10 20 30 40 50 60 70 80 5CO0 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSCRIPTION/DNA 18-JUL-15 5CO0
TITLE CRYSTAL STRUCTURE OF THE MTERF1 Y288A SUBSTITUTION BOUND TO THE TITLE 2 TERMINATION SEQUENCE.
COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION TERMINATION FACTOR 1, MITOCHONDRIAL; COMPND 3 CHAIN: O; COMPND 4 SYNONYM: CDNA FLJ51270,HIGHLY SIMILAR TO TRANSCRIPTION TERMINATION COMPND 5 FACTOR,MITOCHONDRIAL; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'- COMPND 10 D(*AP*TP*TP*AP*CP*CP*GP*GP*GP*CP*TP*CP*TP*GP*CP*CP*AP*TP*CP*TP*TP*A)- COMPND 11 3'); COMPND 12 CHAIN: D; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: DNA (5'- COMPND 16 D(*TP*AP*AP*GP*AP*TP*GP*GP*CP*AP*GP*AP*GP*CP*CP*CP*GP*GP*TP*AP*AP*T)- COMPND 17 3'); COMPND 18 CHAIN: E; COMPND 19 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MTERF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ARCTIC EXPRESS DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTEV-HMBP3; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_TAXID: 9606
KEYWDS PROTEIN-DNA, TRANSCRIPTION FACTOR, MITOCHONDRIA, TERMINATION, KEYWDS 2 TRANSCRIPTION-DNA COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR J.BYRNES,K.HAUSER,L.NORONA,E.MEJIA,C.SIMMERLING,M.GARCIA-DIAZ
REVDAT 2 15-JUN-16 5CO0 1 JRNL REVDAT 1 25-NOV-15 5CO0 0
JRNL AUTH J.BYRNES,K.HAUSER,L.NORONA,E.MEJIA,C.SIMMERLING, JRNL AUTH 2 M.GARCIA-DIAZ JRNL TITL BASE FLIPPING BY MTERF1 CAN ACCOMMODATE MULTIPLE JRNL TITL 2 CONFORMATIONS AND OCCURS IN A STEPWISE FASHION. JRNL REF J.MOL.BIOL. V. 428 2542 2016 JRNL REFN ESSN 1089-8638 JRNL PMID 26523681 JRNL DOI 10.1016/J.JMB.2015.10.021
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.YAKUBOVSKAYA,E.MEJIA,J.BYRNES,E.HAMBARDJIEVA,M.GARCIA-DIAZ REMARK 1 TITL HELIX UNWINDING AND BASE FLIPPING ENABLE HUMAN MTERF1 TO REMARK 1 TITL 2 TERMINATE MITOCHONDRIAL TRANSCRIPTION. REMARK 1 REF CELL V. 141 982 2010 REMARK 1 REFN ISSN 1097-4172 REMARK 1 PMID 20550934 REMARK 1 DOI 10.1016/J.CELL.2010.05.018
REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 80.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 17909 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 972 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1312 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3580 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.4860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2589 REMARK 3 NUCLEIC ACID ATOMS : 896 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 24 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05000 REMARK 3 B22 (A**2) : 0.19000 REMARK 3 B33 (A**2) : -0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.530 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.315 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.235 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.368 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3630 ; 0.012 ; 0.017 REMARK 3 BOND LENGTHS OTHERS (A): 3142 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5083 ; 1.652 ; 1.737 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7257 ; 1.010 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 323 ; 6.186 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;35.579 ;24.087 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 520 ;18.741 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;23.135 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 547 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3431 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 804 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY
