10 20 30 40 50 60 70 80 5EY7 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 24-NOV-15 5EY7
TITLE CRYSTAL STRUCTURE OF FRUCTOKINASE FROM VIBRIO CHOLERAE O395 IN APO TITLE 2 FORM
COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRUCTOKINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.1.4; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: VIBRIO CHOLERAE O395 FRUCTOKINASE IN APO FORM
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE SEROTYPE O1 (STRAIN ATCC 39541 SOURCE 3 / CLASSICAL OGAWA 395 / O395); SOURCE 4 ORGANISM_TAXID: 345073; SOURCE 5 STRAIN: ATCC 39541 / CLASSICAL OGAWA 395 / O395; SOURCE 6 GENE: CSCK, VC0395_0600; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)
KEYWDS KINASE, FRUCTOSE PHOSPHORYLATION, APO, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR R.PAUL,S.NATH,U.SEN
REVDAT 1 30-NOV-16 5EY7 0
JRNL AUTH R.PAUL,S.NATH,U.SEN JRNL TITL CRYSTAL STRUCTURE OF FRUCTOKINASE FROM VIBRIO CHOLERAE O395 JRNL TITL 2 IN APO FORM JRNL REF TO BE PUBLISHED
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.PAUL,S.NATH,U.SEN REMARK 1 TITL CLONING, EXPRESSION, PURIFICATION, CRYSTALLIZATION AND REMARK 1 TITL 2 PRELIMINARY X-RAY ANALYSIS OF A FRUCTOKINASE FROM VIBRIO REMARK 1 TITL 3 CHOLERAE O395. REMARK 1 REF ACTA CRYSTALLOGR. SECT. F V. 68 1564 2012 REMARK 1 REF 2 STRUCT. BIOL. CRYST. COMMUN. REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 23192049 REMARK 1 DOI 10.1107/S1744309112047598
REMARK 2 REMARK 2 RESOLUTION. 2.46 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 23398 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1172 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.4112 - 4.9147 0.89 2743 150 0.1700 0.1776 REMARK 3 2 4.9147 - 3.9038 0.94 2780 142 0.1683 0.1991 REMARK 3 3 3.9038 - 3.4112 0.96 2801 148 0.2088 0.2517 REMARK 3 4 3.4112 - 3.0997 0.97 2819 148 0.2426 0.2680 REMARK 3 5 3.0997 - 2.8777 0.98 2826 150 0.2856 0.3213 REMARK 3 6 2.8777 - 2.7082 0.98 2822 155 0.2767 0.3078 REMARK 3 7 2.7082 - 2.5726 0.98 2817 141 0.2898 0.2870 REMARK 3 8 2.5726 - 2.4607 0.91 2618 138 0.3359 0.4033 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4640 REMARK 3 ANGLE : 0.737 6313 REMARK 3 CHIRALITY : 0.029 716 REMARK 3 PLANARITY : 0.003 833 REMARK 3 DIHEDRAL : 15.902 1647 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 17 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5410 27.4195 -28.2499 REMARK 3 T TENSOR REMARK 3 T11: 0.4748 T22: 0.9919 REMARK 3 T33: 0.4160 T12: 0.0086 REMARK 3 T13: 0.0140 T23: -0.0990 REMARK 3 L TENSOR REMARK 3 L11: 1.7308 L22: 1.7732 REMARK 3 L33: 8.2484 L12: -0.6474 