10 20 30 40 50 60 70 80 4XON - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER VIRAL PROTEIN 16-JAN-15 4XON
TITLE TAILSPIKE PROTEIN DOUBLE MUTANT D339N/E372Q OF E. COLI BACTERIOPHAGE TITLE 2 HK620
COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAIL SPIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HEAD BINDING, UNP RESIDUES 112-710; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA PHAGE HK620; SOURCE 3 ORGANISM_TAXID: 155148; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET11D
KEYWDS BETA HELIX, PROTEIN-CARBOHYDRATE COMPLEX, PECTIN LYASE FOLD, VIRAL KEYWDS 2 PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR U.GOHLKE,N.K.BROEKER,U.HEINEMANN,R.SECKLER,S.BARBIRZ
REVDAT 1 27-JAN-16 4XON 0
JRNL AUTH U.GOHLKE,N.K.BROEKER,S.KUNSTMANN,M.SANTER,U.HEINEMANN, JRNL AUTH 2 R.LIPOWSKI,R.SECKLER,S.BARBIRZ JRNL TITL ENTHALPIC COST OF WATER REMOVAL FROM A HYDROPHOBIC GLUCOSE JRNL TITL 2 BINDING CAVITY ON HK620 TAILSPIKE PROTEIN. JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.K.BROEKER,U.GOHLKE,J.J.MUELLER,C.UETRECHT,U.HEINEMANN, REMARK 1 AUTH 2 R.SECKLER,S.BARBIRZ REMARK 1 TITL SINGLE AMINO ACID EXCHANGE IN BACTERIOPHAGE HK620 TAILSPIKE REMARK 1 TITL 2 PROTEIN RESULTS IN THOUSAND-FOLD INCREASE OF ITS REMARK 1 TITL 3 OLIGOSACCHARIDE AFFINITY. REMARK 1 REF GLYCOBIOLOGY V. 23 59 2013 REMARK 1 REFN ISSN 0959-6658 REMARK 1 PMID 22923442 REMARK 1 DOI 10.1093/GLYCOB/CWS126
REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 33244 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1663 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2204 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 117 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4547 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 241 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.81000 REMARK 3 B22 (A**2) : 0.81000 REMARK 3 B33 (A**2) : -2.64000 REMARK 3 B12 (A**2) : 0.41000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.234 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.197 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.161 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.731 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4714 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4214 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6427 ; 1.679 ; 1.915 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9628 ; 0.850 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 608 ; 7.337 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 228 ;38.059 ;24.386 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 667 ;12.928 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;18.508 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 700 ; 0.149 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5671 