10 20 30 40 50 60 70 80 5RLA - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 07-MAY-97 5RLA
TITLE ALTERING THE BINUCLEAR MANGANESE CLUSTER OF ARGINASE TITLE 2 DIMINISHES THERMOSTABILITY AND CATALYTIC FUNCTION
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGINASE; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 3.5.3.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 CELL_LINE: BL21; SOURCE 6 ORGAN: LIVER; SOURCE 7 CELLULAR_LOCATION: CYTOPLASM; SOURCE 8 GENE: PARGR-2; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PRSET C; SOURCE 14 EXPRESSION_SYSTEM_GENE: PARG-X
KEYWDS HYDROLASE, UREA CYCLE, ARGININE METABOLISM
EXPDTA X-RAY DIFFRACTION
AUTHOR L.R.SCOLNICK,Z.F.KANYO,D.W.CHRISTIANSON
REVDAT 2 24-FEB-09 5RLA 1 VERSN REVDAT 1 13-MAY-98 5RLA 0
JRNL AUTH L.R.SCOLNICK,Z.F.KANYO,R.C.CAVALLI,D.E.ASH, JRNL AUTH 2 D.W.CHRISTIANSON JRNL TITL ALTERING THE BINUCLEAR MANGANESE CLUSTER OF JRNL TITL 2 ARGINASE DIMINISHES THERMOSTABILITY AND CATALYTIC JRNL TITL 3 FUNCTION. JRNL REF BIOCHEMISTRY V. 36 10558 1997 JRNL REFN ISSN 0006-2960 JRNL PMID 9265637 JRNL DOI 10.1021/BI970800V
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.74 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.1000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.8 REMARK 3 NUMBER OF REFLECTIONS : 23414 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 637 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.74 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.86 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2640 REMARK 3 BIN R VALUE (WORKING SET) : 0.4000 REMARK 3 BIN FREE R VALUE : 0.4600 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 2.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 83 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.006 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3230 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 27 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : 0.25 REMARK 3 LOW RESOLUTION CUTOFF (A) : 12.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.70 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.60 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : RESTRAINTS REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : PARAM-LRS.MAY96 REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH-LRS.MAY96 REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT CORRECTION USED