REMARK 3 L13: -0.1953 L23: -1.5124 REMARK 3 S TENSOR REMARK 3 S11: -0.2935 S12: -0.9432 S13: -0.2124 REMARK 3 S21: 0.2761 S22: 0.0685 S23: -0.0808 REMARK 3 S31: 0.5977 S32: 0.5408 S33: 0.5609 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 46 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4904 34.9097 -34.4140 REMARK 3 T TENSOR REMARK 3 T11: 0.4957 T22: 0.8207 REMARK 3 T33: 0.5116 T12: -0.0875 REMARK 3 T13: -0.0009 T23: -0.2438 REMARK 3 L TENSOR REMARK 3 L11: 2.4979 L22: 2.1967 REMARK 3 L33: 3.6898 L12: -0.5537 REMARK 3 L13: 0.8892 L23: -0.0348 REMARK 3 S TENSOR REMARK 3 S11: -0.1429 S12: -0.6978 S13: 0.8040 REMARK 3 S21: 0.2632 S22: 0.1344 S23: -0.4239 REMARK 3 S31: -0.5527 S32: 0.4129 S33: -0.0946 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.4013 27.5232 -34.9872 REMARK 3 T TENSOR REMARK 3 T11: 0.4096 T22: 0.6104 REMARK 3 T33: 0.3470 T12: -0.0357 REMARK 3 T13: 0.0141 T23: -0.0581 REMARK 3 L TENSOR REMARK 3 L11: 3.7809 L22: 1.3648 REMARK 3 L33: 4.1203 L12: -2.0265 REMARK 3 L13: 0.0635 L23: 0.7868 REMARK 3 S TENSOR REMARK 3 S11: -0.2529 S12: -0.9170 S13: -0.1373 REMARK 3 S21: 0.4206 S22: 0.2549 S23: 0.1791 REMARK 3 S31: 0.1021 S32: -0.1579 S33: -0.0615 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 151 THROUGH 196 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.6575 24.6095 -44.4583 REMARK 3 T TENSOR REMARK 3 T11: 0.3998 T22: 0.5159 REMARK 3 T33: 0.3904 T12: -0.0433 REMARK 3 T13: -0.0062 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 4.3715 L22: 2.7459 REMARK 3 L33: 3.4129 L12: -0.3989 REMARK 3 L13: -0.9439 L23: 1.5951 REMARK 3 S TENSOR REMARK 3 S11: -0.0056 S12: -0.3143 S13: -0.4245 REMARK 3 S21: 0.3920 S22: -0.1669 S23: 0.1744 REMARK 3 S31: 0.1207 S32: -0.1461 S33: 0.1744 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 197 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.6991 9.1752 -44.7254 REMARK 3 T TENSOR REMARK 3 T11: 0.4321 T22: 0.6514 REMARK 3 T33: 0.9139 T12: -0.0251 REMARK 3 T13: 0.0335 T23: 0.1117 REMARK 3 L TENSOR REMARK 3 L11: 3.1426 L22: 4.0366 REMARK 3 L33: 2.1546 L12: -0.2286 REMARK 3 L13: -1.1812 L23: 0.2646 REMARK 3 S TENSOR REMARK 3 S11: -0.0561 S12: -0.3911 S13: -1.6754 REMARK 3 S21: 0.1001 S22: -0.0251 S23: 0.6427 REMARK 3 S31: 0.2071 S32: -0.5507 S33: 0.0479 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 263 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.0087 7.7305 -39.0019 REMARK 3 T TENSOR REMARK 3 T11: 0.6615 T22: 0.5901 REMARK 3 T33: 1.0183 T12: -0.0514 REMARK 3 T13: 0.0348 T23: 0.1459 REMARK 3 L TENSOR REMARK 3 L11: 5.4564 L22: 6.3350 REMARK 3 L33: 3.9209 L12: -1.1066 