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1218 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2421 ; 0.908 ; 1.622 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2422 ; 0.908 ; 1.623 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3032 ; 1.378 ; 2.432 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 111 A 165 REMARK 3 ORIGIN FOR THE GROUP (A): 33.2125 25.3477 -7.2816 REMARK 3 T TENSOR REMARK 3 T11: 0.3088 T22: 0.3874 REMARK 3 T33: 0.0419 T12: 0.0367 REMARK 3 T13: -0.0201 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 0.8512 L22: 4.8041 REMARK 3 L33: 0.8688 L12: 1.4948 REMARK 3 L13: 0.0399 L23: 0.6139 REMARK 3 S TENSOR REMARK 3 S11: -0.0396 S12: 0.2977 S13: 0.0565 REMARK 3 S21: -0.3640 S22: -0.0521 S23: 0.1129 REMARK 3 S31: 0.0103 S32: -0.0913 S33: 0.0917 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 166 A 380 REMARK 3 ORIGIN FOR THE GROUP (A): 34.5826 41.1388 22.2054 REMARK 3 T TENSOR REMARK 3 T11: 0.2520 T22: 0.1752 REMARK 3 T33: 0.0465 T12: 0.0124 REMARK 3 T13: -0.0540 T23: 0.0274 REMARK 3 L TENSOR REMARK 3 L11: 0.8962 L22: 0.6353 REMARK 3 L33: 2.0239 L12: 0.1672 REMARK 3 L13: -0.0436 L23: -0.1451 REMARK 3 S TENSOR REMARK 3 S11: -0.0718 S12: 0.2147 S13: 0.1564 REMARK 3 S21: -0.1655 S22: -0.0435 S23: 0.0289 REMARK 3 S31: -0.4105 S32: -0.0362 S33: 0.1153 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 381 A 448 REMARK 3 ORIGIN FOR THE GROUP (A): 31.1911 37.7904 42.8051 REMARK 3 T TENSOR REMARK 3 T11: 0.1188 T22: 0.1131 REMARK 3 T33: 0.1240 T12: 0.0440 REMARK 3 T13: -0.0700 T23: -0.0299 REMARK 3 L TENSOR REMARK 3 L11: 2.0181 L22: 0.4649 REMARK 3 L33: 2.7603 L12: -0.2239 REMARK 3 L13: -0.1327 L23: -0.0388 REMARK 3 S TENSOR REMARK 3 S11: 0.0339 S12: 0.3092 S13: 0.1788 REMARK 3 S21: -0.1287 S22: -0.1210 S23: 0.1922 REMARK 3 S31: -0.3394 S32: -0.3114 S33: 0.0871 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 449 A 542 REMARK 3 ORIGIN FOR THE GROUP (A): 37.8941 40.4773 54.4253 REMARK 3 T TENSOR REMARK 3 T11: 0.0599 T22: 0.0024 REMARK 3 T33: 0.0583 T12: 0.0047 REMARK 3 T13: -0.0291 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 3.3541 L22: 0.9190 REMARK 3 L33: 1.8896 L12: 0.5683 REMARK 3 L13: -0.7824 L23: 0.1227 REMARK 3 S TENSOR REMARK 3 S11: -0.0158 S12: 0.0376 S13: 0.3137 REMARK 3 S21: -0.0655 S22: -0.0283 S23: 0.0237 REMARK 3 S31: -0.3071 S32: -0.0374 S33: 0.0440 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 543 A 709 REMARK 3 ORIGIN FOR THE GROUP (A): 40.5695 34.6789 80.5915 REMARK 3 T TENSOR REMARK 3 T11: 0.0267 T22: 0.0416 REMARK 3 T33: 0.1302 T12: -0.0162 REMARK 3 T13: -0.0109 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 0.1975 L22: 0.0887 REMARK 3 L33: 0.9917 L12: 0.0193 REMARK 3 L13: 0.2505 L23: -0.2052 REMARK 3 S TENSOR REMARK 3 S11: -0.0068 S12: -0.0609 S13: 0.0487 REMARK 3 S21: 0.0450 S22: -0.0441 S23: -0.0220 REMARK 3 S31: -0.1300 S32: 0.0416 S33: 0.0509 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED
REMARK 4 REMARK 4 4XON COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000206047.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33244 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 43.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.60200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.2 REMARK 200 STARTING MODEL: 4XOR REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, 3.5 M SODIUM FORMATE, REMARK 280 PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TRIMER GENERATED FROM THE REMARK 300 MONOMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: -Y+1,X-Y,Z AND -X+ REMARK 300 Y+1,-X+1,Z.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -106.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 74.17200 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 37.08600 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 64.23484 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N PRO A 111 O HOH A 901 2.02 REMARK 500 O HOH A 902 O HOH A 976 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1005 O HOH A 1006 2655 2.18 REMARK 500 O HOH A 959 O HOH A 980 3665 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 505 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 133 29.71 48.59 REMARK 500 ILE A 215 -62.12 -106.96 REMARK 500 ASN A 221 10.69 58.85 REMARK 500 ASN A 303 70.19 68.07 REMARK 500 ASN A 315 49.61 38.51 REMARK 500 SER A 319 149.62 -174.17 REMARK 500 ASN A 333 4.71 -150.08 REMARK 500 ALA A 404 32.32 -142.69 REMARK 500 ASP A 441 66.62 70.65 REMARK 500 ASP A 470 -179.34 -63.10 REMARK 500 MET A 523 -67.07 -93.04 REMARK 500 THR A 530 -111.49 -121.23 REMARK 500 THR A 613 -68.14 -104.97 REMARK 500 THR A 678 -160.49 -124.78 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 805 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 565 O REMARK 620 2 SER A 592 O 79.9 REMARK 620 3 SER A 592 O 81.2 5.1 REMARK 620 4 GLN A 594 OE1 82.5 88.5 83.8 REMARK 620 5 HOH A1121 O 94.4 170.3 174.7 98.6 REMARK 620 N 1 2 3 4
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 805
DBREF 4XON A 111 709 UNP Q9AYY6 Q9AYY6_BPHK6 112 710
SEQADV 4XON ASN A 339 UNP Q9AYY6 ASP 340 ENGINEERED MUTATION SEQADV 4XON GLN A 372 UNP Q9AYY6 GLU 373 ENGINEERED MUTATION
