEU B 264 ASN B 276 1 13 HELIX 29 B8 TYR B 301 ALA B 327 1KINKED 27 HELIX 30 B9 PRO B 329 SER B 338 1 10 HELIX 31 B10 VAL B 340 GLY B 344 5 5 HELIX 32 B11 ALA B 354 ASN B 359 5 6 HELIX 33 B12 ALA B 369 GLU B 374 1TURN 6 HELIX 34 B13 PHE B 379 LEU B 391 1 13
SHEET 1 BAA 9 HIS A 9 LEU A 14 0 SHEET 2 BAA 9 TYR A 48 THR A 51 1 SHEET 3 BAA 9 LYS A 84 VAL A 88 1 SHEET 4 BAA 9 GLU A 131 MET A 135 1 SHEET 5 BAA 9 ARG A 176 GLU A 180 1 SHEET 6 BAA 9 ILE A 210 THR A 217 1 SHEET 7 BAA 9 PHE A 241 LEU A 245 1 SHEET 8 BAA 9 ARG A 289 ASP A 292 1 SHEET 9 BAA 9 HIS A 9 LEU A 14 1 SHEET 1 BAB 9 HIS B 9 LEU B 14 0 SHEET 2 BAB 9 TYR B 48 THR B 51 1 SHEET 3 BAB 9 LYS B 84 VAL B 88 1 SHEET 4 BAB 9 GLU B 131 MET B 135 1 SHEET 5 BAB 9 ARG B 176 GLU B 180 1 SHEET 6 BAB 9 ILE B 210 THR B 217 1 SHEET 7 BAB 9 PHE B 241 LEU B 245 1 SHEET 8 BAB 9 ARG B 289 ASP B 292 1 SHEET 9 BAB 9 HIS B 9 LEU B 14 1
LINK MG MG A 399 OE2 GLU A 180 1555 1555 2.22 LINK MG MG A 399 OE1 GLU A 216 1555 1555 2.01 LINK MG MG A 399 O2 XYL A 400 1555 1555 2.39 LINK MG MG A 399 OD2 ASP A 244 1555 1555 2.08 LINK MG MG A 399 OD1 ASP A 292 1555 1555 2.17 LINK MG MG A 399 OE1 GLU A 180 1555 1555 3.04 LINK MG MG A 399 O4 XYL A 400 1555 1555 2.11 LINK MG MG B 399 OD2 ASP B 244 1555 1555 1.92 LINK MG MG B 399 OD1 ASP B 292 1555 1555 2.02 LINK MG MG B 399 O2 XYL B 400 1555 1555 2.23 LINK MG MG B 399 O4 XYL B 400 1555 1555 2.17 LINK MG MG B 399 OE1 GLU B 216 1555 1555 2.02 LINK MG MG B 399 OE2 GLU B 180 1555 1555 2.11
CISPEP 1 GLU A 185 PRO A 186 0 10.36 CISPEP 2 GLU B 185 PRO B 186 0 6.77
SITE 1 AC1 15 TRP A 15 HIS A 53 TRP A 136 GLU A 180 SITE 2 AC1 15 LYS A 182 GLU A 216 HIS A 219 ASP A 244 SITE 3 AC1 15 ASP A 292 MG A 399 HOH A 506 HOH A 507 SITE 4 AC1 15 HOH A 508 HOH A 509 PHE B 25 SITE 1 AC2 14 TRP B 15 HIS B 53 TRP B 136 GLU B 180 SITE 2 AC2 14 LYS B 182 GLU B 216 HIS B 219 ASP B 244 SITE 3 AC2 14 ASP B 292 MG B 399 HOH B 424 HOH B 529 SITE 4 AC2 14 HOH B 530 HOH B 531 SITE 1 AC3 5 GLU A 180 GLU A 216 ASP A 244 ASP A 292 SITE 2 AC3 5 XYL A 400 SITE 1 AC4 5 GLU B 180 GLU B 216 ASP B 244 ASP B 292 SITE 2 AC4 5 XYL B 400
CRYST1 105.900 105.900 153.600 90.00 90.00 120.00 P 31 2 1 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009443 0.005452 0.000000 0.00000
SCALE2 0.000000 0.010904 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006510 0.00000
MTRIX1 1 -0.888200 -0.062040 0.454050 66.43000 1
MTRIX2 1 -0.067440 -0.962300 -0.263510 115.38000 1
MTRIX3 1 0.453270 -0.264830 0.851120 0.13000 1