REMARK 3 L13: -0.3988 L23: 1.0173 REMARK 3 S TENSOR REMARK 3 S11: 0.3696 S12: -0.5875 S13: -1.4792 REMARK 3 S21: 0.8716 S22: -0.3413 S23: 0.2969 REMARK 3 S31: 0.5803 S32: 0.2610 S33: -0.0945 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 264 THROUGH 323 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.7832 15.7872 -40.2128 REMARK 3 T TENSOR REMARK 3 T11: 0.3416 T22: 0.6570 REMARK 3 T33: 0.4898 T12: 0.0173 REMARK 3 T13: 0.0120 T23: 0.0224 REMARK 3 L TENSOR REMARK 3 L11: 3.9853 L22: 1.9932 REMARK 3 L33: 2.8992 L12: 0.3527 REMARK 3 L13: -0.8413 L23: 0.4691 REMARK 3 S TENSOR REMARK 3 S11: -0.0929 S12: -0.4878 S13: -0.6667 REMARK 3 S21: 0.1945 S22: 0.0050 S23: -0.1946 REMARK 3 S31: 0.1015 S32: -0.0329 S33: 0.1414 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 17 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.1865 32.3114 -6.8336 REMARK 3 T TENSOR REMARK 3 T11: 0.4063 T22: 0.7716 REMARK 3 T33: 0.3672 T12: -0.0280 REMARK 3 T13: -0.0170 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 8.2279 L22: 2.5012 REMARK 3 L33: 3.6521 L12: -1.1550 REMARK 3 L13: -2.8156 L23: 1.1014 REMARK 3 S TENSOR REMARK 3 S11: -0.1166 S12: -0.3792 S13: 0.0352 REMARK 3 S21: -0.1564 S22: 0.0557 S23: -0.1455 REMARK 3 S31: -0.0422 S32: 1.0958 S33: 0.1642 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 46 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.5843 33.4057 -8.6294 REMARK 3 T TENSOR REMARK 3 T11: 0.3584 T22: 0.4871 REMARK 3 T33: 0.3390 T12: -0.0489 REMARK 3 T13: 0.0146 T23: -0.0232 REMARK 3 L TENSOR REMARK 3 L11: 2.5655 L22: 1.6530 REMARK 3 L33: 3.0766 L12: -0.5789 REMARK 3 L13: 0.6716 L23: 0.8180 REMARK 3 S TENSOR REMARK 3 S11: -0.1611 S12: 0.2339 S13: 0.1763 REMARK 3 S21: -0.1642 S22: 0.1483 S23: -0.0564 REMARK 3 S31: -0.0006 S32: 0.4740 S33: 0.0249 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 165 THROUGH 264 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.1707 52.6338 -0.8260 REMARK 3 T TENSOR REMARK 3 T11: 0.8315 T22: 0.5862 REMARK 3 T33: 0.8955 T12: -0.0497 REMARK 3 T13: -0.1610 T23: -0.0690 REMARK 3 L TENSOR REMARK 3 L11: 1.6546 L22: 2.9634 REMARK 3 L33: 5.0921 L12: 0.1889 REMARK 3 L13: 1.2675 L23: 0.5027 REMARK 3 S TENSOR REMARK 3 S11: -0.2554 S12: 0.0182 S13: 1.1182 REMARK 3 S21: 0.1539 S22: -0.0171 S23: -0.4064 REMARK 3 S31: -1.5151 S32: 0.2507 S33: 0.3556 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 265 THROUGH 307 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.3883 42.2655 10.6794 REMARK 3 T TENSOR REMARK 3 T11: 0.6059 T22: 0.5362 REMARK 3 T33: 0.5251 T12: -0.0310 REMARK 3 T13: -0.0706 T23: -0.1465 REMARK 3 L TENSOR REMARK 3 L11: 1.4693 L22: 2.4589 REMARK 3 L33: 2.4063 L12: 0.3263 REMARK 3 L13: 1.4871 L23: -0.5021 REMARK 3 S TENSOR REMARK 3 S11: 0.0877 S12: -0.4596 S13: 0.5226 REMARK 3 S21: 0.1639 S22: -0.1155 S23: 0.0870 REMARK 3 S31: -0.4228 S32: 0.0168 S33: -0.0046 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 5EY7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215693.