SEQRES 1 A 599 PRO ASP GLN PHE ARG ALA ILE ILE GLU SER PRO GLU GLY SEQRES 2 A 599 ALA GLY HIS VAL GLY TYR GLN TYR ARG ARG ASN THR GLY SEQRES 3 A 599 SER THR MET ARG MET VAL SER ASP VAL LEU ASP GLU ARG SEQRES 4 A 599 VAL SER LEU TRP ASP PHE HIS CYS ASP PRO SER GLY ASN SEQRES 5 A 599 VAL ILE GLN PRO GLY PRO ASN VAL ASP SER ARG GLN TYR SEQRES 6 A 599 LEU GLN ALA ALA ILE ASP TYR VAL SER SER ASN GLY GLY SEQRES 7 A 599 GLY THR ILE THR ILE PRO ALA GLY TYR THR TRP TYR LEU SEQRES 8 A 599 GLY SER TYR GLY VAL GLY GLY ILE ALA GLY HIS SER GLY SEQRES 9 A 599 ILE ILE GLN LEU ARG SER ASN VAL ASN LEU ASN ILE GLU SEQRES 10 A 599 GLY ARG ILE HIS LEU SER PRO PHE PHE ASP LEU LYS PRO SEQRES 11 A 599 PHE GLN VAL PHE VAL GLY PHE ASP ASN GLY ASP PRO ALA SEQRES 12 A 599 SER SER GLY ASN LEU GLU ASN CYS HIS ILE TYR GLY HIS SEQRES 13 A 599 GLY VAL VAL ASP PHE GLY GLY TYR GLU PHE GLY ALA SER SEQRES 14 A 599 SER GLN LEU ARG ASN GLY VAL ALA PHE GLY ARG SER TYR SEQRES 15 A 599 ASN CYS SER VAL THR GLY ILE THR PHE GLN ASN GLY ASP SEQRES 16 A 599 VAL THR TRP ALA ILE THR LEU GLY TRP ASN GLY TYR GLY SEQRES 17 A 599 SER ASN CYS TYR VAL ARG LYS CYS ARG PHE ILE ASN LEU SEQRES 18 A 599 VAL ASN SER SER VAL ASN ALA ASN HIS SER THR VAL TYR SEQRES 19 A 599 VAL ASN CYS PRO TYR SER GLY VAL GLU SER CYS TYR PHE SEQRES 20 A 599 SER MET SER SER SER PHE ALA ARG ASN ILE ALA CYS SER SEQRES 21 A 599 VAL GLN LEU HIS GLN HIS ASP THR PHE TYR ARG GLY SER SEQRES 22 A 599 THR VAL ASN GLY TYR CYS ARG GLY ALA TYR VAL VAL MET SEQRES 23 A 599 HIS ALA ALA GLU ALA ALA GLY ALA GLY SER TYR ALA TYR SEQRES 24 A 599 ASN MET GLN VAL GLU ASN ASN ILE ALA VAL ILE TYR GLY SEQRES 25 A 599 GLN PHE VAL ILE LEU GLY SER ASP VAL THR ALA THR VAL SEQRES 26 A 599 SER GLY HIS LEU ASN ASP VAL ILE VAL SER GLY ASN ILE SEQRES 27 A 599 VAL SER ILE GLY GLU ARG ALA ALA PHE SER ALA PRO PHE SEQRES 28 A 599 GLY ALA PHE ILE ASP ILE GLY PRO ASP ASN SER GLY ALA SEQRES 29 A 599 SER ASN VAL GLN ASP ILE GLN ARG VAL LEU VAL THR GLY SEQRES 30 A 599 ASN SER PHE TYR ALA PRO ALA ASN ILE THR ASP SER ALA SEQRES 31 A 599 ALA ILE THR LEU ARG ALA ASN LEU ASN GLY CYS THR PHE SEQRES 32 A 599 ILE ALA ASN ASN PHE ASP CYS ARG TYR MET VAL TYR ASN SEQRES 33 A 599 ALA PRO GLY THR THR SER PRO VAL VAL GLN ASN LEU VAL SEQRES 34 A 599 TRP ASP LYS SER ASN VAL ILE GLY GLY THR HIS ALA ASN SEQRES 35 A 599 GLN ARG ALA GLY GLN ASN LEU PHE ASP MET GLN PHE ALA SEQRES 36 A 599 SER VAL VAL ASN SER THR ILE GLU VAL GLN LEU SER CYS SEQRES 37 A 599 GLU ASP LEU SER MET PHE SER CYS ILE LEU PHE PRO ALA SEQRES 38 A 599 SER CYS GLN LEU SER TYR SER LYS ILE THR VAL ASP SER SEQRES 39 A 599 ALA TRP THR LYS SER MET SER ASN THR ALA VAL PHE GLU SEQRES 40 A 599 GLY ASN GLN GLN ALA GLY ALA ASN VAL TYR VAL SER TYR SEQRES 41 A 599 PRO ALA THR VAL ASN LEU THR SER TYR ASN THR GLN GLY SEQRES 42 A 599 ALA VAL PRO PHE PHE SER THR ASP THR ASN TYR ALA TRP SEQRES 43 A 599 VAL THR SER ALA TYR SER LEU SER ILE ASN GLU ASN LEU SEQRES 44 A 599 ASP PHE SER PRO PRO ALA THR TYR THR ASN LYS ALA ASN SEQRES 45 A 599 GLY GLN LEU VAL GLY VAL GLY TYR ASN GLU ILE GLY GLY SEQRES 46 A 599 VAL ARG SER VAL SER VAL ARG LEU MET LEU GLN ARG GLN SEQRES 47 A 599 VAL
