5EJH - Header Asymmetric Unit

HEADER TRANSFERASE 01-NOV-15 5EJH

TITLE CRYSTAL STRUCTURE OF NAD KINASE V98S MUTANT FROM LISTERIA TITLE 2 MONOCYTOGENES

COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD KINASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATP-DEPENDENT NAD KINASE; COMPND 5 EC: 2.7.1.23; COMPND 6 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 1639; SOURCE 4 GENE: NADK1, LMO0968; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PLA15.3.3

KEYWDS GRAM-POSITIVE NAD KINASE, ALLOSTERY, CITRATE, TRANSFERASE

EXPDTA X-RAY DIFFRACTION

AUTHOR G.PONCET-MONTANGE,L.ASSAIRI,M.GELIN,S.POCHET,G.LABESSE

REVDAT 1 09-NOV-16 5EJH 0

JRNL AUTH G.PONCET-MONTANGE,L.ASSAIRI,M.GELIN,S.POCHET,G.LABESSE JRNL TITL CRYSTAL STRUCTURE OF NAD KINASE 1 FROM LISTERIA JRNL TITL 2 MONOCYTOGENES: V98S MUTANT JRNL REF TO BE PUBLISHED JRNL REFN

REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.PONCET-MONTANGE,L.ASSAIRI,M.GELIN,S.POCHET,G.LABESSE REMARK 1 TITL MOLECULAR BASIS OF NAD KINASE CATALYSIS REVEALS CITRATE IS REMARK 1 TITL 2 AN ALLOSTERIC REGULATOR. REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN

REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 18405 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1052 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.3124 - 3.9976 0.94 4189 129 0.1454 0.1727 REMARK 3 2 3.9976 - 3.1740 0.95 4267 109 0.1475 0.1775 REMARK 3 3 3.1740 - 2.7730 0.95 4277 152 0.1747 0.2139 REMARK 3 4 2.7730 - 2.5196 0.96 4268 115 0.1847 0.2291 REMARK 3 5 2.5196 - 2.3391 0.96 4267 135 0.2023 0.2952 REMARK 3 6 2.3391 - 2.2012 0.96 4312 131 0.2209 0.2851 REMARK 3 7 2.2012 - 2.0910 0.96 4220 143 0.2446 0.2939 REMARK 3 8 2.0910 - 2.0000 0.95 4253 138 0.2687 0.3332 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2198 REMARK 3 ANGLE : 0.986 2979 REMARK 3 CHIRALITY : 0.048 318 REMARK 3 PLANARITY : 0.005 376 REMARK 3 DIHEDRAL : 15.132 790 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7498 22.5050 28.7597 REMARK 3 T TENSOR REMARK 3 T11: 0.3355 T22: 0.3376 REMARK 3 T33: 0.2557 T12: 0.0779 REMARK 3 T13: 0.0495 T23: -0.0901 REMARK 3 L TENSOR REMARK 3 L11: 0.0249 L22: 0.0073 REMARK 3 L33: 0.0165 L12: 0.0038 REMARK 3 L13: -0.0199 L23: 0.0047 REMARK 3 S TENSOR REMARK 3 S11: -0.1100 S12: -0.2206 S13: -0.0823 REMARK 3 S21: 0.0554 S22: -0.0085 S23: 0.0748 REMARK 3 S31: -0.0932 S32: -0.0251 S33: -0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5812 25.8133 19.8324 REMARK 3 T TENSOR REMARK 3 T11: 0.2393 T22: 0.2705 REMARK 3 T33: 0.2667 T12: 0.0661 REMARK 3 T13: 0.0355 T23: -0.1008 REMARK 3 L TENSOR REMARK 3 L11: 0.0472 L22: 0.0127 REMARK 3 L33: 0.0214 L12: -0.0116 REMARK 3 L13: -0.0089 L23: -0.0182 REMARK 3 S TENSOR REMARK 3 S11: -0.1141 S12: -0.1014 S13: 0.1062 REMARK 3 S21: 0.0438 S22: -0.0993 S23: 0.0833 REMARK 3 S31: -0.0284 S32: -0.0947 S33: -0.0149 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.3619 26.8543 14.5569 REMARK 3 T TENSOR REMARK 3 T11: 0.3696 T22: 0.2075 REMARK 3 T33: 0.2853 T12: 0.1245 REMARK 3 T13: 0.0021 T23: -0.0504 REMARK 3 L TENSOR REMARK 3 L11: 0.0074 L22: -0.0013 REMARK 3 L33: 0.0060 L12: 0.0010 REMARK 3 L13: -0.0099 L23: -0.0041 REMARK 3 S TENSOR REMARK 3 S11: -0.0396 S12: -0.0417 S13: 0.0537 REMARK 3 S21: -0.0360 S22: -0.0691 S23: 0.0233 REMARK 3 S31: -0.0543 S32: -0.0164 S33: -0.0228 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2699 21.6987 26.5934 REMARK 3 T TENSOR REMARK 3 T11: 0.2086 T22: 0.4685 REMARK 3 T33: 0.0339 T12: 0.2784 REMARK 3 T13: 0.1181 T23: -0.2412 REMARK 3 L TENSOR REMARK 3 L11: 0.0071 L22: 0.0138 REMARK 3 L33: 0.0092 L12: 0.0100 REMARK 3 L13: -0.0122 L23: -0.0119 REMARK 3 S TENSOR REMARK 3 S11: -0.0226 S12: -0.1811 S13: 0.0305 REMARK 3 S21: -0.0138 S22: 0.0704 S23: -0.0402 REMARK 3 S31: 0.0788 S32: 0.0483 S33: 0.0450 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7152 23.8116 4.3408 REMARK 3 T TENSOR REMARK 3 T11: 0.2051 T22: 0.2180 REMARK 3 T33: 0.2430 T12: 0.0801 REMARK 3 T13: 0.0377 T23: -0.0409 REMARK 3 L TENSOR REMARK 3 L11: 0.0378 L22: 0.0285 REMARK 3 L33: 0.0620 L12: 0.0226 REMARK 3 L13: -0.0296 L23: 0.0004 REMARK 3 S TENSOR REMARK 3 S11: 0.1707 S12: 0.0644 S13: 0.1559 REMARK 3 S21: 0.0908 S22: 0.0057 S23: 0.0818 REMARK 3 S31: -0.0667 S32: -0.1093 S33: 0.0376 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 123 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9598 