10 20 30 40 50 60 70 80 5F11 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 28-NOV-15 5F11
TITLE CRYSTAL STRUCTURE OF FRUCTOKINASE FROM VIBRIO CHOLERAE O395 IN TITLE 2 FRUCTOSE BOUND FORM
COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRUCTOKINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.1.4; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE SEROTYPE O1 (STRAIN ATCC 39541 SOURCE 3 / CLASSICAL OGAWA 395 / O395); SOURCE 4 ORGANISM_TAXID: 345073; SOURCE 5 STRAIN: ATCC 39541 / CLASSICAL OGAWA 395 / O395; SOURCE 6 GENE: CSCK, VC0395_0600; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PET-28A+
KEYWDS KINASE, FRUCTOSE, SODIUM, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR R.PAUL,S.NATH,U.SEN
REVDAT 1 30-NOV-16 5F11 0
JRNL AUTH R.PAUL,S.NATH,U.SEN JRNL TITL CRYSTAL STRUCTURE OF FRUCTOKINASE FROM VIBRIO CHOLERAE O395 JRNL TITL 2 IN APO FORM JRNL REF TO BE PUBLISHED
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.PAUL,S.NATH,U.SEN REMARK 1 TITL CLONING, EXPRESSION, PURIFICATION, CRYSTALLIZATION AND REMARK 1 TITL 2 PRELIMINARY X-RAY ANALYSIS OF A FRUCTOKINASE FROM VIBRIO REMARK 1 TITL 3 CHOLERAE O395 REMARK 1 REF ACTA CRYSTALLOGR. SECT. F V. 68 1564 2012 REMARK 1 REF 2 STRUCT. BIOL. CRYST. COMMUN. REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 23192049 REMARK 1 DOI 10.1107/S1744309112047598
REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 14231 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 726 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.6686 - 3.9293 0.93 2783 126 0.1558 0.2095 REMARK 3 2 3.9293 - 3.1205 0.93 2616 140 0.1793 0.2575 REMARK 3 3 3.1205 - 2.7266 0.98 2706 176 0.2074 0.2758 REMARK 3 4 2.7266 - 2.4775 0.98 2733 141 0.2217 0.2885 REMARK 3 5 2.4775 - 2.3001 0.96 2667 143 0.2358 0.3236 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2404 REMARK 3 ANGLE : 1.094 3272 REMARK 3 CHIRALITY : 0.069 373 REMARK 3 PLANARITY : 0.005 429 REMARK 3 DIHEDRAL : 15.907 847 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.6274 6.6249 -5.3146 REMARK 3 T TENSOR REMARK 3 T11: 0.2842 T22: 0.3259 REMARK 3 T33: 0.0883 T12: 0.0430 REMARK 3 T13: 0.0193 T23: -0.0561 REMARK 3 L TENSOR REMARK 3 L11: 4.0955 L22: 3.3548 REMARK 3 L33: 3.9323 L12: 0.3634 REMARK 3 L13: 2.1048 L23: -0.4715 REMARK 3 S TENSOR REMARK 3 S11: -0.0227 S12: -0.4741 S13: 0.3700 REMARK 3 S21: 0.2981 S22: 0.0344 S23: -0.1160 REMARK 3 S31: 0.3158 S32: 0.1336 S33: 0.0223 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.3491 6.1901 -13.3723 REMARK 3 T TENSOR REMARK 3 T11: 0.2081 T22: 0.3506 REMARK 3 T33: 0.1320 T12: 0.0440 REMARK 3 T13: 0.0040 T23: -0.0135 REMARK 3 L TENSOR REMARK 3 L11: 1.5514 L22: 1.6552 REMARK 3 L33: 2.4301 L12: -0.1623 REMARK 3 L13: -0.0100 L23: -0.4781 REMARK 3 S TENSOR REMARK 3 S11: 0.0325 S12: -0.0451 S13: -0.0798 REMARK 3 S21: -0.0013 S22: -0.0924 S23: -0.0614 REMARK 3 S31: 0.2699 S32: 0.1924 S33: 0.0648 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 183 THROUGH 244 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.2962 26.9921 -16.3110 REMARK 3 T TENSOR REMARK 3 T11: 0.3018 T22: 0.3493 REMARK 3 T33: 0.2224 T12: -0.0777 REMARK 3 T13: -0.0593 T23: 0.0447 REMARK 3 L TENSOR REMARK 3 L11: 3.9749 L22: 1.9159 REMARK 3 L33: 4.4231 L12: -1.5457 REMARK 3 L13: -1.4657 L23: 0.0073 REMARK 3 S TENSOR REMARK 3 S11: 0.0237 S12: -0.0818 S13: 0.3951 REMARK 3 S21: 0.0127 S22: 0.0070 S23: -0.3218 REMARK 3 S31: -0.5617 S32: 