10 20 30 40 50 60 70 80 5TIM - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ISOMERASE(INTRAMOLECULAR OXIDOREDUCTASE)23-APR-91 5TIM
TITLE REFINED 1.83 ANGSTROMS STRUCTURE OF TRYPANOSOMAL TITLE 2 TRIOSEPHOSPHATE ISOMERASE, CRYSTALLIZED IN THE PRESENCE OF TITLE 3 2.4 M-AMMONIUM SULPHATE. A COMPARISON WITH THE STRUCTURE TITLE 4 OF THE TRYPANOSOMAL TRIOSEPHOSPHATE ISOMERASE-GLYCEROL-3- TITLE 5 PHOSPHATE COMPLEX
COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.3.1.1; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI BRUCEI; SOURCE 3 ORGANISM_TAXID: 5702; SOURCE 4 STRAIN: BRUCEI
KEYWDS ISOMERASE(INTRAMOLECULAR OXIDOREDUCTASE)
EXPDTA X-RAY DIFFRACTION
AUTHOR R.K.WIERENGA,W.G.J.HOL
REVDAT 3 24-FEB-09 5TIM 1 VERSN REVDAT 2 01-APR-03 5TIM 1 JRNL REVDAT 1 15-OCT-92 5TIM 0
SPRSDE 15-OCT-92 5TIM 2TIM
JRNL AUTH R.K.WIERENGA,M.E.NOBLE,G.VRIEND,S.NAUCHE,W.G.HOL JRNL TITL REFINED 1.83 A STRUCTURE OF TRYPANOSOMAL JRNL TITL 2 TRIOSEPHOSPHATE ISOMERASE CRYSTALLIZED IN THE JRNL TITL 3 PRESENCE OF 2.4 M-AMMONIUM SULPHATE. A COMPARISON JRNL TITL 4 WITH THE STRUCTURE OF THE TRYPANOSOMAL JRNL TITL 5 TRIOSEPHOSPHATE ISOMERASE-GLYCEROL-3-PHOSPHATE JRNL TITL 6 COMPLEX. JRNL REF J.MOL.BIOL. V. 220 995 1991 JRNL REFN ISSN 0022-2836 JRNL PMID 1880808 JRNL DOI 10.1016/0022-2836(91)90368-G
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.K.WIERENGA,M.E.M.NOBLE,J.P.M.POSTMA,H.GROENDIJK, REMARK 1 AUTH 2 K.H.KALK,W.G.J.HOL,F.R.OPPERDOES REMARK 1 TITL THE CRYSTAL STRUCTURE OF THE "OPEN" AND THE REMARK 1 TITL 2 "CLOSED" CONFORMATION OF THE FLEXIBLE LOOP OF REMARK 1 TITL 3 TRYPANOSOMAL TRIOSEPHOSPHATE ISOMERASE REMARK 1 REF PROTEINS V. 10 33 1991 REMARK 1 REFN ISSN 0887-3585 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.E.M.NOBLE,R.K.WIERENGA,A.-M.LAMBEIR, REMARK 1 AUTH 2 F.R.OPPERDOES,A.-M.W.H.THUNNISSEN,K.H.KALK, REMARK 1 AUTH 3 H.GROENDIJK,W.G.J.HOL REMARK 1 TITL THE ADAPTABILITY OF THE ACTIVE SITE OF REMARK 1 TITL 2 TRYPANOSOMAL TRIOSEPHOSPHATE ISOMERASE AS OBSERVED REMARK 1 TITL 3 IN THE CRYSTAL STRUCTURES OF THREE DIFFERENT REMARK 1 TITL 4 COMPLEXES REMARK 1 REF PROTEINS V. 10 50 1991 REMARK 1 REFN ISSN 0887-3585 REMARK 1 REFERENCE 3 REMARK 1 AUTH M.E.M.NOBLE,C.L.M.J.VERLINDE,H.GROENDIJK,K.H.KALK, REMARK 1 AUTH 2 R.K.WIERENGA,W.G.J.HOL REMARK 1 TITL CRYSTALLOGRAPHIC AND MOLECULAR MODELING STUDIES ON REMARK 1 TITL 2 TRYPANOSOMAL TRIOSEPHOSPHATE ISOMERASE: A CRITICAL REMARK 1 TITL 3 ASSESSMENT OF THE PREDICTED AND OBSERVED REMARK 1 TITL 4 STRUCTURES OF THE COMPLEX WITH 2-PHOSPHOGLYCERATE REMARK 1 REF J.MED.CHEM. V. 34 2709 1991 REMARK 1 REFN ISSN 0022-2623 REMARK 1 REFERENCE 4 REMARK 1 AUTH R.K.WIERENGA,K.H.KALK,W.G.J.HOL REMARK 1 TITL STRUCTURE DETERMINATION OF THE GLYCOSOMAL REMARK 1 TITL 2 TRIOSEPHOSPHATE ISOMERASE FROM TRYPANOSOMA BRUCEI REMARK 1 TITL 3 BRUCEI AT 2.4 ANGSTROMS RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 198 109 1987 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 5 REMARK 1 AUTH R.K.WIERENGA,W.G.J.HOL,O.MISSET,F.R.OPPERDOES REMARK 1 TITL PRELIMINARY CRYSTALLOGRAPHIC STUDIES OF REMARK 1 TITL 2 TRIOSEPHOSPHATE ISOMERASE FROM THE BLOOD PARASITE REMARK 1 TITL 3 TRYPANOSOMA BRUCEI BRUCEI REMARK 1 REF J.MOL.BIOL. V. 178 487 1984 REMARK 1 REFN ISSN 0022-2836
REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3766 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 279 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.020 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.900 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.023 ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : 0.024 ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : NULL REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 5TIM COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 56.57000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 23.28000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.84500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 23.28000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 56.57000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.84500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: REMARK 300 THE ASYMMETRIC UNIT CONSISTS OF A DIMER. THE TWO REMARK 300 MOLECULES HAVE BEEN ASSIGNED CHAIN INDICATORS *A* AND *B*. REMARK 300 SUBUNITS *A* AND *B* DO NOT HAVE IDENTICAL CONFORMATIONS. REMARK 300 THE FLEXIBLE LOOP OF SUBUNIT *A* IS OPEN AND THE FLEXIBLE REMARK 300 LOOP OF SUBUNIT *B* IS ALMOST CLOSED. THERE IS A SULFATE REMARK 300 ION BOUND IN THE ACTIVE SITE OF SUBUNIT *B*.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 SECONDARY STRUCTURE SPECIFICATIONS WERE MADE BY USE OF REMARK 400 PROGRAM *DSSP* OF W. KABSCH AND C. SANDER.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 77 CD GLU A 77 OE2 0.068 REMARK 500 GLU A 107 CD GLU A 107 OE2 0.117 REMARK 500 GLU A 129 CD GLU A 129 OE2 0.078 REMARK 500 GLU A 133 CD GLU A 133 OE1 0.086 REMARK 500 GLU A 135 CD GLU A 135 OE2 0.093 REMARK 500 GLU A 185 CD GLU A 185 OE1 0.073 REMARK 500 GLU A 205 CD GLU A 205 OE1 0.076 REMARK 500 GLU B 23 CD GLU B 23 OE2 0.072 REMARK 500 GLU B 53 CD GLU B 53 OE1 0.073 REMARK 500 GLU B 97 CD GLU B 97 OE2 0.077 REMARK 500 GLU B 107 CD GLU B 107 OE2 0.084 REMARK 500 GLU B 133 CD GLU B 133 OE2 0.073 REMARK 500 GLU B 167 CD GLU B 167 OE2 -0.068 REMARK 500 GLU B 185 CD GLU B 185 OE1 0.079 REMARK 500 GLU B 205 CD GLU B 205 OE1 0.082 REMARK 500 GLU B 241 CD GLU B 241 OE1 0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 61 CG1 - CB - CG2 ANGL. DEV. = -14.1 DEGREES REMARK 500 ARG A 98 NE - CZ - NH1 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG A 98 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP A 111 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 134 CG - CD - NE ANGL. DEV. = -13.1 DEGREES REMARK 500 ARG A 134 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ASP A 158 CB - CG - OD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ARG A 191 CD - NE - CZ ANGL. DEV. = 11.5 DEGREES REMARK 500 ARG A 191 NE - CZ - NH1 ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG A 191 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ASP A 201 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 TYR A 223 CB - CG - CD1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 226 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ASP A 227 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ASP A 244 CB - CG - OD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP B 26 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP B 85 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG B 98 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 TYR B 102 CB - CG - CD1 ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG B 134 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 134 NE - CZ - NH2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ARG B 138 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 VAL B 141 CA - CB - CG2 ANGL. DEV. = -9.2 DEGREES REMARK 500 ASP B 158 CB - CG - OD1 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP B 158 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG B 191 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 SER B 195 N - CA - CB ANGL. DEV. = 9.4 DEGREES REMARK 500 ASP B 201 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 201 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP B 227 CB - CG - OD1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ASP B 227 CB - CG - OD2 ANGL. DEV. = -8.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 13 -143.05 51.32 REMARK 500 LYS B 13 -144.30 55.41 REMARK 500 ASN B 34 43.60 -96.45 REMARK 500 ASN B 66 167.49 179.45 REMARK 500 PRO B 168 106.54 -56.71 REMARK 500 ALA B 248 -2.30 -58.18 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 651 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A 652 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A 686 DISTANCE = 7.23 ANGSTROMS REMARK 525 HOH B 802 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A 719 DISTANCE = 9.03 ANGSTROMS REMARK 525 HOH A 741 DISTANCE = 5.08 ANGSTROMS REMARK 525 HOH A 744 DISTANCE = 5.18 ANGSTROMS REMARK 525 HOH A 750 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH B 973 DISTANCE = 8.56 ANGSTROMS REMARK 525 HOH A 864 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH A 867 DISTANCE = 5.59 ANGSTROMS REMARK 525 HOH A 871 DISTANCE = 5.69 ANGSTROMS REMARK 525 HOH B 990 DISTANCE = 7.72 ANGSTROMS REMARK 525 HOH A 880 DISTANCE = 5.11 ANGSTROMS REMARK 525 HOH A 953 DISTANCE = 7.56 ANGSTROMS
REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEETS PRESENTED AS *A* AND *B* ON SHEET RECORDS BELOW REMARK 700 ARE ACTUALLY EIGHT-STRANDED BETA-BARRELS. THESE ARE REMARK 700 REPRESENTED BY NINE-STRANDED SHEETS IN WHICH THE FIRST AND REMARK 700 LAST STRANDS ARE IDENTICAL.