REMARK 4 REMARK 4 5RLA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : JAN-95 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : YALE MIRRORS REMARK 200 OPTICS : YALE REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37872 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 200 DATA REDUNDANCY : 1.600 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : 0.09100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : 0.45000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: RAT LIVER ARGINASE REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12 - 18% PEG 8000, 50 MM BICINE PH REMARK 280 = 8.5, 0.05% AZIDE, 1 MM MNCL2 SOAKED FOR 1 WEEK IN 15MM EDTA REMARK 280 + DPA
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.06667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.03333 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 LYS A 4 REMARK 465 PRO A 5 REMARK 465 LYS A 320 REMARK 465 PRO A 321 REMARK 465 PRO A 322 REMARK 465 LYS A 323 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 SER B 3 REMARK 465 LYS B 4 REMARK 465 PRO B 5 REMARK 465 LYS B 320 REMARK 465 PRO B 321 REMARK 465 PRO B 322 REMARK 465 LYS B 323 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 SER C 3 REMARK 465 LYS C 4 REMARK 465 PRO C 5 REMARK 465 LYS C 320 REMARK 465 PRO C 321 REMARK 465 PRO C 322 REMARK 465 LYS C 323
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 48 CB CG CD NE CZ NH1 NH2 REMARK 470 VAL A 56 CB CG1 CG2 REMARK 470 ASN A 101 CB CG OD1 ND2 REMARK 470 LEU A 319 O REMARK 470 ARG B 48 CB CG CD NE CZ NH1 NH2 REMARK 470 VAL B 56 CB CG1 CG2 REMARK 470 ASN B 101 CB CG OD1 ND2 REMARK 470 LEU B 319 O REMARK 470 ARG C 48 CB CG CD NE CZ NH1 NH2 REMARK 470 VAL C 56 CB CG1 CG2 REMARK 470 ASN C 101 CB CG OD1 ND2 REMARK 470 LEU C 319 O
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 236 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 LEU A 273 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 LEU B 273 CA - CB - CG ANGL. DEV. = 17.2 DEGREES REMARK 500 LEU C 273 CA - CB - CG ANGL. DEV. = 16.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 13 76.94 -119.52 REMARK 500 GLU A 44 49.51 -79.81 REMARK 500 PHE A 64 -71.50 -63.88 REMARK 500 GLN A 65 -98.53 -128.77 REMARK 500 ASN A 139 114.63 -28.86 REMARK 500 GLU A 151 -9.56 -54.40 REMARK 500 ARG A 180 16.25 -167.00 REMARK 500 ASP A 181 64.44 -161.31 REMARK 500 GLU A 315 -11.96 73.17 REMARK 500 ALA B 13 74.11 -119.68 REMARK 500 GLU B 44 43.55 -80.47 REMARK 500 PHE B 64 -73.73 -64.69 REMARK 500 GLN B 65 -103.38 -126.46 REMARK 500 ASN B 139 116.54 -32.25 REMARK 500 GLU B 151 -7.69 -55.49 REMARK 500 ARG B 180 9.22 -161.94 REMARK 500 ASP B 181 66.34 -153.97 REMARK 500 GLU B 315 -12.29 73.24 REMARK 500 ALA C 13 75.43 -118.31 REMARK 500 GLU C 44 45.17 -79.37 REMARK 500 GLN C 65 -101.45 -132.73 REMARK 500 MET C 103 1.74 -69.05 REMARK 500 ASN C 139 114.50 -22.88 REMARK 500 GLU C 151 -2.26 -56.82 REMARK 500 ARG C 180 8.37 -163.28 REMARK 500 ASP C 181 68.43 -152.09 REMARK 500 GLU C 315 -10.80 72.24 