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOMAR REMARK 200 DATA SCALING SOFTWARE : AUTOMAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23435 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 2.730 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.76 REMARK 200 R MERGE FOR SHELL (I) : 0.20000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1TZ6 REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% PEG 6000, 0.1M MES, PH 6.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 53.55800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.92900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 53.55800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.92900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ALA A 3 REMARK 465 LEU A 4 REMARK 465 VAL A 5 REMARK 465 ARG A 6 REMARK 465 LEU A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 ASN A 10 REMARK 465 HIS A 11 REMARK 465 ILE A 12 REMARK 465 PHE A 13 REMARK 465 ARG A 14 REMARK 465 SER A 15 REMARK 465 ASP A 16 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 ALA B 3 REMARK 465 LEU B 4 REMARK 465 VAL B 5 REMARK 465 ARG B 6 REMARK 465 LEU B 7 REMARK 465 SER B 8 REMARK 465 SER B 9 REMARK 465 ASN B 10 REMARK 465 HIS B 11 REMARK 465 ILE B 12 REMARK 465 PHE B 13 REMARK 465 ARG B 14 REMARK 465 SER B 15 REMARK 465 ASP B 16 REMARK 465 ALA B 308 REMARK 465 MET B 309 REMARK 465 THR B 310 REMARK 465 ALA B 311 REMARK 465 LEU B 312 REMARK 465 PRO B 313 REMARK 465 ASN B 314 REMARK 465 GLN B 315 REMARK 465 ALA B 316 REMARK 465 ALA B 317 REMARK 465 LEU B 318 REMARK 465 TYR B 319 REMARK 465 ALA B 320 REMARK 465 PHE B 321 REMARK 465 LEU B 322 REMARK 465 GLU B 323
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 95 -47.79 -131.87 REMARK 500 ASP A 104 -161.75 -124.49 REMARK 500 GLU A 110 -147.73 -124.98 REMARK 500 PRO A 173 62.13 -68.56 REMARK 500 ASN A 174 86.34 -66.96 REMARK 500 LEU A 235 35.15 -92.99 REMARK 500 VAL A 256 -151.15 -131.90 REMARK 500 ASP A 260 97.58 -170.69 REMARK 500 THR A 262 108.65 -58.66 REMARK 500 THR A 303 35.98 -91.07 REMARK 500 MET B 18 -47.64 69.56 REMARK 500 ASP B 34 52.87 -92.74 REMARK 500 ASN B 174 69.82 -62.75 REMARK 500 THR B 211 81.50 58.16 REMARK 500 THR B 213 38.40 -76.56 