10 20 30 40 50 60 70 80 5CRJ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSCRIPTION/DNA 23-JUL-15 5CRJ
TITLE CRYSTAL STRUCTURE OF THE MTERF1 F322A SUBSTITUTION BOUND TO THE TITLE 2 TERMINATION SEQUENCE.
COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION TERMINATION FACTOR 1, MITOCHONDRIAL; COMPND 3 CHAIN: O; COMPND 4 SYNONYM: CDNA FLJ51270,HIGHLY SIMILAR TO TRANSCRIPTION TERMINATION COMPND 5 FACTOR,MITOCHONDRIAL; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'- COMPND 10 D(*AP*TP*TP*AP*CP*CP*GP*GP*GP*CP*TP*CP*TP*GP*CP*CP*AP*TP*CP*TP*TP*A)- COMPND 11 3'); COMPND 12 CHAIN: D; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: DNA (5'- COMPND 16 D(*TP*AP*AP*GP*AP*TP*GP*GP*CP*AP*GP*AP*GP*CP*CP*CP*GP*GP*TP*AP*AP*T)- COMPND 17 3'); COMPND 18 CHAIN: E; COMPND 19 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MTERF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ARCTIC EXPRESS DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTEV-HMBP3; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_TAXID: 9606
KEYWDS PROTEIN-DNA, TRANSCRIPTION FACTOR, MITOCHONDRIA, TERMINATION, KEYWDS 2 TRANSCRIPTION-DNA COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR J.BYRNES,K.HAUSER,L.NORONA,E.MEJIA,C.SIMMERLING,M.GARCIA-DIAZ
REVDAT 2 15-JUN-16 5CRJ 1 JRNL REVDAT 1 25-NOV-15 5CRJ 0
JRNL AUTH J.BYRNES,K.HAUSER,L.NORONA,E.MEJIA,C.SIMMERLING, JRNL AUTH 2 M.GARCIA-DIAZ JRNL TITL BASE FLIPPING BY MTERF1 CAN ACCOMMODATE MULTIPLE JRNL TITL 2 CONFORMATIONS AND OCCURS IN A STEPWISE FASHION. JRNL REF J.MOL.BIOL. V. 428 2542 2016 JRNL REFN ESSN 1089-8638 JRNL PMID 26523681 JRNL DOI 10.1016/J.JMB.2015.10.021
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.YAKUBOVSKAYA,E.MEJIA,J.BYRNES,E.HAMBARDJIEVA,M.GARCIA-DIAZ REMARK 1 TITL HELIX UNWINDING AND BASE FLIPPING ENABLE HUMAN MTERF1 TO REMARK 1 TITL 2 TERMINATE MITOCHONDRIAL TRANSCRIPTION. REMARK 1 REF CELL V. 141 982 2010 REMARK 1 REFN ISSN 1097-4172 REMARK 1 PMID 20550934 REMARK 1 DOI 10.1016/J.CELL.2010.05.018
REMARK 2 REMARK 2 RESOLUTION. 2.59 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0071 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 80.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 19632 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1001 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.59 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1449 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3840 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.3350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2597 REMARK 3 NUCLEIC ACID ATOMS : 896 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 33 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.437 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.308 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.272 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.458 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3639 ; 0.011 ; 0.017 REMARK 3 BOND LENGTHS OTHERS (A): 3145 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5095 ; 1.593 ; 1.738 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7267 ; 1.194 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 323 ; 6.469 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 116 ;36.578 ;24.138 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 