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 501 DISTANCE = 16.68 ANGSTROMS REMARK 525 HOH B 502 DISTANCE = 23.13 ANGSTROMS REMARK 525 HOH A 502 DISTANCE = 43.59 ANGSTROMS REMARK 525 HOH A 503 DISTANCE = 45.42 ANGSTROMS REMARK 525 HOH A 504 DISTANCE = 35.05 ANGSTROMS REMARK 525 HOH A 505 DISTANCE = 46.43 ANGSTROMS REMARK 525 HOH A 506 DISTANCE = 29.87 ANGSTROMS REMARK 525 HOH A 507 DISTANCE = 23.80 ANGSTROMS REMARK 525 HOH A 508 DISTANCE = 41.45 ANGSTROMS REMARK 525 HOH A 509 DISTANCE = 35.42 ANGSTROMS REMARK 525 HOH A 510 DISTANCE = 41.14 ANGSTROMS REMARK 525 HOH A 511 DISTANCE = 42.12 ANGSTROMS REMARK 525 HOH A 512 DISTANCE = 34.99 ANGSTROMS REMARK 525 HOH A 513 DISTANCE = 42.17 ANGSTROMS REMARK 525 HOH A 514 DISTANCE = 38.69 ANGSTROMS REMARK 525 HOH A 515 DISTANCE = 35.00 ANGSTROMS REMARK 525 HOH A 516 DISTANCE = 66.64 ANGSTROMS REMARK 525 HOH A 517 DISTANCE = 76.38 ANGSTROMS REMARK 525 HOH A 518 DISTANCE = 61.78 ANGSTROMS REMARK 525 HOH A 519 DISTANCE = 65.96 ANGSTROMS REMARK 525 HOH A 520 DISTANCE = 69.59 ANGSTROMS REMARK 525 HOH A 521 DISTANCE = 60.04 ANGSTROMS REMARK 525 HOH A 522 DISTANCE = 50.75 ANGSTROMS REMARK 525 HOH A 523 DISTANCE = 74.71 ANGSTROMS REMARK 525 HOH A 524 DISTANCE = 67.41 ANGSTROMS REMARK 525 HOH A 525 DISTANCE = 59.89 ANGSTROMS REMARK 525 HOH A 526 DISTANCE = 45.71 ANGSTROMS REMARK 525 HOH A 527 DISTANCE = 69.30 ANGSTROMS REMARK 525 HOH A 528 DISTANCE = 65.01 ANGSTROMS REMARK 525 HOH A 529 DISTANCE = 70.05 ANGSTROMS REMARK 525 HOH A 530 DISTANCE = 76.67 ANGSTROMS REMARK 525 HOH A 531 DISTANCE = 92.56 ANGSTROMS REMARK 525 HOH A 532 DISTANCE = 90.14 ANGSTROMS REMARK 525 HOH A 533 DISTANCE = 46.03 ANGSTROMS REMARK 525 HOH A 534 DISTANCE = 56.04 ANGSTROMS REMARK 525 HOH A 535 DISTANCE = 93.08 ANGSTROMS REMARK 525 HOH A 536 DISTANCE = 95.12 ANGSTROMS REMARK 525 HOH A 537 DISTANCE = 46.33 ANGSTROMS REMARK 525 HOH A 538 DISTANCE = 56.23 ANGSTROMS REMARK 525 HOH A 539 DISTANCE = 51.34 ANGSTROMS REMARK 525 HOH A 540 DISTANCE = 48.67 ANGSTROMS REMARK 525 HOH A 541 DISTANCE = 39.43 ANGSTROMS REMARK 525 HOH A 542 DISTANCE = 30.58 ANGSTROMS REMARK 525 HOH A 543 DISTANCE = 61.92 ANGSTROMS REMARK 525 HOH A 544 DISTANCE = 27.57 ANGSTROMS REMARK 525 HOH A 545 DISTANCE = 39.89 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 500 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 124 OD1 REMARK 620 2 ASP A 234 OD2 138.3 REMARK 620 3 ASP A 234 OD1 82.9 55.6 REMARK 620 4 HIS A 126 ND1 83.3 92.4 90.1 REMARK 620 5 ASP A 232 OD2 99.4 88.6 94.8 174.6 REMARK 620 6 HOH A 543 O 107.3 114.3 169.6 92.6 82.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 124 OD1 REMARK 620 2 ASP B 232 OD2 87.0 REMARK 620 3 ASP B 234 OD2 124.3 84.1 REMARK 620 4 HIS B 126 ND1 85.4 171.6 97.1 REMARK 620 5 ASP B 234 OD1 72.3 82.8 52.1 91.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 124 OD1 REMARK 620 2 ASP C 232 OD2 102.5 REMARK 620 3 ASP C 234 OD2 127.9 90.3 REMARK 620 4 HIS C 126 ND1 79.1 177.6 90.1 REMARK 620 5 ASP C 234 OD1 74.2 99.9 53.8 82.2 REMARK 620 N 1 2 3 4