0.2128 S33: 0.0290 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 245 THROUGH 323 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.8903 19.9241 -0.4265 REMARK 3 T TENSOR REMARK 3 T11: 0.2311 T22: 0.3582 REMARK 3 T33: 0.1839 T12: 0.0518 REMARK 3 T13: -0.0246 T23: -0.0238 REMARK 3 L TENSOR REMARK 3 L11: 1.3900 L22: 2.8335 REMARK 3 L33: 2.4262 L12: -1.3155 REMARK 3 L13: -0.4528 L23: -1.4533 REMARK 3 S TENSOR REMARK 3 S11: -0.2473 S12: -0.3021 S13: -0.0901 REMARK 3 S21: 0.3333 S22: 0.1755 S23: 0.0094 REMARK 3 S31: -0.2283 S32: -0.0156 S33: 0.1073 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 5F11 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215811.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15710 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.13 REMARK 200 R MERGE FOR SHELL (I) : 0.20000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1TZ6 REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% PEG 6000, 0.1M MES, PH 6.0, 7 DAYS, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 58.76650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.44850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 58.76650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.44850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 641 LIES ON A SPECIAL POSITION.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ALA A 3 REMARK 465 LEU A 4 REMARK 465 VAL A 5 REMARK 465 ARG A 6 REMARK 465 LEU A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 ASN A 10 REMARK 465 HIS A 11 REMARK 465 ILE A 12 REMARK 465 PHE A 13 REMARK 465 ARG A 14 REMARK 465 SER A 15
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 638 O HOH A 663 1.90 REMARK 500 OE1 GLU A 217 O HOH A 501 2.06 REMARK 500 OG SER A 128 O HOH A 502 2.06 REMARK 500 O HOH A 618 O HOH A 676 2.11 REMARK 500 O HOH A 503 O HOH A 603 2.13 REMARK 500 O HOH A 628 O HOH A 632 2.13 REMARK 500 OG SER A 58 O HOH A 503 2.16 REMARK 500 O GLY A 167 O HOH A 504 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 571 O HOH A 638 1556 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 18 100.18 -171.21 REMARK 500 ASP A 34 -100.36 -144.50 REMARK 500 GLN A 36 -58.61 -160.93 REMARK 500 VAL A 95 -35.47 -134.94 REMARK 500 SER A 215 161.24 70.53 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 302 O REMARK 620 2 GLN A 305 O 89.2 REMARK 620 3 GLY A 307 O 121.2 80.8 REMARK 620 4 HOH A 566 O 56.3 94.6 67.0 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FRU A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 402
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5F0Z RELATED DB: PDB REMARK 900 5F0Z CONTAINS SAME PROTEIN IN FRUCTOSE+ADP +CALCIUM BOUND FORM REMARK 900 RELATED ID: 5EYN RELATED DB: PDB REMARK 900 5EYN CONTAINS SAME PROTEIN IN FRUCTOSE+ADP+BEF3 +CALCIUM BOUND FORM REMARK 900 RELATED ID: 5EY7 RELATED DB: PDB REMARK 900 5EY7 CONTAINS SAME PROTEIN IN APO FORM
DBREF1 5F11 A 1 323 UNP A0A0H3AER7_VIBC3
DBREF2 5F11 A A0A0H3AER7 1 323
