10 20 30 40 50 60 70 80 4ZX2 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE/HYDROLASE INHIBITOR 20-MAY-15 4ZX2
TITLE CO-CRYSTAL STRUCTURES OF PP5 IN COMPLEX WITH 5-METHYL-7- TITLE 2 OXABICYCLO[2.2.1]HEPTANE-2,3-DICARBOXYLIC ACID
COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN PHOSPHATASE 5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 169-499; COMPND 5 SYNONYM: PP5,PROTEIN PHOSPHATASE T,PPT; COMPND 6 EC: 3.1.3.16; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPP5C, PPP5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMAL2CE
KEYWDS PROTEIN PHOSPHATASE 5, HYDROLASE-HYDROLASE INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR D.CHATTOPADHYAY,M.R.SWINGLE,E.A.SALTER,A.WIERZBICKI,R.E.HONKANEN
REVDAT 2 08-FEB-17 4ZX2 1 JRNL REVDAT 1 27-APR-16 4ZX2 0
JRNL AUTH D.CHATTOPADHYAY,M.R.SWINGLE,E.A.SALTER,E.WOOD,B.D'ARCY, JRNL AUTH 2 C.ZIVANOV,K.ABNEY,A.MUSIYENKO,S.F.RUSIN,A.KETTENBACH,L.YET, JRNL AUTH 3 C.E.SCHROEDER,J.E.GOLDEN,W.H.DUNHAM,A.C.GINGRAS,S.BANERJEE, JRNL AUTH 4 D.FORBES,A.WIERZBICKI,R.E.HONKANEN JRNL TITL CRYSTAL STRUCTURES AND MUTAGENESIS OF PPP-FAMILY SER/THR JRNL TITL 2 PROTEIN PHOSPHATASES ELUCIDATE THE SELECTIVITY OF JRNL TITL 3 CANTHARIDIN AND NOVEL NORCANTHARIDIN-BASED INHIBITORS OF JRNL TITL 4 PP5C. JRNL REF BIOCHEM. PHARMACOL. V. 109 14 2016 JRNL REFN ISSN 1873-2968 JRNL PMID 27002182 JRNL DOI 10.1016/J.BCP.2016.03.011
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.R.SWINGLE,R.E.HONKANEN,E.M.CISZAK REMARK 1 TITL STRUCTURAL BASIS FOR THE CATALYTIC ACTIVITY OF HUMAN REMARK 1 TITL 2 SERINE/THREONINE PROTEIN PHOSPHATASE-5. REMARK 1 REF J.BIOL.CHEM. V. 279 33992 2004 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 15155720 REMARK 1 DOI 10.1074/JBC.M402855200
REMARK 2 REMARK 2 RESOLUTION. 1.23 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 95453 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4984 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.23 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6121 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 333 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2600 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 344 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.21000 REMARK 3 B22 (A**2) : -0.43000 REMARK 3 B33 (A**2) : 0.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.039 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.040 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.023 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.518 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2816 ; 0.006 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3842 ; 1.253 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 360 ; 6.056 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;36.463 ;24.963 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 499 ;11.257 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;13.128 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 417 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2165 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT
REMARK 4 REMARK 4 4ZX2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000210050.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 200.0 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 107757 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.190 REMARK 200 RESOLUTION RANGE LOW (A) : 94.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.59400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 1S95 REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% MPD, 6% PEG, 10 MM TRIS, PH 8.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.30000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.41350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.41550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.41350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.30000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.41550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 492 REMARK 465 LEU A 493 REMARK 465 LEU A 494 REMARK 465 GLN A 495 REMARK 465 LEU A 496 REMARK 465 GLY A 497 REMARK 465 MET A 498 REMARK 465 MET A 499
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 173 -96.49 -119.84 REMARK 500 ASN A 269 58.16 -92.35 REMARK 500 ASP A 274 158.60 72.99 REMARK 500 ARG A 275 -64.95 76.57 REMARK 500 TYR A 323 -112.83 -128.34 REMARK 500 LYS A 347 -31.34 -130.61 REMARK 500 SER A 403 -155.33 63.83 REMARK 500 SER A 426 -129.34 -133.17 REMARK 500 HIS A 427 -5.74 76.02 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 242 OD2 REMARK 620 2 HIS A 244 NE2 102.8 REMARK 620 3 ASP A 271 OD2 92.8 101.7 REMARK 620 4 4TE A 503 O14 170.3 84.3 92.4 REMARK 620 5 4TE A 503 O09 91.7 165.5 78.0 81.3 REMARK 620 6 4TE A 503 O10 90.7 94.1 162.7 82.0 84.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 271 OD2 REMARK 620 2 ASN A 303 OD1 93.4 REMARK 620 3 HIS A 352 NE2 85.6 95.4 REMARK 620 4 HIS A 427 ND1 169.5 97.0 92.2 REMARK 620 5 4TE A 503 O09 79.7 139.9 122.9 93.0 REMARK 620 N 1 2 3 4
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4TE A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MRD A 505
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1S95 RELATED DB: PDB REMARK 900 SAME PROTEIN WITHOUT THE INHIBITOR REMARK 900 RELATED ID: 4ZVZ RELATED DB: PDB
DBREF 4ZX2 A 169 499 UNP P53041 PPP5_HUMAN 169 499
SEQADV 4ZX2 GLY A 167 UNP P53041 EXPRESSION TAG SEQADV 4ZX2 ALA A 168 UNP P53041 EXPRESSION TAG
SEQRES 1 A 333 GLY ALA SER MET THR ILE GLU ASP GLU TYR SER GLY PRO SEQRES 2 A 333 LYS LEU GLU ASP GLY LYS VAL THR ILE SER PHE MET LYS SEQRES 3 A 333 GLU LEU MET GLN TRP TYR LYS ASP GLN LYS LYS LEU HIS SEQRES 4 A 333 ARG LYS CYS ALA TYR GLN ILE LEU VAL GLN VAL LYS GLU SEQRES 5 A 333 VAL LEU SER LYS LEU SER THR LEU VAL GLU THR THR LEU SEQRES 6 A 333 LYS GLU THR GLU LYS ILE THR VAL CYS GLY ASP THR HIS SEQRES 7 A 333 GLY GLN PHE TYR ASP LEU LEU ASN ILE PHE GLU LEU ASN SEQRES 8 A 333 GLY LEU PRO SER GLU THR ASN PRO TYR ILE PHE ASN GLY SEQRES 9 A 333 ASP PHE VAL ASP ARG GLY SER PHE SER VAL GLU VAL ILE SEQRES 10 A 333 LEU THR LEU PHE GLY PHE LYS LEU LEU TYR PRO ASP HIS SEQRES 11 A 333 PHE HIS LEU LEU ARG GLY ASN HIS GLU THR ASP ASN MET SEQRES 12 A 333 ASN GLN ILE TYR GLY PHE GLU GLY GLU VAL LYS ALA LYS SEQRES 13 A 333 TYR THR ALA GLN MET TYR GLU LEU PHE SER GLU VAL PHE SEQRES 14 A 333 GLU TRP LEU PRO LEU ALA GLN CYS ILE ASN GLY LYS VAL SEQRES 15 A 333 LEU ILE MET HIS GLY GLY LEU PHE SER GLU ASP GLY VAL SEQRES 16 A 333 THR LEU ASP ASP ILE ARG LYS ILE GLU ARG ASN ARG GLN SEQRES 17 A 333 PRO PRO ASP SER GLY PRO MET CYS ASP LEU LEU TRP SER SEQRES 18 A 333 ASP PRO GLN PRO GLN