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: MNA REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: BI-MANGANESE NUCLEAR BINDING SITE. REMARK 800 SITE_IDENTIFIER: MNB REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: BI-MANGANESE NUCLEAR BINDING SITE. REMARK 800 SITE_IDENTIFIER: MNC REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: BI-MANGANESE NUCLEAR BINDING SITE. REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 500 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 501 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 502
DBREF 5RLA A 1 323 UNP P07824 ARGI1_RAT 1 323 DBREF 5RLA B 1 323 UNP P07824 ARGI1_RAT 1 323 DBREF 5RLA C 1 323 UNP P07824 ARGI1_RAT 1 323
SEQADV 5RLA ASN A 101 UNP P07824 HIS 101 ENGINEERED SEQADV 5RLA ASN B 101 UNP P07824 HIS 101 ENGINEERED SEQADV 5RLA ASN C 101 UNP P07824 HIS 101 ENGINEERED
SEQRES 1 A 323 MET SER SER LYS PRO LYS PRO ILE GLU ILE ILE GLY ALA SEQRES 2 A 323 PRO PHE SER LYS GLY GLN PRO ARG GLY GLY VAL GLU LYS SEQRES 3 A 323 GLY PRO ALA ALA LEU ARG LYS ALA GLY LEU VAL GLU LYS SEQRES 4 A 323 LEU LYS GLU THR GLU TYR ASN VAL ARG ASP HIS GLY ASP SEQRES 5 A 323 LEU ALA PHE VAL ASP VAL PRO ASN ASP SER PRO PHE GLN SEQRES 6 A 323 ILE VAL LYS ASN PRO ARG SER VAL GLY LYS ALA ASN GLU SEQRES 7 A 323 GLN LEU ALA ALA VAL VAL ALA GLU THR GLN LYS ASN GLY SEQRES 8 A 323 THR ILE SER VAL VAL LEU GLY GLY ASP ASN SER MET ALA SEQRES 9 A 323 ILE GLY SER ILE SER GLY HIS ALA ARG VAL HIS PRO ASP SEQRES 10 A 323 LEU CYS VAL ILE TRP VAL ASP ALA HIS THR ASP ILE ASN SEQRES 11 A 323 THR PRO LEU THR THR SER SER GLY ASN LEU HIS GLY GLN SEQRES 12 A 323 PRO VAL ALA PHE LEU LEU LYS GLU LEU LYS GLY LYS PHE SEQRES 13 A 323 PRO ASP VAL PRO GLY PHE SER TRP VAL THR PRO CYS ILE SEQRES 14 A 323 SER ALA LYS ASP ILE VAL TYR ILE GLY LEU ARG ASP VAL SEQRES 15 A 323 ASP PRO GLY GLU HIS TYR ILE ILE LYS THR LEU GLY ILE SEQRES 16 A 323 LYS TYR PHE SER MET THR GLU VAL ASP LYS LEU GLY ILE SEQRES 17 A 323 GLY LYS VAL MET GLU GLU THR PHE SER TYR LEU LEU GLY SEQRES 18 A 323 ARG LYS LYS ARG PRO ILE HIS LEU SER PHE ASP VAL ASP SEQRES 19 A 323 GLY LEU ASP PRO VAL PHE THR PRO ALA THR GLY THR PRO SEQRES 20 A 323 VAL VAL GLY GLY LEU SER TYR ARG GLU GLY LEU TYR ILE SEQRES 21 A 323 THR GLU GLU ILE TYR LYS THR GLY LEU LEU SER GLY LEU SEQRES 22 A 323 ASP ILE MET GLU VAL ASN PRO THR LEU GLY LYS THR PRO SEQRES 23 A 323 GLU GLU VAL THR ARG THR VAL ASN THR ALA VAL ALA LEU SEQRES 24 A 