522 ;18.524 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;17.409 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 547 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3439 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 806 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1295 ; 5.494 ; 7.013 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1294 ; 5.482 ; 7.013 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1617 ; 8.167 ;10.517 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY
REMARK 4 REMARK 4 5CRJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000212039.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20665 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.589 REMARK 200 RESOLUTION RANGE LOW (A) : 161.431 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 29.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.82500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3MVA REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM ACETATE, 0.1M TRIS HCL PH REMARK 280 8.0, 15.5% PEG4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.71550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.71550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.62250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.06800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.62250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.06800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 80.71550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.62250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 45.06800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 80.71550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.62250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 45.06800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: O, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU O 73 CG CD OE1 OE2 REMARK 470 ASP O 74 CG OD1 OD2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB SER O 355 O HOH E 103 1.84 REMARK 500 OP2 DG E 7 O HOH E 101 2.04 REMARK 500 O5' DG D 7 O HOH D 101 2.05 REMARK 500 OG1 THR O 102 OE2 GLU O 104 2.12 REMARK 500 ND2 ASN O 178 O HOH O 401 2.14 REMARK 500 O LEU O 174 O HOH O 401 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OP2 DA D 22 O5' DT E 1 4565 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG O 202 CG - CD - NE ANGL. DEV. = -18.3 DEGREES REMARK 500 DT E 1 C5' - C4' - O4' ANGL. DEV. = 6.8 DEGREES REMARK 500 DG E 8 O5' - P - OP2 ANGL. DEV. = -7.4 DEGREES REMARK 500 DA E 10 O5' - P - OP1 ANGL. DEV. = -6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU O 75 -71.97 -40.56 REMARK 500 HIS O 98 40.51 -99.23 REMARK 500 SER O 117 151.10 -45.93 REMARK 500 ILE O 149 -56.52 -134.78 REMARK 500 ASN O 241 79.49 -117.87 REMARK 500 SER O 261 -73.34 -48.90 REMARK 500 ASN O 264 -80.77 -21.65 REMARK 500 TYR O 317 55.35 -162.92 REMARK 500 LEU O 323 141.43 -35.42 REMARK 500 SER O 354 154.87 -47.95 REMARK 500 LEU O 373 -36.67 65.37 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MVA RELATED DB: PDB REMARK 900 RELATED ID: 3MVB RELATED DB: PDB REMARK 900 RELATED ID: 5CKY RELATED DB: PDB REMARK 900 RELATED ID: 5CO0 RELATED DB: PDB REMARK 900 RELATED ID: 5CRK RELATED DB: PDB