ASN GLY ARG SER ILE SER LYS ARG SEQRES 19 A 333 GLY VAL SER CYS GLN PHE GLY PRO ASP VAL THR LYS ALA SEQRES 20 A 333 PHE LEU GLU GLU ASN ASN LEU ASP TYR ILE ILE ARG SER SEQRES 21 A 333 HIS GLU VAL LYS ALA GLU GLY TYR GLU VAL ALA HIS GLY SEQRES 22 A 333 GLY ARG CYS VAL THR VAL PHE SER ALA PRO ASN TYR CYS SEQRES 23 A 333 ASP GLN MET GLY ASN LYS ALA SER TYR ILE HIS LEU GLN SEQRES 24 A 333 GLY SER ASP LEU ARG PRO GLN PHE HIS GLN PHE THR ALA SEQRES 25 A 333 VAL PRO HIS PRO ASN VAL LYS PRO MET ALA TYR ALA ASN SEQRES 26 A 333 THR LEU LEU GLN LEU GLY MET MET
HET MN A 501 1 HET MN A 502 1 HET 4TE A 503 14 HET MPD A 504 8 HET MRD A 505 8
HETNAM MN MANGANESE (II) ION HETNAM 4TE (1S,2R,3S,4R,5S)-5-METHYL-7-OXABICYCLO[2.2.1]HEPTANE-2, HETNAM 2 4TE 3-DICARBOXYLIC ACID HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL
FORMUL 2 MN 2(MN 2+) FORMUL 4 4TE C9 H12 O5 FORMUL 5 MPD C6 H14 O2 FORMUL 6 MRD C6 H14 O2 FORMUL 7 HOH *344(H2 O)
HELIX 1 AA1 GLY A 167 THR A 171 5 5 HELIX 2 AA2 THR A 187 ASP A 200 1 14 HELIX 3 AA3 HIS A 205 LYS A 222 1 18 HELIX 4 AA4 GLN A 246 GLY A 258 1 13 HELIX 5 AA5 PHE A 278 TYR A 293 1 16 HELIX 6 AA6 THR A 306 GLY A 314 1 9 HELIX 7 AA7 GLY A 314 TYR A 323 1 10 HELIX 8 AA8 THR A 324 GLU A 336 1 13 HELIX 9 AA9 THR A 362 LYS A 368 1 7 HELIX 10 AB1 GLY A 379 SER A 387 1 9 HELIX 11 AB2 GLY A 407 ASN A 418 1 12 HELIX 12 AB3 HIS A 438 GLY A 440 5 3 HELIX 13 AB4 ASN A 450 GLN A 454 5 5
SHEET 1 AA1 6 LEU A 226 THR A 229 0 SHEET 2 AA1 6 ALA A 341 ILE A 344 1 O CYS A 343 N VAL A 227 SHEET 3 AA1 6 VAL A 348 ILE A 350 -1 O ILE A 350 N GLN A 342 SHEET 4 AA1 6 TYR A 422 ARG A 425 1 O ILE A 424 N LEU A 349 SHEET 5 AA1 6 CYS A 442 VAL A 445 1 O VAL A 443 N ARG A 425 SHEET 6 AA1 6 TYR A 434 ALA A 437 -1 N GLU A 435 O THR A 444 SHEET 1 AA2 5 PHE A 297 LEU A 300 0 SHEET 2 AA2 5 TYR A 266 ASN A 269 1 N TYR A 266 O HIS A 298 SHEET 3 AA2 5 LYS A 236 CYS A 240 1 N CYS A 240 O ILE A 267 SHEET 4 AA2 5 ALA A 459 GLN A 465 -1 O ILE A 462 N VAL A 239 SHEET 5 AA2 5 ASP A 468 PHE A 476 -1 O GLN A 472 N HIS A 463 SHEET 1 AA3 3 ASP A 388 PRO A 389 0 SHEET 2 AA3 3 CYS A 404 PHE A 406 1 O PHE A 406 N ASP A 388 SHEET 3 AA3 3 ARG A 395 ILE A 397 -1 N SER A 396 O GLN A 405
LINK OD2 ASP A 242 MN MN A 502 1555 1555 2.10 LINK NE2 HIS A 244 MN MN A 502 1555 1555 2.17 LINK OD2 ASP A 271 MN MN A 501 1555 1555 2.27 LINK OD2 ASP A 271 MN MN A 502 1555 1555 2.23 LINK OD1 ASN A 303 MN MN A 501 1555 1555 2.08 LINK NE2 HIS A 352 MN MN A 501 1555 1555 2.16 LINK ND1 HIS A 427 MN MN A 501 1555 1555 2.23 LINK MN MN A 501 O09 4TE A 503 1555 1555 2.06 LINK MN MN A 502 O14 4TE A 503 1555 1555 2.19 LINK MN MN A 502 O09 4TE A 503 1555 1555 2.18 LINK MN MN A 502 O10 4TE A 503 1555 1555 2.32
SITE 1 AC1 6 ASP A 271 ASN A 303 HIS A 352 HIS A 427 SITE 2 AC1 6 MN A 502 4TE A 503 SITE 1 AC2 5 ASP A 242 HIS A 244 ASP A 271 MN A 501 SITE 2 AC2 5 4TE A 503 SITE 1 AC3 12 ASP A 242 HIS A 244 ASP A 271 ARG A 275 SITE 2 AC3 12 HIS A 304 ARG A 400 HIS A 427 VAL A 429 SITE 3 AC3 12 PHE A 446 TYR A 451 MN A 501 MN A 502 SITE 1 AC4 5 ASN A 308 PRO A 376 ASP A 377 HOH A 651 SITE 2 AC4 5 HOH A 711 SITE 1 AC5 3 LYS A 192 GLU A 255 HOH A 670
CRYST1 40.600 90.831 94.827 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.024631 0.000000 0.000000 0.00000
SCALE2 0.000000 0.011009 0.000000 0.00000
SCALE3 0.000000 0.000000 0.010546 0.00000