323 THR LEU SER CYS PHE GLY THR LYS ARG GLU GLY ASN HIS SEQRES 25 A 323 LYS PRO GLU THR ASP TYR LEU LYS PRO PRO LYS SEQRES 1 B 323 MET SER SER LYS PRO LYS PRO ILE GLU ILE ILE GLY ALA SEQRES 2 B 323 PRO PHE SER LYS GLY GLN PRO ARG GLY GLY VAL GLU LYS SEQRES 3 B 323 GLY PRO ALA ALA LEU ARG LYS ALA GLY LEU VAL GLU LYS SEQRES 4 B 323 LEU LYS GLU THR GLU TYR ASN VAL ARG ASP HIS GLY ASP SEQRES 5 B 323 LEU ALA PHE VAL ASP VAL PRO ASN ASP SER PRO PHE GLN SEQRES 6 B 323 ILE VAL LYS ASN PRO ARG SER VAL GLY LYS ALA ASN GLU SEQRES 7 B 323 GLN LEU ALA ALA VAL VAL ALA GLU THR GLN LYS ASN GLY SEQRES 8 B 323 THR ILE SER VAL VAL LEU GLY GLY ASP ASN SER MET ALA SEQRES 9 B 323 ILE GLY SER ILE SER GLY HIS ALA ARG VAL HIS PRO ASP SEQRES 10 B 323 LEU CYS VAL ILE TRP VAL ASP ALA HIS THR ASP ILE ASN SEQRES 11 B 323 THR PRO LEU THR THR SER SER GLY ASN LEU HIS GLY GLN SEQRES 12 B 323 PRO VAL ALA PHE LEU LEU LYS GLU LEU LYS GLY LYS PHE SEQRES 13 B 323 PRO ASP VAL PRO GLY PHE SER TRP VAL THR PRO CYS ILE SEQRES 14 B 323 SER ALA LYS ASP ILE VAL TYR ILE GLY LEU ARG ASP VAL SEQRES 15 B 323 ASP PRO GLY GLU HIS TYR ILE ILE LYS THR LEU GLY ILE SEQRES 16 B 323 LYS TYR PHE SER MET THR GLU VAL ASP LYS LEU GLY ILE SEQRES 17 B 323 GLY LYS VAL MET GLU GLU THR PHE SER TYR LEU LEU GLY SEQRES 18 B 323 ARG LYS LYS ARG PRO ILE HIS LEU SER PHE ASP VAL ASP SEQRES 19 B 323 GLY LEU ASP PRO VAL PHE THR PRO ALA THR GLY THR PRO SEQRES 20 B 323 VAL VAL GLY GLY LEU SER TYR ARG GLU GLY LEU TYR ILE SEQRES 21 B 323 THR GLU GLU ILE TYR LYS THR GLY LEU LEU SER GLY LEU SEQRES 22 B 323 ASP ILE MET GLU VAL ASN PRO THR LEU GLY LYS THR PRO SEQRES 23 B 323 GLU GLU VAL THR ARG THR VAL ASN THR ALA VAL ALA LEU SEQRES 24 B 323 THR LEU SER CYS PHE GLY THR LYS ARG GLU GLY ASN HIS SEQRES 25 B 323 LYS PRO GLU THR ASP TYR LEU LYS PRO PRO LYS SEQRES 1 C 323 MET SER SER LYS PRO LYS PRO ILE GLU ILE ILE GLY ALA SEQRES 2 C 323 PRO PHE SER LYS GLY GLN PRO ARG GLY GLY VAL GLU LYS SEQRES 3 C 323 GLY PRO ALA ALA LEU ARG LYS ALA GLY LEU VAL GLU LYS SEQRES 4 C 323 LEU LYS GLU THR GLU TYR ASN VAL ARG ASP HIS GLY ASP SEQRES 5 C 323 LEU ALA PHE VAL ASP VAL PRO ASN ASP SER PRO PHE GLN SEQRES 6 C 323 ILE VAL LYS ASN PRO ARG SER VAL GLY LYS ALA ASN GLU SEQRES 7 C 323 GLN LEU ALA ALA VAL VAL ALA GLU THR GLN LYS ASN GLY SEQRES 8 C 323 THR ILE SER VAL VAL LEU GLY GLY ASP ASN SER MET ALA SEQRES 9 C 323 ILE GLY SER ILE SER GLY HIS ALA ARG VAL HIS PRO ASP SEQRES 10 C 323 LEU CYS VAL ILE TRP VAL ASP ALA HIS THR ASP ILE ASN SEQRES 11 C 323 THR PRO LEU THR THR SER SER GLY ASN LEU HIS GLY GLN SEQRES 12 C 323 PRO VAL ALA PHE LEU LEU LYS GLU LEU LYS GLY LYS PHE SEQRES 13 C 323 PRO ASP VAL PRO GLY PHE SER TRP VAL THR PRO CYS ILE SEQRES 14 C 323 SER ALA LYS ASP ILE VAL TYR ILE