DBREF 5CRJ O 73 396 UNP B4DPR9 B4DPR9_HUMAN 53 376 DBREF 5CRJ D 1 22 PDB 5CRJ 5CRJ 1 22 DBREF 5CRJ E 1 22 PDB 5CRJ 5CRJ 1 22
SEQADV 5CRJ ALA O 322 UNP B4DPR9 PHE 302 ENGINEERED MUTATION
SEQRES 1 O 324 GLU ASP LEU LEU LYS ASN LEU LEU THR MET GLY VAL ASP SEQRES 2 O 324 ILE ASP MET ALA ARG LYS ARG GLN PRO GLY VAL PHE HIS SEQRES 3 O 324 ARG MET ILE THR ASN GLU GLN ASP LEU LYS MET PHE LEU SEQRES 4 O 324 LEU SER LYS GLY ALA SER LYS GLU VAL ILE ALA SER ILE SEQRES 5 O 324 ILE SER ARG TYR PRO ARG ALA ILE THR ARG THR PRO GLU SEQRES 6 O 324 ASN LEU SER LYS ARG TRP ASP LEU TRP ARG LYS ILE VAL SEQRES 7 O 324 THR SER ASP LEU GLU ILE VAL ASN ILE LEU GLU ARG SER SEQRES 8 O 324 PRO GLU SER PHE PHE ARG SER ASN ASN ASN LEU ASN LEU SEQRES 9 O 324 GLU ASN ASN ILE LYS PHE LEU TYR SER VAL GLY LEU THR SEQRES 10 O 324 ARG LYS CYS LEU CYS ARG LEU LEU THR ASN ALA PRO ARG SEQRES 11 O 324 THR PHE SER ASN SER LEU ASP LEU ASN LYS GLN MET VAL SEQRES 12 O 324 GLU PHE LEU GLN ALA ALA GLY LEU SER LEU GLY HIS ASN SEQRES 13 O 324 ASP PRO ALA ASP PHE VAL ARG LYS ILE ILE PHE LYS ASN SEQRES 14 O 324 PRO PHE ILE LEU ILE GLN SER THR LYS ARG VAL LYS ALA SEQRES 15 O 324 ASN ILE GLU PHE LEU ARG SER THR PHE ASN LEU ASN SER SEQRES 16 O 324 GLU GLU LEU LEU VAL LEU ILE CYS GLY PRO GLY ALA GLU SEQRES 17 O 324 ILE LEU ASP LEU SER ASN ASP TYR ALA ARG ARG SER TYR SEQRES 18 O 324 ALA ASN ILE LYS GLU LYS LEU PHE SER LEU GLY CYS THR SEQRES 19 O 324 GLU GLU GLU VAL GLN LYS PHE VAL LEU SER TYR PRO ASP SEQRES 20 O 324 VAL ILE ALA LEU ALA GLU LYS LYS PHE ASN ASP LYS ILE SEQRES 21 O 324 ASP CYS LEU MET GLU GLU ASN ILE SER ILE SER GLN ILE SEQRES 22 O 324 ILE GLU ASN PRO ARG VAL LEU ASP SER SER ILE SER THR SEQRES 23 O 324 LEU LYS SER ARG ILE LYS GLU LEU VAL ASN ALA GLY CYS SEQRES 24 O 324 ASN LEU SER THR LEU ASN ILE THR LEU LEU SER TRP SER SEQRES 25 O 324 LYS LYS ARG TYR GLU ALA LYS LEU LYS LYS LEU SER SEQRES 1 D 22 DA DT DT DA DC DC DG DG DG DC DT DC DT SEQRES 2 D 22 DG DC DC DA DT DC DT DT DA SEQRES 1 E 22 DT DA DA DG DA DT DG DG DC DA DG DA DG SEQRES 2 E 22 DC DC DC DG DG DT DA DA DT
FORMUL 4 HOH *33(H2 O)
HELIX 1 AA1 ASP O 74 GLY O 83 1 10 HELIX 2 AA2 ASP O 85 GLN O 93 1 9 HELIX 3 AA3 GLN O 93 HIS O 98 1 6 HELIX 4 AA4 ASN O 103 LYS O 114 1 12 HELIX 5 AA5 SER O 117 TYR O 128 1 12 HELIX 6 AA6 PRO O 129 ARG O 134 5 6 HELIX 7 AA7 THR O 135 LYS O 148 1 14 HELIX 8 AA8 SER O 152 SER O 163 1 12 HELIX 9 AA9 SER O 163 ARG O 169 1 7 HELIX 10 AB1 ASN O 172 VAL O 186 1 15 HELIX 11 AB2 THR O 189 ALA O 200 1 12 HELIX 12 AB3 PRO O 201 ASN O 206 1 6 HELIX 13 AB4 SER O 207 LEU O 225 1 19 HELIX 14 AB5 ASP O 229 ASN O 241 1 13 HELIX 15 AB6 PHE O 243 GLN O 247 5 5 HELIX 16 AB7 SER O 248 PHE O 263 1 16 HELIX 17 AB8 ASN O 266 GLY O 276 1 11 HELIX 18 AB9 GLY O 278 LEU O 284 5 7 HELIX 19 AC1 ASP O 287 SER O 302 1 16 HELIX 20 AC2 THR O 306 SER O 316 1 11 HELIX 21 AC3 TYR O 317 ALA O 322 5 6 HELIX 22 AC4 ALA O 324 GLU O 337 1 14 HELIX 23 AC5 SER O 341 GLU O 347 1 7 HELIX 24 AC6 ASN O 348 ASP O 353 5 6 HELIX 25 AC7 SER O 355 ASN O 368 1 14 HELIX 26 AC8 ASN O 377 TRP O 383 5 7 HELIX 27 AC9 SER O 384 LEU O 395 1 12
CISPEP 1 ASN O 264 LEU O 265 0 -9.99
CRYST1 89.245 90.136 161.431 90.00 90.00 90.00 C 2 2 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011205 0.000000 0.000000 0.00000
SCALE2 0.000000 0.011094 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006195 0.00000