REMARK 500 GLN B 214 -15.73 65.80 REMARK 500 GLU B 217 -75.00 -75.42 REMARK 500 ILE B 223 0.06 -65.21 REMARK 500 SER B 247 -166.47 -103.13 REMARK 500 LYS B 254 63.88 -6.01 REMARK 500 ALA B 255 85.21 -161.57 REMARK 500 VAL B 256 37.43 32.83 REMARK 500 LYS B 257 88.77 52.77 REMARK 500 PRO B 258 -102.51 -59.00 REMARK 500 GLN B 305 44.35 -87.16 REMARK 500 LYS B 306 -6.81 63.07 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 260 O REMARK 620 2 ASP A 260 OD2 84.8 REMARK 620 3 THR A 262 O 97.7 97.8 REMARK 620 4 ALA A 302 O 86.5 145.2 116.8 REMARK 620 5 GLN A 305 O 88.5 68.5 164.4 77.7 REMARK 620 6 GLY A 307 O 164.8 81.4 90.6 101.2 80.4 REMARK 620 N 1 2 3 4 5
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 401
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5EYN RELATED DB: PDB REMARK 900 RELATED ID: 5F0Z RELATED DB: PDB REMARK 900 RELATED ID: 5F11 RELATED DB: PDB
DBREF1 5EY7 A 1 323 UNP A0A0H3AER7_VIBC3
DBREF2 5EY7 A A0A0H3AER7 1 323
DBREF1 5EY7 B 1 323 UNP A0A0H3AER7_VIBC3
DBREF2 5EY7 B A0A0H3AER7 1 323
SEQRES 1 A 323 MET LYS ALA LEU VAL ARG LEU SER SER ASN HIS ILE PHE SEQRES 2 A 323 ARG SER ASP SER MET SER ARG VAL TRP LEU THR GLY ASP SEQRES 3 A 323 ALA VAL VAL ASP LEU ILE PRO ASP GLY GLN GLN HIS TYR SEQRES 4 A 323 LEU LYS CYS PRO GLY GLY ALA PRO ALA ASN VAL ALA VAL SEQRES 5 A 323 ALA ILE ALA ARG LEU SER GLY ARG SER ALA PHE PHE GLY SEQRES 6 A 323 ARG VAL GLY ASN ASP PRO PHE GLY ARG PHE MET GLN GLN SEQRES 7 A 323 THR LEU THR ASP GLU GLN VAL ASP CYS GLN HIS LEU HIS SEQRES 8 A 323 PHE ASP PRO VAL HIS ARG THR SER THR VAL VAL VAL ASP SEQRES 9 A 323 LEU ASP GLU HIS GLY GLU ARG SER PHE THR PHE MET VAL SEQRES 10 A 323 LYS PRO SER ALA ASP GLN PHE LEU GLN LEU SER ASP ILE SEQRES 11 A 323 PRO SER PHE GLN LYS GLY GLU TRP LEU HIS VAL CYS SER SEQRES 12 A 323 ILE ALA LEU ALA ASN GLN PRO SER ARG SER SER THR PHE SEQRES 13 A 323 ALA ALA ILE ALA GLN MET LYS GLU VAL GLY GLY TYR VAL SEQRES 14 A 323 SER PHE ASP PRO ASN LEU ARG GLU GLU VAL TRP SER GLU SEQRES 15 A 323 PRO GLN GLU LEU GLN ALA THR VAL MET ARG ALA VAL GLY SEQRES 16 A 323 LEU ALA ASP VAL VAL LYS PHE SER GLU GLU GLU LEU GLN SEQRES 17 A 323 PHE LEU THR GLY THR GLN SER ILE GLU GLU GLY LEU GLN SEQRES 18 A 323 ALA ILE ALA ASP PHE GLN ILE PRO LEU VAL VAL VAL THR SEQRES 19 A 323 LEU GLY ALA LYS GLY ALA LEU VAL ALA THR PRO ASN SER SEQRES 20 A 323 GLN GLN ILE VAL SER GLY LYS ALA VAL LYS PRO ILE ASP SEQRES 21 A 323 THR THR GLY ALA GLY ASP ALA PHE VAL GLY GLY LEU LEU SEQRES 22 A 323 TYR ARG LEU SER VAL ALA GLN ASP TRP HIS ASN GLN ALA SEQRES 23 A 323 THR ILE LEU ASP ALA VAL LYS TRP ALA ASN GLY CYS GLY SEQRES 24 A 323 ALA