REMARK 4 REMARK 4 5CO0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211810.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X9A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.29 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21454 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.540 REMARK 200 RESOLUTION RANGE LOW (A) : 80.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 26.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.71200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3MVA REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM ACETATE, 01.M TRIS HCL PH REMARK 280 8.0, 15.5% PEG4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.25700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.25700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.76850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.22000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.76850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.22000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 80.25700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 43.76850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 45.22000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 80.25700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 43.76850 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 45.22000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: O, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU O 73 CG CD OE1 OE2 REMARK 470 ASP O 74 CG OD1 OD2 REMARK 470 GLU O 280 CG CD OE1 OE2 REMARK 470 PHE O 322 CE1 CE2 CZ
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG O 162 O HOH O 401 1.94 REMARK 500 NZ LYS O 327 OP1 DG E 13 2.08 REMARK 500 OG SER O 285 O HOH O 402 2.14 REMARK 500 O2 DC D 12 O HOH D 101 2.17 REMARK 500 ND2 ASN O 266 OE1 GLU O 269 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC D 12 O3' DT D 13 P -0.086 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP O 144 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG O 162 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG O 169 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG O 202 CG - CD - NE ANGL. DEV. = -18.2 DEGREES REMARK 500 DT D 13 O5' - P - OP1 ANGL. DEV. = 11.3 DEGREES REMARK 500 DT D 13 O5' - P - OP2 ANGL. DEV. = -10.7 DEGREES REMARK 500 DT E 6 O5' - P - OP1 ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE O 149 -54.68 -127.78 REMARK 500 ALA O 200 57.05 -142.54 REMARK 500 SER O 261 -72.59 -56.33 REMARK 500 PHE O 263 -169.59 -117.15 REMARK 500 ASN O 264 -84.27 -29.01 REMARK 500 LEU O 265 74.66 -151.59 REMARK 500 ASN O 266 146.73 -28.26 REMARK 500 TYR O 317 64.12 -171.88 REMARK 500 ASN O 348 56.15 -142.12 REMARK 500 ALA O 369 -167.37 -73.87 REMARK 500 LEU O 373 -34.06 69.10 REMARK 500 SER O 384 156.18 -46.45 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CKY RELATED DB: PDB REMARK 900 RELATED ID: 3MVA RELATED DB: PDB REMARK 900 RELATED ID: 3MVB RELATED DB: PDB
DBREF 5CO0 O 73 396 UNP B4DPR9 B4DPR9_HUMAN 53 376 DBREF 5CO0 D 1 22 PDB 5CO0 5CO0 1 22 DBREF 5CO0 E 1 22 PDB 5CO0 5CO0 1 22