HET TRS A 801 8 HET FMT A 802 3 HET FMT A 803 3 HET FMT A 804 3 HET NA A 805 1
HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM FMT FORMIC ACID HETNAM NA SODIUM ION
HETSYN TRS TRIS BUFFER
FORMUL 2 TRS C4 H12 N O3 1+ FORMUL 3 FMT 3(C H2 O2) FORMUL 6 NA NA 1+ FORMUL 7 HOH *241(H2 O)
HELIX 1 AA1 PRO A 111 SER A 120 1 10 HELIX 2 AA2 GLY A 123 HIS A 126 5 4 HELIX 3 AA3 GLN A 130 ASN A 134 5 5 HELIX 4 AA4 VAL A 142 ASP A 147 1 6 HELIX 5 AA5 SER A 151 PHE A 155 5 5 HELIX 6 AA6 SER A 172 ASN A 186 1 15 HELIX 7 AA7 VAL A 206 HIS A 212 5 7 HELIX 8 AA8 PRO A 234 ASP A 237 5 4 HELIX 9 AA9 ASP A 251 SER A 255 5 5 HELIX 10 AB1 PHE A 363 ILE A 367 1 5 HELIX 11 AB2 HIS A 397 ALA A 401 5 5 HELIX 12 AB3 ASN A 619 GLY A 623 5 5
SHEET 1 AA1 2 GLY A 128 TYR A 129 0 SHEET 2 AA1 2 ARG A 140 MET A 141 -1 O ARG A 140 N TYR A 129 SHEET 1 AA218 GLY A 189 ILE A 193 0 SHEET 2 AA218 VAL A 222 ILE A 226 1 O ASN A 223 N ILE A 191 SHEET 3 AA218 LEU A 258 TYR A 264 1 O TYR A 264 N LEU A 224 SHEET 4 AA218 SER A 291 THR A 297 1 O TYR A 292 N LEU A 258 SHEET 5 AA218 GLY A 318 ARG A 324 1 O SER A 319 N ASN A 293 SHEET 6 AA218 SER A 350 GLU A 353 1 O GLU A 353 N VAL A 323 SHEET 7 AA218 THR A 378 ARG A 381 1 O ARG A 381 N VAL A 352 SHEET 8 AA218 TYR A 407 GLU A 414 1 O GLN A 412 N THR A 378 SHEET 9 AA218 HIS A 438 SER A 445 1 O ILE A 443 N VAL A 413 SHEET 10 AA218 ILE A 480 THR A 486 1 O LEU A 484 N VAL A 444 SHEET 11 AA218 CYS A 511 ILE A 514 1 O THR A 512 N VAL A 485 SHEET 12 AA218 LEU A 538 TRP A 540 1 O VAL A 539 N PHE A 513 SHEET 13 AA218 THR A 571 VAL A 574 1 O THR A 571 N LEU A 538 SHEET 14 AA218 SER A 598 VAL A 602 1 O THR A 601 N VAL A 574 SHEET 15 AA218 VAL A 626 SER A 638 1 O TYR A 627 N SER A 598 SHEET 16 AA218 GLY A 643 SER A 649 -1 O PHE A 648 N THR A 637 SHEET 17 AA218 LEU A 685 ASN A 691 -1 O ASN A 691 N GLY A 643 SHEET 18 AA218 PHE A 671 SER A 672 -1 N SER A 672 O TYR A 690 SHEET 1 AA320 GLY A 189 ILE A 193 0 SHEET 2 AA320 VAL A 222 ILE A 226 1 O ASN A 223 N ILE A 191 SHEET 3 AA320 LEU A 258 TYR A 264 1 O TYR A 264 N LEU A 224 SHEET 4 AA320 SER A 291 THR A 297 1 O TYR A 292 N LEU A 258 SHEET 5 AA320 GLY A 318 ARG A 324 1 O SER A 319 N ASN A 293 SHEET 6 AA320 SER A 350 GLU A 353 1 O GLU A 353 N VAL A 323 SHEET 7 AA320 THR A 378 ARG A 381 1 O ARG A 381 N VAL A 352 SHEET 8 AA320 TYR A 407 GLU A 414 1 O GLN A 412 N THR A 378 SHEET 9 AA320 HIS A 438 SER A 445 1 O ILE A 443 N VAL A 413 SHEET 10 AA320 ILE A 480 THR A 486 1 O LEU A 484 N VAL A 444 SHEET 11 AA320 CYS A 511 ILE A 514 1 O THR A 512 N VAL A 485 SHEET 12 AA320 LEU A 538 TRP A 540 1 O VAL A 539 N PHE A 513 SHEET 13 AA320 THR A 571 VAL A 574 1 O THR A 571 N LEU A 538 SHEET 14 AA320 SER A 598 VAL A 602 1 O THR A 601 N VAL A 574 SHEET 15 AA320 VAL A 626 SER A 638 1 O TYR A 627 N SER A 598 SHEET 