GLY LEU ARG ASP VAL SEQRES 15 C 323 ASP PRO GLY GLU HIS TYR ILE ILE LYS THR LEU GLY ILE SEQRES 16 C 323 LYS TYR PHE SER MET THR GLU VAL ASP LYS LEU GLY ILE SEQRES 17 C 323 GLY LYS VAL MET GLU GLU THR PHE SER TYR LEU LEU GLY SEQRES 18 C 323 ARG LYS LYS ARG PRO ILE HIS LEU SER PHE ASP VAL ASP SEQRES 19 C 323 GLY LEU ASP PRO VAL PHE THR PRO ALA THR GLY THR PRO SEQRES 20 C 323 VAL VAL GLY GLY LEU SER TYR ARG GLU GLY LEU TYR ILE SEQRES 21 C 323 THR GLU GLU ILE TYR LYS THR GLY LEU LEU SER GLY LEU SEQRES 22 C 323 ASP ILE MET GLU VAL ASN PRO THR LEU GLY LYS THR PRO SEQRES 23 C 323 GLU GLU VAL THR ARG THR VAL ASN THR ALA VAL ALA LEU SEQRES 24 C 323 THR LEU SER CYS PHE GLY THR LYS ARG GLU GLY ASN HIS SEQRES 25 C 323 LYS PRO GLU THR ASP TYR LEU LYS PRO PRO LYS
HET MN A 500 1 HET MN B 501 1 HET MN C 502 1
HETNAM MN MANGANESE (II) ION
FORMUL 4 MN 3(MN 2+) FORMUL 7 HOH *46(H2 O)
HELIX 1 1 VAL A 24 LYS A 33 5 10 HELIX 2 2 LEU A 36 GLU A 42 1 7 HELIX 3 3 PRO A 70 LYS A 89 1 20 HELIX 4 4 ASN A 101 VAL A 114 5 14 HELIX 5 5 LEU A 140 GLY A 142 5 3 HELIX 6 6 PRO A 144 LEU A 148 1 5 HELIX 7 7 LYS A 150 LEU A 152 5 3 HELIX 8 8 PRO A 184 THR A 192 1 9 HELIX 9 9 MET A 200 LEU A 206 1 7 HELIX 10 10 ILE A 208 LEU A 220 1 13 HELIX 11 11 VAL A 233 GLY A 235 5 3 HELIX 12 12 TYR A 254 THR A 267 1 14 HELIX 13 13 PRO A 280 LEU A 282 5 3 HELIX 14 14 PRO A 286 CYS A 303 1 18 HELIX 15 15 VAL B 24 LYS B 33 5 10 HELIX 16 16 LEU B 36 GLU B 42 1 7 HELIX 17 17 PRO B 70 LYS B 89 1 20 HELIX 18 18 ASN B 101 VAL B 114 5 14 HELIX 19 19 LEU B 140 GLY B 142 5 3 HELIX 20 20 PRO B 144 LEU B 148 1 5 HELIX 21 21 LYS B 150 LEU B 152 5 3 HELIX 22 22 PRO B 184 THR B 192 1 9 HELIX 23 23 MET B 200 LEU B 206 1 7 HELIX 24 24 ILE B 208 LEU B 220 1 13 HELIX 25 25 VAL B 233 GLY B 235 5 3 HELIX 26 26 TYR B 254 THR B 267 1 14 HELIX 27 27 PRO B 280 LEU B 282 5 3 HELIX 28 28 PRO B 286 CYS B 303 1 18 HELIX 29 29 VAL C 24 LYS C 33 5 10 HELIX 30 30 LEU C 36 GLU C 42 1 7 HELIX 31 31 PRO C 70 LYS C 89 1 20 HELIX 32 32 ASN C 101 VAL C 114 5 14 HELIX 33 33 LEU C 140 GLY C 142 5 3 HELIX 34 34 ALA C 146 LEU C 148 5 3 HELIX 35 35 LYS C 150 LEU C 152 5 3 HELIX 36 36 ALA C 171 ASP C 173 5 3 HELIX 37 37 PRO C 184 THR C 192 1 9 HELIX 38 38 MET C 200 LEU C 220 1 21 HELIX 39 39 VAL C 233 GLY C 235 5 3 HELIX 40 40 TYR C 254 THR C 267 1 14 HELIX 41 41 PRO C 280 LEU C 282 5 3 HELIX 42 42 PRO C 286 CYS C 303 1 18