11.1037 -3.9973 REMARK 3 T TENSOR REMARK 3 T11: 0.1291 T22: 0.1206 REMARK 3 T33: 0.1357 T12: 0.0299 REMARK 3 T13: -0.0068 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.0597 L22: 0.0505 REMARK 3 L33: 0.0267 L12: -0.0308 REMARK 3 L13: -0.0542 L23: 0.0054 REMARK 3 S TENSOR REMARK 3 S11: 0.0479 S12: 0.0138 S13: 0.0669 REMARK 3 S21: -0.0041 S22: -0.0775 S23: 0.0629 REMARK 3 S31: -0.0447 S32: -0.0945 S33: -0.0006 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 185 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.5131 0.8170 -13.2423 REMARK 3 T TENSOR REMARK 3 T11: 0.2330 T22: 0.1574 REMARK 3 T33: 0.1270 T12: 0.0071 REMARK 3 T13: -0.0285 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 0.0398 L22: 0.0180 REMARK 3 L33: 0.0006 L12: 0.0314 REMARK 3 L13: -0.0055 L23: 0.0032 REMARK 3 S TENSOR REMARK 3 S11: 0.1355 S12: 0.0510 S13: 0.0266 REMARK 3 S21: -0.1351 S22: -0.0979 S23: 0.0617 REMARK 3 S31: 0.0588 S32: 0.0309 S33: 0.0015 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 199 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.2958 15.2182 -10.4126 REMARK 3 T TENSOR REMARK 3 T11: 0.1483 T22: 0.1798 REMARK 3 T33: 0.2278 T12: 0.0716 REMARK 3 T13: -0.0164 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 0.0323 L22: 0.0082 REMARK 3 L33: 0.0678 L12: -0.0084 REMARK 3 L13: -0.0161 L23: -0.0141 REMARK 3 S TENSOR REMARK 3 S11: 0.0749 S12: 0.1268 S13: 0.0197 REMARK 3 S21: -0.0453 S22: -0.0549 S23: 0.0991 REMARK 3 S31: -0.1491 S32: -0.1422 S33: 0.0187 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 217 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9005 13.2957 -3.5604 REMARK 3 T TENSOR REMARK 3 T11: 0.1416 T22: 0.3191 REMARK 3 T33: 0.2680 T12: 0.0424 REMARK 3 T13: -0.0180 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 0.0019 L22: 0.0591 REMARK 3 L33: 0.0047 L12: -0.0129 REMARK 3 L13: -0.0043 L23: 0.0140 REMARK 3 S TENSOR REMARK 3 S11: -0.0234 S12: 0.0991 S13: 0.1592 REMARK 3 S21: -0.0357 S22: -0.0449 S23: 0.1895 REMARK 3 S31: 0.0041 S32: -0.2141 S33: -0.0042 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 239 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5925 26.4482 14.8082 REMARK 3 T TENSOR REMARK 3 T11: 0.3592 T22: 0.1931 REMARK 3 T33: 0.2930 T12: -0.0030 REMARK 3 T13: 0.0430 T23: -0.0550 REMARK 3 L TENSOR REMARK 3 L11: 0.0060 L22: 0.0015 REMARK 3 L33: -0.0002 L12: -0.0159 REMARK 3 L13: 0.0036 L23: 0.0038 REMARK 3 S TENSOR REMARK 3 S11: 0.1606 S12: -0.0302 S13: 0.0982 REMARK 3 S21: -0.0088 S22: 0.0007 S23: 0.0179 REMARK 3 S31: -0.0175 S32: -0.0394 S33: 0.0002 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 253 THROUGH 263 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.4438 13.1913 16.9895 REMARK 3 T TENSOR REMARK 3 T11: 0.2290 T22: 0.2332 REMARK 3 T33: 0.1846 T12: -0.0304 REMARK 3 T13: -0.0012 T23: -0.0534 REMARK 3 L TENSOR REMARK 3 L11: 0.0018 L22: -0.0005 REMARK 3 L33: 0.0038 L12: 0.0015 REMARK 3 L13: -0.0037 L23: -0.0020 REMARK 3 S TENSOR REMARK 3 S11: -0.0049 S12: -0.0509 S13: 0.0531 REMARK 3 S21: 0.0674 S22: -0.0389 S23: -0.0052 REMARK 3 S31: 0.0433 S32: -0.0356 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 5EJH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215020.

REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-SEP-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18435 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.844 REMARK 200 RESOLUTION RANGE LOW (A) : 63.856 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : 0.49000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2I2A REMARK 200 REMARK 200 REMARK: NULL

REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM SODIUM BROMIDE, 150 MM TRI REMARK 280 -SODIUM CITRATE DIHYDRATE, PH 5.1-5.4, 14-16% W/V POLYETHYLENE REMARK 280 GLYCOL 400, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K

REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.37950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.94000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 59.10350 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.37950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.94000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.10350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.37950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.94000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.10350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.37950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 37.94000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.10350 REMARK 290 REMARK 290 REMARK: NULL

REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.

REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 62.75900 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 62.75900 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000

REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 448 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 536 LIES ON A SPECIAL POSITION.

REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 110 REMARK 465 ILE A 111 REMARK 465 GLY A 112 REMARK 465 LYS A 113 REMARK 465 ASP A 264 REMARK 465 LEU A 265 REMARK 465 GLU A 266 REMARK 465 HIS A 267 REMARK 465 HIS A 268 REMARK 465 HIS A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272

REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 114 CG CD CE NZ REMARK 470 GLN A 232 CG CD OE1 NE2

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 263 O HOH A 401 1.91 REMARK 500 O HOH A 525 O HOH A 527 1.94 REMARK 500 O7 CIT A 302 O HOH A 402 2.07 REMARK 500 NH2 ARG A 148 O HOH A 403 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 77 -28.76 102.58 REMARK 500 ASN A 122 -65.86 -98.80 REMARK 500 SER A 129 30.21 -94.36 REMARK 500 ASP A 141 -1.90 70.32 REMARK 500 ALA A 162 -128.51 -107.81 REMARK 500 ASN A 189 -154.39 -148.26 REMARK 500 HIS A 204 -8.98 78.32 REMARK 500 ASN A 213 -82.95 -119.28 REMARK 500 ASP A 222 -125.52 50.63 REMARK 500 ILE A 262 -60.36 -99.70 REMARK 500 REMARK 500 REMARK: NULL

REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 302

DBREF 5EJH A 1 264 UNP Q8Y8D7 NADK1_LISMO 1 264

SEQADV 5EJH SER A 98 UNP Q8Y8D7 VAL 98 ENGINEERED MUTATION SEQADV 5EJH LEU A 265 UNP Q8Y8D7 EXPRESSION TAG SEQADV 5EJH GLU A 266 UNP Q8Y8D7 EXPRESSION TAG SEQADV 5EJH HIS A 267 UNP Q8Y8D7 EXPRESSION TAG SEQADV 5EJH HIS A 268 UNP Q8Y8D7 EXPRESSION TAG SEQADV 5EJH HIS A 269 UNP Q8Y8D7 EXPRESSION TAG SEQADV 5EJH HIS A 270 UNP Q8Y8D7 EXPRESSION TAG SEQADV 5EJH HIS A 271 UNP Q8Y8D7 EXPRESSION TAG SEQADV 5EJH HIS A 272 UNP Q8Y8D7 EXPRESSION TAG

SEQRES 1 A 272 MET LYS TYR MET ILE THR SER LYS GLY ASP GLU LYS SER SEQRES 2 A 272 ASP LEU LEU ARG LEU ASN MET ILE ALA GLY PHE GLY GLU SEQRES 3 A 272 TYR ASP MET GLU TYR ASP ASP VAL GLU PRO GLU ILE VAL SEQRES 4 A 272 ILE SER ILE GLY GLY ASP GLY THR PHE LEU SER ALA PHE SEQRES 5 A 272 HIS GLN TYR GLU GLU ARG LEU ASP GLU ILE ALA PHE ILE SEQRES 6 A 272 GLY ILE HIS THR GLY HIS LEU GLY PHE TYR ALA ASP TRP SEQRES 7 A 272 ARG PRO ALA GLU ALA ASP LYS LEU VAL LYS LEU LEU ALA SEQRES 8 A 272 LYS GLY GLU TYR GLN LYS SER SER TYR PRO LEU LEU LYS SEQRES 9 A 272 THR THR VAL LYS TYR GLY ILE GLY LYS LYS GLU ALA THR SEQRES 10 A 272 TYR LEU ALA LEU ASN GLU SER THR VAL LYS SER SER GLY SEQRES 11 A 272 GLY PRO PHE VAL VAL ASP VAL VAL ILE ASN ASP ILE HIS SEQRES 12 A 272 PHE GLU ARG PHE ARG GLY ASP GLY LEU CYS MET SER THR SEQRES 13 A 272 PRO SER GLY THR THR ALA TYR ASN LYS SER LEU GLY GLY SEQRES 14 A 272 ALA LEU MET HIS PRO SER ILE GLU ALA MET GLN LEU THR SEQRES 15 A 272 GLU MET ALA SER ILE ASN ASN ARG VAL TYR ARG THR ILE SEQRES 16 A 272 GLY SER PRO LEU VAL PHE PRO LYS HIS HIS VAL VAL SER SEQRES 17 A 272 LEU GLN PRO VAL ASN ASP LYS ASP PHE GLN ILE SER VAL SEQRES 18 A 272 ASP HIS LEU SER ILE LEU HIS ARG ASP VAL GLN GLU ILE SEQRES 19 A 272 ARG TYR GLU VAL SER ALA LYS LYS ILE HIS PHE ALA ARG SEQRES 20 A 272 PHE ARG SER PHE PRO PHE TRP ARG ARG VAL HIS ASP SER SEQRES 21 A 272 PHE ILE GLU ASP LEU GLU HIS HIS HIS HIS HIS HIS