SEQRES 1 A 323 MET LYS ALA LEU VAL ARG LEU SER SER ASN HIS ILE PHE SEQRES 2 A 323 ARG SER ASP SER MET SER ARG VAL TRP LEU THR GLY ASP SEQRES 3 A 323 ALA VAL VAL ASP LEU ILE PRO ASP GLY GLN GLN HIS TYR SEQRES 4 A 323 LEU LYS CYS PRO GLY GLY ALA PRO ALA ASN VAL ALA VAL SEQRES 5 A 323 ALA ILE ALA ARG LEU SER GLY ARG SER ALA PHE PHE GLY SEQRES 6 A 323 ARG VAL GLY ASN ASP PRO PHE GLY ARG PHE MET GLN GLN SEQRES 7 A 323 THR LEU THR ASP GLU GLN VAL ASP CYS GLN HIS LEU HIS SEQRES 8 A 323 PHE ASP PRO VAL HIS ARG THR SER THR VAL VAL VAL ASP SEQRES 9 A 323 LEU ASP GLU HIS GLY GLU ARG SER PHE THR PHE MET VAL SEQRES 10 A 323 LYS PRO SER ALA ASP GLN PHE LEU GLN LEU SER ASP ILE SEQRES 11 A 323 PRO SER PHE GLN LYS GLY GLU TRP LEU HIS VAL CYS SER SEQRES 12 A 323 ILE ALA LEU ALA ASN GLN PRO SER ARG SER SER THR PHE SEQRES 13 A 323 ALA ALA ILE ALA GLN MET LYS GLU VAL GLY GLY TYR VAL SEQRES 14 A 323 SER PHE ASP PRO ASN LEU ARG GLU GLU VAL TRP SER GLU SEQRES 15 A 323 PRO GLN GLU LEU GLN ALA THR VAL MET ARG ALA VAL GLY SEQRES 16 A 323 LEU ALA ASP VAL VAL LYS PHE SER GLU GLU GLU LEU GLN SEQRES 17 A 323 PHE LEU THR GLY THR GLN SER ILE GLU GLU GLY LEU GLN SEQRES 18 A 323 ALA ILE ALA ASP PHE GLN ILE PRO LEU VAL VAL VAL THR SEQRES 19 A 323 LEU GLY ALA LYS GLY ALA LEU VAL ALA THR PRO ASN SER SEQRES 20 A 323 GLN GLN ILE VAL SER GLY LYS ALA VAL LYS PRO ILE ASP SEQRES 21 A 323 THR THR GLY ALA GLY ASP ALA PHE VAL GLY GLY LEU LEU SEQRES 22 A 323 TYR ARG LEU SER VAL ALA GLN ASP TRP HIS ASN GLN ALA SEQRES 23 A 323 THR ILE LEU ASP ALA VAL LYS TRP ALA ASN GLY CYS GLY SEQRES 24 A 323 ALA LEU ALA THR THR GLN LYS GLY ALA MET THR ALA LEU SEQRES 25 A 323 PRO ASN GLN ALA ALA LEU TYR ALA PHE LEU GLU
HET FRU A 401 12 HET NA A 402 1
HETNAM FRU FRUCTOSE HETNAM NA SODIUM ION
FORMUL 2 FRU C6 H12 O6 FORMUL 3 NA NA 1+ FORMUL 4 HOH *203(H2 O)
HELIX 1 AA1 GLY A 45 LEU A 57 1 13 HELIX 2 AA2 ASP A 70 GLU A 83 1 14 HELIX 3 AA3 HIS A 108 ARG A 111 5 4 HELIX 4 AA4 SER A 120 LEU A 125 5 6 HELIX 5 AA5 GLN A 126 ILE A 130 5 5 HELIX 6 AA6 ILE A 144 ALA A 147 5 4 HELIX 7 AA7 PRO A 150 GLY A 166 1 17 HELIX 8 AA8 ARG A 176 TRP A 180 5 5 HELIX 9 AA9 GLU A 182 GLN A 184 5 3 HELIX 10 AB1 GLU A 185 GLY A 195 1 11 HELIX 11 AB2 GLU A 204 THR A 211 1 8 HELIX 12 AB3 SER A 215 ALA A 222 1 8 HELIX 13 AB4 ILE A 223 GLN A 227 5 5 HELIX 14 AB5 GLY A 236 LYS A 238 5 3 HELIX 15 AB6 GLY A 263 VAL A 278 1 16 HELIX 16 AB7 ASN A 284 ALA A 302 1 19 HELIX 17 AB8 THR A 303 GLN A 305 5 3 HELIX 18 AB9 ASN A 314 GLU A 323 1 10
SHEET 1 AA1 9 ASP A 86 ASP A 93 0 SHEET 2 AA1 9 SER A 61 GLY A 68 1 N GLY A 65 O HIS A 91 SHEET 3 AA1 9 VAL A 21 THR A 24 1 N LEU A 23 O ALA A 62 SHEET 4 AA1 9 TRP A 138 CYS A 142 1 O TRP A 138 N TRP A 22 SHEET 5 AA1 9 TYR A 168 ASP A 172 1 O SER A 170 N LEU A 139 SHEET 6 AA1 9 VAL A 199 SER A 203 1 O VAL A 199 N PHE A 171 SHEET 7 AA1 9 LEU A 230 THR A 234 1 O VAL A 232 N VAL A 200 SHEET 8 AA1 9 ALA A 240 THR A 244 -1 O LEU A 241 N VAL A 233 SHEET 9 AA1 9 SER A 247 VAL A 251 -1 O VAL A 251 N ALA A 240 SHEET 1 AA2 4 TYR A 39 GLY A 44 0 SHEET 2 AA2 4 VAL A 28 PRO A 33 -1 N ILE A 32 O LEU A 40 SHEET 3 AA2 4 SER A 99 VAL A 103 1 O VAL A 101 N LEU A 31 SHEET 4 AA2 4 PHE A 113 PHE A 115 -1 O THR A 114 N VAL A 102
LINK O ALA A 302 NA NA A 402 1555 1555 2.69 LINK O GLN A 305 NA NA A 402 1555 1555 2.71 LINK O GLY A 307 NA NA A 402 1555 1555 2.61 LINK NA NA A 402 O HOH A 566 1555 1555 3.02
CISPEP 1 LYS A 118 PRO A 119 0 -3.82 CISPEP 2 GLN A 149 PRO A 150 0 5.75
SITE 1 AC1 10 ASP A 26 VAL A 28 ASP A 30 GLY A 45 SITE 2 AC1 10 ALA A 46 ASN A 49 PHE A 113 ARG A 176 SITE 3 AC1 10 ASP A 266 HOH A 543 SITE 1 AC2 6 ASP A 260 THR A 262 ALA A 302 GLN A 305 SITE 2 AC2 6 GLY A 307 HOH A 566
CRYST1 117.533 64.897 41.953 90.00 90.00 90.00 P 21 21 2 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008508 0.000000 0.000000 0.00000
SCALE2 0.000000 0.015409 0.000000 0.00000
SCALE3 0.000000 0.000000 0.023836 0.00000