16 AA320 SER A 698 ARG A 707 -1 O LEU A 703 N ALA A 632 SHEET 17 AA320 SER A 659 SER A 662 -1 N TYR A 661 O MET A 704 SHEET 18 AA320 THR A 676 ASN A 679 -1 O TYR A 677 N ALA A 660 SHEET 19 AA320 LEU A 685 ASN A 691 -1 O VAL A 686 N THR A 678 SHEET 20 AA320 PHE A 671 SER A 672 -1 N SER A 672 O TYR A 690 SHEET 1 AA412 THR A 198 LEU A 201 0 SHEET 2 AA412 ARG A 229 LEU A 232 1 O ARG A 229 N TRP A 199 SHEET 3 AA412 VAL A 268 ASP A 270 1 O ASP A 270 N ILE A 230 SHEET 4 AA412 THR A 300 GLN A 302 1 O THR A 300 N VAL A 269 SHEET 5 AA412 ARG A 327 ILE A 329 1 O ARG A 327 N PHE A 301 SHEET 6 AA412 TYR A 356 SER A 358 1 O SER A 358 N PHE A 328 SHEET 7 AA412 THR A 384 TYR A 388 1 O THR A 384 N PHE A 357 SHEET 8 AA412 ILE A 417 ILE A 420 1 O ILE A 417 N VAL A 385 SHEET 9 AA412 ILE A 448 ILE A 451 1 O SER A 450 N ALA A 418 SHEET 10 AA412 SER A 489 TYR A 491 1 O TYR A 491 N ILE A 451 SHEET 11 AA412 ASN A 517 ASP A 519 1 O ASP A 519 N PHE A 490 SHEET 12 AA412 VAL A 545 ILE A 546 1 O VAL A 545 N PHE A 518 SHEET 1 AA511 GLY A 214 GLN A 217 0 SHEET 2 AA511 PHE A 241 VAL A 245 1 O VAL A 243 N ILE A 216 SHEET 3 AA511 ARG A 283 ALA A 287 1 O ALA A 287 N PHE A 244 SHEET 4 AA511 ILE A 310 LEU A 312 1 O THR A 311 N VAL A 286 SHEET 5 AA511 HIS A 340 VAL A 345 1 O TYR A 344 N LEU A 312 SHEET 6 AA511 ALA A 368 LEU A 373 1 O CYS A 369 N HIS A 340 SHEET 7 AA511 ARG A 390 MET A 396 1 O TYR A 393 N LEU A 373 SHEET 8 AA511 GLN A 423 SER A 429 1 O PHE A 424 N ALA A 392 SHEET 9 AA511 GLY A 462 ILE A 467 1 O ASP A 466 N LEU A 427 SHEET 10 AA511 SER A 499 LEU A 504 1 O ALA A 501 N ILE A 465 SHEET 11 AA511 TYR A 522 TYR A 525 1 O TYR A 525 N LEU A 504 SHEET 1 AA6 3 VAL A 534 GLN A 536 0 SHEET 2 AA6 3 SER A 566 VAL A 568 1 O SER A 566 N VAL A 535 SHEET 3 AA6 3 GLN A 594 SER A 596 1 O GLN A 594 N VAL A 567 SHEET 1 AA7 3 ASN A 558 ASP A 561 0 SHEET 2 AA7 3 SER A 585 PHE A 589 1 O SER A 585 N LEU A 559 SHEET 3 AA7 3 ALA A 614 PHE A 616 1 O VAL A 615 N ILE A 587
LINK O ALA A 565 NA NA A 805 1555 1555 2.68 LINK O ASER A 592 NA NA A 805 1555 1555 2.60 LINK O BSER A 592 NA NA A 805 1555 1555 2.59 LINK OE1 GLN A 594 NA NA A 805 1555 1555 2.14 LINK NA NA A 805 O HOH A1121 1555 1555 2.55
SITE 1 AC1 8 VAL A 568 ASN A 569 TYR A 597 ASP A 670 SITE 2 AC1 8 ILE A 693 ARG A 697 HOH A 928 HOH A 944 SITE 1 AC2 6 TYR A 597 ASN A 625 LEU A 669 ASP A 670 SITE 2 AC2 6 HOH A 905 HOH A1016 SITE 1 AC3 6 VAL A 634 ASN A 635 SER A 649 THR A 650 SITE 2 AC3 6 ASP A 651 TYR A 654 SITE 1 AC4 2 ARG A 140 ASP A 144 SITE 1 AC5 4 ALA A 565 SER A 592 GLN A 594 HOH A1121
CRYST1 74.172 74.172 174.611 90.00 90.00 120.00 P 3 2 1 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.013482 0.007784 0.000000 0.00000
SCALE2 0.000000 0.015568 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005727 0.00000