LEU ALA THR THR GLN LYS GLY ALA MET THR ALA LEU SEQRES 25 A 323 PRO ASN GLN ALA ALA LEU TYR ALA PHE LEU GLU SEQRES 1 B 323 MET LYS ALA LEU VAL ARG LEU SER SER ASN HIS ILE PHE SEQRES 2 B 323 ARG SER ASP SER MET SER ARG VAL TRP LEU THR GLY ASP SEQRES 3 B 323 ALA VAL VAL ASP LEU ILE PRO ASP GLY GLN GLN HIS TYR SEQRES 4 B 323 LEU LYS CYS PRO GLY GLY ALA PRO ALA ASN VAL ALA VAL SEQRES 5 B 323 ALA ILE ALA ARG LEU SER GLY ARG SER ALA PHE PHE GLY SEQRES 6 B 323 ARG VAL GLY ASN ASP PRO PHE GLY ARG PHE MET GLN GLN SEQRES 7 B 323 THR LEU THR ASP GLU GLN VAL ASP CYS GLN HIS LEU HIS SEQRES 8 B 323 PHE ASP PRO VAL HIS ARG THR SER THR VAL VAL VAL ASP SEQRES 9 B 323 LEU ASP GLU HIS GLY GLU ARG SER PHE THR PHE MET VAL SEQRES 10 B 323 LYS PRO SER ALA ASP GLN PHE LEU GLN LEU SER ASP ILE SEQRES 11 B 323 PRO SER PHE GLN LYS GLY GLU TRP LEU HIS VAL CYS SER SEQRES 12 B 323 ILE ALA LEU ALA ASN GLN PRO SER ARG SER SER THR PHE SEQRES 13 B 323 ALA ALA ILE ALA GLN MET LYS GLU VAL GLY GLY TYR VAL SEQRES 14 B 323 SER PHE ASP PRO ASN LEU ARG GLU GLU VAL TRP SER GLU SEQRES 15 B 323 PRO GLN GLU LEU GLN ALA THR VAL MET ARG ALA VAL GLY SEQRES 16 B 323 LEU ALA ASP VAL VAL LYS PHE SER GLU GLU GLU LEU GLN SEQRES 17 B 323 PHE LEU THR GLY THR GLN SER ILE GLU GLU GLY LEU GLN SEQRES 18 B 323 ALA ILE ALA ASP PHE GLN ILE PRO LEU VAL VAL VAL THR SEQRES 19 B 323 LEU GLY ALA LYS GLY ALA LEU VAL ALA THR PRO ASN SER SEQRES 20 B 323 GLN GLN ILE VAL SER GLY LYS ALA VAL LYS PRO ILE ASP SEQRES 21 B 323 THR THR GLY ALA GLY ASP ALA PHE VAL GLY GLY LEU LEU SEQRES 22 B 323 TYR ARG LEU SER VAL ALA GLN ASP TRP HIS ASN GLN ALA SEQRES 23 B 323 THR ILE LEU ASP ALA VAL LYS TRP ALA ASN GLY CYS GLY SEQRES 24 B 323 ALA LEU ALA THR THR GLN LYS GLY ALA MET THR ALA LEU SEQRES 25 B 323 PRO ASN GLN ALA ALA LEU TYR ALA PHE LEU GLU
HET NA A 401 1
HETNAM NA SODIUM ION
FORMUL 3 NA NA 1+ FORMUL 4 HOH *83(H2 O)
HELIX 1 AA1 GLY A 45 LEU A 57 1 13 HELIX 2 AA2 ASP A 70 ASP A 82 1 13 HELIX 3 AA3 SER A 120 LEU A 125 5 6 HELIX 4 AA4 GLN A 126 ILE A 130 5 5 HELIX 5 AA5 ILE A 144 ALA A 147 5 4 HELIX 6 AA6 PRO A 150 GLY A 166 1 17 HELIX 7 AA7 ARG A 176 TRP A 180 5 5 HELIX 8 AA8 GLU A 182 GLN A 184 5 3 HELIX 9 AA9 GLU A 185 GLY A 195 1 11 HELIX 10 AB1 SER A 203 GLY A 212 1 10 HELIX 11 AB2 SER A 215 ILE A 223 1 9 HELIX 12 AB3 ALA A 224 GLN A 227 5 4 HELIX 13 AB4 GLY A 263 VAL A 278 1 16 HELIX 14 AB5 ASN A 284 ALA A 302 1 19 HELIX 15 AB6 THR A 303 GLN A 305 5 3 HELIX 16 AB7 ASN A 314 GLU A 323 1 10 HELIX 17 AB8 GLY B 45 LEU B 57 1 13 HELIX 18 AB9 ASP B 70 GLU B 83 1 14 HELIX 19 AC1 SER B 120 LEU B 125 5 6 HELIX 20 AC2 GLN B 126 ILE B 130 5 5 HELIX 21 AC3 ILE B 144 ALA B 147 5 4 HELIX 22 AC4 PRO B 150 VAL B 165 1 16 HELIX 23 AC5 ARG B 176 TRP B 180 5 5 HELIX 24 AC6 GLU B 182 GLN B 184 5 3 HELIX 25 AC7 GLU B 185 LEU B 196 1 12 HELIX 26 AC8 SER B 203 LEU B 210 1 8 HELIX 27 AC9 SER B 215 ILE B 223 1 9 HELIX 28 AD1 ALA B 224 GLN B 227 5 4 HELIX 29 AD2 ALA B 264 ALA B 279 1 16 HELIX 30 AD3 ASN B 284 THR B 304 1 21
