10 20 30 40 50 60 70 80 5LMY - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER VIRAL PROTEIN 02-AUG-16 5LMY
TITLE SOLUTION STRUCTURE OF THE M-PMV MYRISTOYLATED MATRIX PROTEIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: MATRIX PROTEIN P10; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: MYRISTOYLATED MATRIX PROTEIN OF MASON-PFIZER MONKEY COMPND 6 VIRUS. N-TERMINALY MYRISTOYLATED WITH C-TERMINAL EXTENSION WITH 20 AA COMPND 7 FROM PHOSPOHOPROTEIN (PP24) AND HIS-TAG.
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MASON-PFIZER MONKEY VIRUS; SOURCE 3 ORGANISM_COMMON: MPMV; SOURCE 4 ORGANISM_TAXID: 11855; SOURCE 5 GENE: GAG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008
KEYWDS MATRIX, M-PMV, MYRISTOYLATED, RETROVIRUS, VIRAL PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 15
AUTHOR J.PRCHAL,R.HRABAL
REVDAT 3 30-NOV-16 5LMY 1 JRNL REVDAT 2 19-OCT-16 5LMY 1 JRNL REVDAT 1 05-OCT-16 5LMY 0
SPRSDE 05-OCT-16 5LMY 2LPY
JRNL AUTH T.KROUPA,H.LANGEROVA,M.DOLEZAL,J.PRCHAL,V.SPIWOK,E.HUNTER, JRNL AUTH 2 M.RUMLOVA,R.HRABAL,T.RUML JRNL TITL MEMBRANE INTERACTIONS OF THE MASON-PFIZER MONKEY VIRUS JRNL TITL 2 MATRIX PROTEIN AND ITS BUDDING DEFICIENT MUTANTS. JRNL REF J.MOL.BIOL. V. 428 4708 2016 JRNL REFN ESSN 1089-8638 JRNL PMID 27725181 JRNL DOI 10.1016/J.JMB.2016.10.010
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.PRCHAL,P.SRB,E.HUNTER,T.RUML,R.HRABAL REMARK 1 TITL THE STRUCTURE OF MYRISTOYLATED MASON-PFIZER MONKEY VIRUS REMARK 1 TITL 2 MATRIX PROTEIN AND THE ROLE OF REMARK 1 TITL 3 PHOSPHATIDYLINOSITOL-(4,5)-BISPHOSPHATE IN ITS MEMBRANE REMARK 1 TITL 4 BINDING. REMARK 1 REF J. MOL. BIOL. V. 423 427 2012 REMARK 1 REFN ESSN 1089-8638 REMARK 1 PMID 22863803 REMARK 1 DOI 10.1016/J.JMB.2012.07.021
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.24 REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 5LMY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1200000601.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 6; 6 REMARK 210 IONIC STRENGTH : 600; 300 REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 1.2 MM [U-99% 13C; U-99% 15N] REMARK 210 MATRIX PROTEIN P10, 100 MM REMARK 210 POTASSIUM PHOSPHATE, 300 MM REMARK 210 SODIUM CHLORIDE, 5 MM DTT, 95% REMARK 210 H2O/5% D2O; 0.2 MM [U-99% 15N] REMARK 210 MATRIX PROTEIN P10, 50 MM REMARK 210 POTASSIUM PHOSPHATE, 150 MM REMARK 210 SODIUM CHLORIDE, 5 MM DTT, 10 MG/ REMARK 210 ML PF1 PHAGE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D HNCO; 3D HN(CO)CA; REMARK 210 3D HCCH-TOCSY; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY; 2D 1H-15N HSQC REMARK 210 IPAP REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCEIII REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3.5, X-PLOR NIH 2.24, REMARK 210 ANALYSIS 2.1.5, TALOS+ REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE21 GLN A 64 HD22 ASN A 68 1.23 REMARK 500 HG1 THR A 50 HE21 GLN A 98 1.27 REMARK 500 O GLU A 4 H GLN A 7 1.50 REMARK 500 O ARG A 10 H GLN A 14 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 14 -72.41 -70.30 REMARK 500 1 CYS A 42 65.46 33.93 REMARK 500 1 TRP A 44 23.53 -67.96 REMARK 500 1 PHE A 45 92.26 77.64 REMARK 500 1 VAL A 75 78.52 25.95 REMARK 500 1 ASN A 96 159.82 -40.03 REMARK 500 1 GLN A 98 -14.92 -44.64 REMARK 500 1 ALA A 104 -17.93 -44.11 REMARK 500 1 ASP A 117 -164.70 -55.20 REMARK 500 