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 255 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 256 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTT A 257
DBREF 5TIM A 1 250 UNP P04789 TPIS_TRYBB 1 250 DBREF 5TIM B 1 250 UNP P04789 TPIS_TRYBB 1 250
SEQRES 1 A 250 MET SER LYS PRO GLN PRO ILE ALA ALA ALA ASN TRP LYS SEQRES 2 A 250 CYS ASN GLY SER GLN GLN SER LEU SER GLU LEU ILE ASP SEQRES 3 A 250 LEU PHE ASN SER THR SER ILE ASN HIS ASP VAL GLN CYS SEQRES 4 A 250 VAL VAL ALA SER THR PHE VAL HIS LEU ALA MET THR LYS SEQRES 5 A 250 GLU ARG LEU SER HIS PRO LYS PHE VAL ILE ALA ALA GLN SEQRES 6 A 250 ASN ALA ILE ALA LYS SER GLY ALA PHE THR GLY GLU VAL SEQRES 7 A 250 SER LEU PRO ILE LEU LYS ASP PHE GLY VAL ASN TRP ILE SEQRES 8 A 250 VAL LEU GLY HIS SER GLU ARG ARG ALA TYR TYR GLY GLU SEQRES 9 A 250 THR ASN GLU ILE VAL ALA ASP LYS VAL ALA ALA ALA VAL SEQRES 10 A 250 ALA SER GLY PHE MET VAL ILE ALA CYS ILE GLY GLU THR SEQRES 11 A 250 LEU GLN GLU ARG GLU SER GLY ARG THR ALA VAL VAL VAL SEQRES 12 A 250 LEU THR GLN ILE ALA ALA ILE ALA LYS LYS LEU LYS LYS SEQRES 13 A 250 ALA ASP TRP ALA LYS VAL VAL ILE ALA TYR GLU PRO VAL SEQRES 14 A 250 TRP ALA ILE GLY THR GLY LYS VAL ALA THR PRO GLN GLN SEQRES 15 A 250 ALA GLN GLU ALA HIS ALA LEU ILE ARG SER TRP VAL SER SEQRES 16 A 250 SER LYS ILE GLY ALA ASP VAL ALA GLY GLU LEU ARG ILE SEQRES 17 A 250 LEU TYR GLY GLY SER VAL ASN GLY LYS ASN ALA ARG THR SEQRES 18 A 250 LEU TYR GLN GLN ARG ASP VAL ASN GLY PHE LEU VAL GLY SEQRES 19 A 250 GLY ALA SER LEU LYS PRO GLU PHE VAL ASP ILE ILE LYS SEQRES 20 A 250 ALA THR GLN SEQRES 1 B 250 MET SER LYS PRO GLN PRO ILE ALA ALA ALA ASN TRP LYS SEQRES 2 B 250 CYS ASN GLY SER GLN GLN SER LEU SER GLU LEU ILE ASP SEQRES 3 B 250 LEU PHE ASN SER THR SER ILE ASN HIS ASP VAL GLN CYS SEQRES 4 B 250 VAL VAL ALA SER THR PHE VAL HIS LEU ALA MET THR LYS SEQRES 5 B 250 GLU ARG LEU SER HIS PRO LYS PHE VAL ILE ALA ALA GLN SEQRES 6 B 250 ASN ALA ILE ALA LYS SER GLY ALA PHE THR GLY GLU VAL SEQRES 7 B 250 SER LEU PRO ILE LEU LYS ASP PHE GLY VAL ASN TRP ILE SEQRES 8 B 250 VAL LEU GLY HIS SER GLU ARG ARG ALA TYR TYR GLY GLU SEQRES 9 B 250 THR ASN GLU ILE VAL ALA ASP LYS VAL ALA ALA ALA VAL SEQRES 10 B 250 ALA SER GLY PHE MET VAL ILE ALA CYS ILE GLY GLU THR SEQRES 11 B 250 LEU GLN GLU ARG GLU SER GLY ARG THR ALA VAL VAL VAL SEQRES 12 B 250 LEU THR GLN ILE ALA ALA ILE ALA LYS LYS LEU LYS LYS SEQRES 13 B 250 ALA ASP TRP ALA LYS VAL VAL ILE ALA TYR GLU PRO VAL SEQRES 14 B 250 TRP ALA ILE GLY THR GLY LYS VAL ALA THR PRO GLN GLN SEQRES 15 B 250 ALA GLN GLU ALA HIS ALA LEU ILE ARG SER TRP VAL SER SEQRES 16 B 250 SER LYS ILE GLY ALA ASP VAL ALA GLY GLU LEU ARG ILE SEQRES 17 B 250 LEU TYR GLY GLY SER VAL ASN GLY LYS ASN ALA ARG THR SEQRES 18 B 250 LEU TYR GLN GLN ARG ASP VAL ASN GLY PHE LEU VAL GLY SEQRES 19 B 250 GLY ALA SER LEU LYS PRO GLU PHE VAL ASP ILE ILE LYS SEQRES 20 B 250 ALA THR GLN