SHEET 1 A 8 LYS A 196 SER A 199 0 SHEET 2 A 8 ILE A 174 LEU A 179 1 N TYR A 176 O LYS A 196 SHEET 3 A 8 CYS A 119 VAL A 123 1 N VAL A 120 O VAL A 175 SHEET 4 A 8 ILE A 227 ASP A 232 1 N HIS A 228 O CYS A 119 SHEET 5 A 8 LEU A 270 MET A 276 1 N SER A 271 O ILE A 227 SHEET 6 A 8 ILE A 93 LEU A 97 1 N SER A 94 O LEU A 273 SHEET 7 A 8 ILE A 8 GLY A 12 1 N GLU A 9 O ILE A 93 SHEET 8 A 8 VAL A 47 ASP A 52 1 N ARG A 48 O ILE A 8 SHEET 1 B 8 LYS B 196 SER B 199 0 SHEET 2 B 8 ILE B 174 LEU B 179 1 N TYR B 176 O LYS B 196 SHEET 3 B 8 CYS B 119 VAL B 123 1 N VAL B 120 O VAL B 175 SHEET 4 B 8 ILE B 227 ASP B 232 1 N HIS B 228 O CYS B 119 SHEET 5 B 8 LEU B 270 MET B 276 1 N SER B 271 O ILE B 227 SHEET 6 B 8 ILE B 93 LEU B 97 1 N SER B 94 O LEU B 273 SHEET 7 B 8 ILE B 8 GLY B 12 1 N GLU B 9 O ILE B 93 SHEET 8 B 8 VAL B 47 ASP B 52 1 N ARG B 48 O ILE B 8 SHEET 1 C 8 VAL C 47 ASP C 49 0 SHEET 2 C 8 ILE C 8 GLY C 12 1 N ILE C 8 O ARG C 48 SHEET 3 C 8 ILE C 93 LEU C 97 1 N ILE C 93 O GLU C 9 SHEET 4 C 8 LEU C 270 MET C 276 1 N LEU C 273 O SER C 94 SHEET 5 C 8 ILE C 227 ASP C 232 1 N ILE C 227 O SER C 271 SHEET 6 C 8 CYS C 119 VAL C 123 1 N CYS C 119 O HIS C 228 SHEET 7 C 8 ILE C 174 LEU C 179 1 N VAL C 175 O VAL C 120 SHEET 8 C 8 LYS C 196 SER C 199 1 N LYS C 196 O TYR C 176
LINK MN MN A 500 OD1 ASP A 124 1555 1555 2.05 LINK MN MN A 500 OD2 ASP A 234 1555 1555 2.28 LINK MN MN B 501 OD1 ASP B 124 1555 1555 2.23 LINK MN MN B 501 OD2 ASP B 232 1555 1555 2.39 LINK MN MN B 501 OD2 ASP B 234 1555 1555 2.21 LINK MN MN C 502 OD1 ASP C 124 1555 1555 2.01 LINK MN MN C 502 OD2 ASP C 232 1555 1555 2.33 LINK MN MN C 502 OD2 ASP C 234 1555 1555 2.17 LINK MN MN A 500 OD1 ASP A 234 1555 1555 2.46 LINK MN MN A 500 ND1 HIS A 126 1555 1555 2.51 LINK MN MN A 500 OD2 ASP A 232 1555 1555 2.43 LINK MN MN B 501 ND1 HIS B 126 1555 1555 2.43 LINK MN MN B 501 OD1 ASP B 234 1555 1555 2.66 LINK MN MN C 502 ND1 HIS C 126 1555 1555 2.65 LINK MN MN C 502 OD1 ASP C 234 1555 1555 2.61 LINK MN MN A 500 O HOH A 543 1555 1655 2.39
CISPEP 1 GLY A 98 GLY A 99 0 -0.04 CISPEP 2 GLY B 98 GLY B 99 0 0.07 CISPEP 3 GLY C 98 GLY C 99 0 -0.04
SITE 1 MNA 6 ASN A 101 ASP A 124 HIS A 126 ASP A 128 SITE 2 MNA 6 ASP A 232 ASP A 234 SITE 1 MNB 6 ASN B 101 ASP B 124 HIS B 126 ASP B 128 SITE 2 MNB 6 ASP B 232 ASP B 234 SITE 1 MNC 6 ASN C 101 ASP C 124 HIS C 126 ASP C 128 SITE 2 MNC 6 ASP C 232 ASP C 234 SITE 1 AC1 5 ASP A 124 HIS A 126 ASP A 232 ASP A 234 SITE 2 AC1 5 HOH A 543 SITE 1 AC2 4 ASP B 124 HIS B 126 ASP B 232 ASP B 234 SITE 1 AC3 4 ASP C 124 HIS C 126 ASP C 232 ASP C 234
CRYST1 88.900 88.900 105.100 90.00 90.00 120.00 P 32 9
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011249 0.006494 0.000000 0.00000
SCALE2 0.000000 0.012989 0.000000 0.00000
SCALE3 0.000000 0.000000 0.009515 0.00000
MTRIX1 1 -0.500790 -0.860961 -0.089199 88.38220 1
MTRIX2 1 0.851380 -0.471375 -0.230127 -51.22077 1
MTRIX3 1 0.156085 -0.191187 0.969064 -9.23558 1
MTRIX1 2 -0.509277 0.837838 0.196635 90.32870 1
MTRIX2 2 -0.858407 -0.478230 -0.185563 50.06401 1
MTRIX3 2 -0.061436 -0.263296 0.962757 3.83133 1