HET NAP A 301 48 HET CIT A 302 16

HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM CIT CITRIC ACID

HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE

FORMUL 2 NAP C21 H28 N7 O17 P3 FORMUL 3 CIT C6 H8 O7 FORMUL 4 HOH *144(H2 O)

HELIX 1 AA1 ASP A 10 GLY A 25 1 16 HELIX 2 AA2 GLY A 44 TYR A 55 1 12 HELIX 3 AA3 ARG A 79 ALA A 81 5 3 HELIX 4 AA4 GLU A 82 GLY A 93 1 12 HELIX 5 AA5 PRO A 157 THR A 161 5 5 HELIX 6 AA6 ALA A 162 LEU A 167 1 6 HELIX 7 AA7 PRO A 252 ILE A 262 1 11

SHEET 1 AA1 4 GLU A 30 TYR A 31 0 SHEET 2 AA1 4 LYS A 2 SER A 7 1 N TYR A 3 O GLU A 30 SHEET 3 AA1 4 ILE A 38 GLY A 43 1 O ILE A 40 N THR A 6 SHEET 4 AA1 4 ALA A 63 HIS A 68 1 O ILE A 67 N SER A 41 SHEET 1 AA2 6 ALA A 116 ALA A 120 0 SHEET 2 AA2 6 GLN A 96 LYS A 108 -1 N VAL A 107 O ALA A 116 SHEET 3 AA2 6 GLU A 233 ARG A 247 -1 O ARG A 247 N GLN A 96 SHEET 4 AA2 6 VAL A 207 PRO A 211 -1 N VAL A 207 O TYR A 236 SHEET 5 AA2 6 PHE A 133 ILE A 139 -1 N VAL A 138 O SER A 208 SHEET 6 AA2 6 ILE A 142 GLY A 149 -1 O GLU A 145 N VAL A 137 SHEET 1 AA3 6 LEU A 199 PRO A 202 0 SHEET 2 AA3 6 ALA A 178 MET A 184 -1 N MET A 179 O PHE A 201 SHEET 3 AA3 6 GLY A 151 SER A 155 -1 N SER A 155 O GLN A 180 SHEET 4 AA3 6 GLU A 123 SER A 128 -1 N SER A 124 O MET A 154 SHEET 5 AA3 6 PHE A 217 VAL A 221 -1 O SER A 220 N THR A 125 SHEET 6 AA3 6 LEU A 224 HIS A 228 -1 O HIS A 228 N PHE A 217

CISPEP 1 ALA A 76 ASP A 77 0 14.72

SITE 1 AC1 20 GLY A 44 ASP A 45 GLY A 46 HIS A 71 SITE 2 AC1 20 PHE A 74 TYR A 75 ASN A 122 GLU A 123 SITE 3 AC1 20 ASP A 150 SER A 158 THR A 161 ALA A 162 SITE 4 AC1 20 TYR A 163 SER A 166 ALA A 185 ILE A 187 SITE 5 AC1 20 ASP A 222 HIS A 223 HOH A 447 HOH A 535 SITE 1 AC2 11 TYR A 100 HIS A 173 ARG A 247 PHE A 251 SITE 2 AC2 11 PRO A 252 PHE A 253 ARG A 256 HOH A 402 SITE 3 AC2 11 HOH A 417 HOH A 442 HOH A 518

CRYST1 62.759 75.880 118.207 90.00 90.00 90.00 I 2 2 2 8

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 0.015934 0.000000 0.000000 0.00000

SCALE2 0.000000 0.013179 0.000000 0.00000

SCALE3 0.000000 0.000000 0.008460 0.00000