HET SO4 B 255 5 HET SO4 A 256 5 HET DTT A 257 8
HETNAM SO4 SULFATE ION HETNAM DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE
HETSYN DTT 1,4-DITHIOTHREITOL
FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 DTT C4 H10 O2 S2 FORMUL 6 HOH *279(H2 O)
HELIX 1 1A GLN A 18 SER A 30 1 13 HELIX 2 2A LEU A 48 ARG A 54 1 7 HELIX 3 3A LEU A 80 ASP A 85 1 6 HELIX 4 4FA SER A 96 TYR A 101 1 6 HELIX 5 4A ASN A 106 ALA A 118 1 13 HELIX 6 5FA LEU A 131 GLU A 135 1 5 HELIX 7 5A THR A 139 LYS A 152 1 14 HELIX 8 6BA LYS A 156 LYS A 161 5 6 HELIX 9 6A PRO A 180 LYS A 197 1 18 HELIX 10 7BA ALA A 200 GLU A 205 1 6 HELIX 11 7A GLY A 216 TYR A 223 1 8 HELIX 12 8FA GLY A 235 LEU A 238 5 4 HELIX 13 8A PHE A 242 LYS A 247 1 6 HELIX 14 1B GLN B 18 ASN B 29 1 12 HELIX 15 2B LEU B 48 ARG B 54 1 7 HELIX 16 3B LEU B 80 ASP B 85 1 6 HELIX 17 4FB SER B 96 TYR B 101 1 6 HELIX 18 4B ASN B 106 ALA B 118 1 13 HELIX 19 5FB LEU B 131 GLU B 135 1 5 HELIX 20 5B THR B 139 ALA B 151 1 13 HELIX 21 6BB LYS B 156 LYS B 161 5 6 HELIX 22 6B PRO B 180 LYS B 197 1 18 HELIX 23 7BB ALA B 200 GLU B 205 1 6 HELIX 24 7B ALA B 219 GLN B 224 1 6 HELIX 25 8FB GLY B 235 LEU B 238 5 4 HELIX 26 8B PHE B 242 LYS B 247 1 6
SHEET 1 A 9 ILE A 7 ASN A 11 0 SHEET 2 A 9 GLN A 38 SER A 43 1 SHEET 3 A 9 PHE A 60 ALA A 64 1 SHEET 4 A 9 TRP A 90 LEU A 93 1 SHEET 5 A 9 MET A 122 ILE A 127 1 SHEET 6 A 9 VAL A 162 TYR A 166 1 SHEET 7 A 9 ARG A 207 TYR A 210 1 SHEET 8 A 9 GLY A 230 VAL A 233 1 SHEET 9 A 9 ILE A 7 ASN A 11 1 SHEET 1 B 9 ILE B 7 ASN B 11 0 SHEET 2 B 9 GLN B 38 ALA B 42 1 SHEET 3 B 9 PHE B 60 ALA B 64 1 SHEET 4 B 9 TRP B 90 LEU B 93 1 SHEET 5 B 9 MET B 122 ILE B 127 1 SHEET 6 B 9 VAL B 162 TYR B 166 1 SHEET 7 B 9 ILE B 208 TYR B 210 1 SHEET 8 B 9 GLY B 230 VAL B 233 1 SHEET 9 B 9 ILE A 7 ASN A 11 1
SITE 1 AC1 10 ALA B 171 ILE B 172 GLY B 173 SER B 213 SITE 2 AC1 10 GLY B 234 GLY B 235 HOH B 626 HOH B 688 SITE 3 AC1 10 HOH B 848 HOH B 968 SITE 1 AC2 5 LYS A 70 SER A 71 PRO A 81 HOH A 724 SITE 2 AC2 5 HOH A 965 SITE 1 AC3 7 LEU A 144 THR A 145 TRP A 193 HOH A 675 SITE 2 AC3 7 LEU B 144 TRP B 193 LYS B 197
CRYST1 113.140 97.690 46.560 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008839 0.000000 0.000000 0.00000
SCALE2 0.000000 0.010236 0.000000 0.00000
SCALE3 0.000000 0.000000 0.021478 0.00000