2 GLN A 14 -74.12 -69.97 REMARK 500 2 CYS A 42 58.86 36.85 REMARK 500 2 PRO A 46 -9.36 -47.45 REMARK 500 2 VAL A 75 79.23 28.71 REMARK 500 2 VAL A 95 -159.90 35.17 REMARK 500 2 PRO A 97 -19.95 -47.95 REMARK 500 2 GLN A 98 -20.83 -37.83 REMARK 500 2 GLN A 105 -78.82 56.61 REMARK 500 2 THR A 106 -162.36 -126.40 REMARK 500 2 GLU A 107 167.12 55.40 REMARK 500 3 GLU A 4 -19.56 -49.11 REMARK 500 3 GLN A 14 -74.90 -67.31 REMARK 500 3 ALA A 18 -16.80 -49.58 REMARK 500 3 CYS A 42 62.32 38.07 REMARK 500 3 TRP A 44 25.89 -65.73 REMARK 500 3 PHE A 45 97.02 62.48 REMARK 500 3 VAL A 75 80.29 27.48 REMARK 500 3 GLU A 94 55.17 -67.98 REMARK 500 3 GLN A 98 -15.62 -44.27 REMARK 500 3 LYS A 111 92.98 -35.16 REMARK 500 3 SER A 114 90.35 178.80 REMARK 500 3 GLN A 115 -149.20 -174.16 REMARK 500 3 LEU A 118 89.27 -168.32 REMARK 500 3 HIS A 120 3.93 56.63 REMARK 500 4 GLU A 4 -19.26 -44.38 REMARK 500 4 GLN A 14 -73.29 -72.78 REMARK 500 4 CYS A 42 60.31 36.45 REMARK 500 4 TRP A 44 20.61 -71.86 REMARK 500 4 PHE A 45 82.08 56.05 REMARK 500 4 VAL A 75 131.55 59.10 REMARK 500 4 PRO A 97 -16.86 -41.65 REMARK 500 4 GLN A 98 -13.65 -46.20 REMARK 500 5 GLN A 14 -78.64 -63.83 REMARK 500 5 CYS A 42 60.52 35.04 REMARK 500 5 PRO A 46 -6.29 -48.09 REMARK 500 5 THR A 69 -19.54 -49.52 REMARK 500 5 VAL A 75 85.00 29.98 REMARK 500 5 GLU A 94 30.05 -69.65 REMARK 500 5 VAL A 95 -155.40 34.08 REMARK 500 5 GLN A 98 -20.48 -37.64 REMARK 500 5 ALA A 104 -9.58 -52.72 REMARK 500 REMARK 500 THIS ENTRY HAS 149 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18282 RELATED DB: BMRB REMARK 900 WE HAVE ASSIGNED SOME ADITIONAL RESONANCES OF 2LPY STRUCTURE AND REMARK 900 MEASURED RDCS ON THE SAME PROTEIN, THAT WERE USED TO FURTHER REMARK 900 IMPROVE THE STRUCTURE. REMARK 900 RELATED ID: 34029 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE M-PMV MYRISTOYLATED MATRIX PROTEIN
DBREF 5LMY A 2 118 UNP P07567 GAG_MPMV 2 118
SEQADV 5LMY MYR A 1 UNP P07567 EXPRESSION TAG SEQADV 5LMY GLU A 119 UNP P07567 EXPRESSION TAG SEQADV 5LMY HIS A 120 UNP P07567 EXPRESSION TAG SEQADV 5LMY HIS A 121 UNP P07567 EXPRESSION TAG SEQADV 5LMY HIS A 122 UNP P07567 EXPRESSION TAG SEQADV 5LMY HIS A 123 UNP P07567 EXPRESSION TAG SEQADV 5LMY HIS A 124 UNP P07567 EXPRESSION TAG SEQADV 5LMY HIS A 125 UNP P07567 EXPRESSION TAG
SEQRES 1 A 125 MYR GLY GLN GLU LEU SER GLN HIS GLU ARG TYR VAL GLU SEQRES 2 A 125 GLN LEU LYS GLN ALA LEU LYS THR ARG GLY VAL LYS VAL SEQRES 3 A 125 LYS TYR ALA ASP LEU LEU LYS PHE PHE ASP PHE VAL LYS SEQRES 4 A 125 ASP THR CYS PRO TRP PHE PRO GLN GLU GLY THR ILE ASP SEQRES 5 A 125 ILE LYS ARG TRP ARG ARG VAL GLY ASP CYS PHE GLN ASP SEQRES 6 A 125 TYR TYR ASN THR PHE GLY PRO GLU LYS VAL PRO VAL THR SEQRES 7 A 125 ALA PHE SER TYR TRP ASN LEU ILE LYS GLU LEU ILE ASP SEQRES 8 A 125 LYS LYS GLU VAL ASN PRO GLN VAL MET ALA ALA VAL ALA SEQRES 9 A 125 GLN THR GLU GLU ILE LEU LYS SER ASN SER GLN THR ASP SEQRES 10 A 125 LEU GLU HIS HIS HIS HIS HIS HIS
HET MYR A 1 42
HETNAM MYR MYRISTIC ACID
FORMUL 1 MYR C14 H28 O2
HELIX 1 AA1 GLY A 2 GLU A 4 5 3 HELIX 2 AA2 LEU A 5 THR A 21 1 17 HELIX 3 AA3 LYS A 27 CYS A 42 1 16 HELIX 4 AA4 ASP A 52 PHE A 70 1 19 HELIX 5 AA5 THR A 78 ILE A 90 1 13 HELIX 6 AA6 PRO A 97 VAL A 103 1 7 HELIX 7 AA7 ALA A 104 THR A 106 5 3
LINK C1 MYR A 1 N GLY A 2 1555 1555 1.33
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000