SEQADV 5CO0 ALA O 288 UNP B4DPR9 TYR 268 ENGINEERED MUTATION
SEQRES 1 O 324 GLU ASP LEU LEU LYS ASN LEU LEU THR MET GLY VAL ASP SEQRES 2 O 324 ILE ASP MET ALA ARG LYS ARG GLN PRO GLY VAL PHE HIS SEQRES 3 O 324 ARG MET ILE THR ASN GLU GLN ASP LEU LYS MET PHE LEU SEQRES 4 O 324 LEU SER LYS GLY ALA SER LYS GLU VAL ILE ALA SER ILE SEQRES 5 O 324 ILE SER ARG TYR PRO ARG ALA ILE THR ARG THR PRO GLU SEQRES 6 O 324 ASN LEU SER LYS ARG TRP ASP LEU TRP ARG LYS ILE VAL SEQRES 7 O 324 THR SER ASP LEU GLU ILE VAL ASN ILE LEU GLU ARG SER SEQRES 8 O 324 PRO GLU SER PHE PHE ARG SER ASN ASN ASN LEU ASN LEU SEQRES 9 O 324 GLU ASN ASN ILE LYS PHE LEU TYR SER VAL GLY LEU THR SEQRES 10 O 324 ARG LYS CYS LEU CYS ARG LEU LEU THR ASN ALA PRO ARG SEQRES 11 O 324 THR PHE SER ASN SER LEU ASP LEU ASN LYS GLN MET VAL SEQRES 12 O 324 GLU PHE LEU GLN ALA ALA GLY LEU SER LEU GLY HIS ASN SEQRES 13 O 324 ASP PRO ALA ASP PHE VAL ARG LYS ILE ILE PHE LYS ASN SEQRES 14 O 324 PRO PHE ILE LEU ILE GLN SER THR LYS ARG VAL LYS ALA SEQRES 15 O 324 ASN ILE GLU PHE LEU ARG SER THR PHE ASN LEU ASN SER SEQRES 16 O 324 GLU GLU LEU LEU VAL LEU ILE CYS GLY PRO GLY ALA GLU SEQRES 17 O 324 ILE LEU ASP LEU SER ASN ASP ALA ALA ARG ARG SER TYR SEQRES 18 O 324 ALA ASN ILE LYS GLU LYS LEU PHE SER LEU GLY CYS THR SEQRES 19 O 324 GLU GLU GLU VAL GLN LYS PHE VAL LEU SER TYR PRO ASP SEQRES 20 O 324 VAL ILE PHE LEU ALA GLU LYS LYS PHE ASN ASP LYS ILE SEQRES 21 O 324 ASP CYS LEU MET GLU GLU ASN ILE SER ILE SER GLN ILE SEQRES 22 O 324 ILE GLU ASN PRO ARG VAL LEU ASP SER SER ILE SER THR SEQRES 23 O 324 LEU LYS SER ARG ILE LYS GLU LEU VAL ASN ALA GLY CYS SEQRES 24 O 324 ASN LEU SER THR LEU ASN ILE THR LEU LEU SER TRP SER SEQRES 25 O 324 LYS LYS ARG TYR GLU ALA LYS LEU LYS LYS LEU SER SEQRES 1 D 22 DA DT DT DA DC DC DG DG DG DC DT DC DT SEQRES 2 D 22 DG DC DC DA DT DC DT DT DA SEQRES 1 E 22 DT DA DA DG DA DT DG DG DC DA DG DA DG SEQRES 2 E 22 DC DC DC DG DG DT DA DA DT
HET K E 101 1
HETNAM K POTASSIUM ION
FORMUL 4 K K 1+ FORMUL 5 HOH *24(H2 O)
HELIX 1 AA1 ASP O 74 GLY O 83 1 10 HELIX 2 AA2 ASP O 85 GLN O 93 1 9 HELIX 3 AA3 PRO O 94 ARG O 99 5 6 HELIX 4 AA4 ASN O 103 GLY O 115 1 13 HELIX 5 AA5 SER O 117 TYR O 128 1 12 HELIX 6 AA6 PRO O 129 ARG O 134 5 6 HELIX 7 AA7 THR O 135 ARG O 147 1 13 HELIX 8 AA8 SER O 152 SER O 163 1 12 HELIX 9 AA9 SER O 163 ARG O 169 1 7 HELIX 10 AB1 ASN O 172 VAL O 186 1 15 HELIX 11 AB2 THR O 189 ALA O 200 1 12 HELIX 12 AB3 PRO O 201 PHE O 204 5 4 HELIX 13 AB4 SER O 207 SER O 224 1 18 HELIX 14 AB5 ASP O 229 ASN O 241 1 13 HELIX 15 AB6 PHE O 243 GLN O 247 5 5 HELIX 16 AB7 SER O 248 PHE O 263 1 16 HELIX 17 AB8 ASN O 266 GLY O 276 1 11 HELIX 18 AB9 GLY O 278 LEU O 284 5 7 HELIX 19 AC1 ASP O 287 SER O 302 1 16 HELIX 20 AC2 THR O 306 SER O 316 1 11 HELIX 21 AC3 TYR O 317 LEU O 323 5 7 HELIX 22 AC4 ALA O 324 GLU O 338 1 15 HELIX 23 AC5 SER O 341 GLU O 347 1 7 HELIX 24 AC6 ASN O 348 SER O 354 5 7 HELIX 25 AC7 SER O 355 ALA O 369 1 15 HELIX 26 AC8 ASN O 377 TRP O 383 5 7 HELIX 27 AC9 SER O 384 LEU O 395 1 12
CISPEP 1 ASN O 264 LEU O 265 0 -1.44
CRYST1 87.537 90.440 160.514 90.00 90.00 90.00 C 2 2 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011424 0.000000 0.000000 0.00000
SCALE2 0.000000 0.011057 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006230 0.00000