SHEET 1 AA1 9 ASP A 86 ASP A 93 0 SHEET 2 AA1 9 SER A 61 GLY A 68 1 N VAL A 67 O ASP A 93 SHEET 3 AA1 9 VAL A 21 THR A 24 1 N VAL A 21 O ALA A 62 SHEET 4 AA1 9 TRP A 138 CYS A 142 1 O TRP A 138 N TRP A 22 SHEET 5 AA1 9 TYR A 168 ASP A 172 1 O SER A 170 N LEU A 139 SHEET 6 AA1 9 VAL A 199 PHE A 202 1 O VAL A 199 N PHE A 171 SHEET 7 AA1 9 LEU A 230 THR A 234 1 O VAL A 232 N PHE A 202 SHEET 8 AA1 9 ALA A 240 ALA A 243 -1 O ALA A 243 N VAL A 231 SHEET 9 AA1 9 GLN A 248 VAL A 251 -1 O GLN A 249 N VAL A 242 SHEET 1 AA2 8 GLU A 110 PHE A 115 0 SHEET 2 AA2 8 THR A 100 ASP A 106 -1 N ASP A 106 O GLU A 110 SHEET 3 AA2 8 VAL A 28 PRO A 33 1 N LEU A 31 O VAL A 101 SHEET 4 AA2 8 HIS A 38 GLY A 44 -1 O LEU A 40 N ILE A 32 SHEET 5 AA2 8 HIS B 38 GLY B 44 -1 O TYR B 39 N TYR A 39 SHEET 6 AA2 8 VAL B 28 PRO B 33 -1 N ASP B 30 O CYS B 42 SHEET 7 AA2 8 THR B 100 LEU B 105 1 O VAL B 101 N LEU B 31 SHEET 8 AA2 8 ARG B 111 PHE B 115 -1 O SER B 112 N ASP B 104 SHEET 1 AA3 9 ASP B 86 ASP B 93 0 SHEET 2 AA3 9 SER B 61 GLY B 68 1 N PHE B 63 O ASP B 86 SHEET 3 AA3 9 VAL B 21 LEU B 23 1 N LEU B 23 O PHE B 64 SHEET 4 AA3 9 TRP B 138 CYS B 142 1 O TRP B 138 N TRP B 22 SHEET 5 AA3 9 TYR B 168 ASP B 172 1 O SER B 170 N LEU B 139 SHEET 6 AA3 9 VAL B 199 PHE B 202 1 O LYS B 201 N PHE B 171 SHEET 7 AA3 9 LEU B 230 THR B 234 1 O VAL B 232 N PHE B 202 SHEET 8 AA3 9 ALA B 240 ALA B 243 -1 O LEU B 241 N VAL B 233 SHEET 9 AA3 9 GLN B 248 ILE B 250 -1 O GLN B 249 N VAL B 242
LINK O ASP A 260 NA NA A 401 1555 1555 2.59 LINK OD2 ASP A 260 NA NA A 401 1555 1555 2.99 LINK O THR A 262 NA NA A 401 1555 1555 3.02 LINK O ALA A 302 NA NA A 401 1555 1555 2.77 LINK O GLN A 305 NA NA A 401 1555 1555 3.15 LINK O GLY A 307 NA NA A 401 1555 1555 2.72
CISPEP 1 GLU A 83 GLN A 84 0 9.58 CISPEP 2 HIS A 108 GLY A 109 0 0.05 CISPEP 3 LYS A 118 PRO A 119 0 -4.51 CISPEP 4 GLN A 149 PRO A 150 0 3.40 CISPEP 5 LYS B 118 PRO B 119 0 -3.24 CISPEP 6 GLN B 149 PRO B 150 0 1.44
SITE 1 AC1 5 ASP A 260 THR A 262 ALA A 302 GLN A 305 SITE 2 AC1 5 GLY A 307
CRYST1 107.116 99.858 61.548 90.00 90.00 90.00 P 21 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009336 0.000000 0.000000 0.00000
SCALE2 0.000000 0.010014 0.000000 0.00000
SCALE3 0.000000 0.000000 0.016247 0.00000