4X4H - Header Asymmetric Unit

HEADER GENE REGULATION 02-DEC-14 4X4H

TITLE RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.ESP1396I: DOSE (DWD) TITLE 2 35.7 MGY

COMPND MOL_ID: 1; COMPND 2 MOLECULE: REGULATORY PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: CONTROLLER PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 35-MER DNA; COMPND 8 CHAIN: E; COMPND 9 SYNONYM: OPERATOR DNA; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: 35-MER DNA; COMPND 13 CHAIN: F; COMPND 14 SYNONYM: OPERATOR DNA; COMPND 15 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTER SP. RFL1396; SOURCE 3 ORGANISM_TAXID: 211595; SOURCE 4 GENE: ESP1396IC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: GOLD; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET23; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 OTHER_DETAILS: CHEMICALLY SYNTHESISED DNA; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630; SOURCE 19 OTHER_DETAILS: CHEMICALLY SYNTHESISED DNA

KEYWDS PROTEIN-DNA COMPLEX, RADIATION DAMAGE, GENE REGULATION

EXPDTA X-RAY DIFFRACTION

AUTHOR C.S.BURY,J.E.MCGEEHAN,E.F.GARMAN

REVDAT 1 11-MAR-15 4X4H 0

JRNL AUTH C.BURY,E.F.GARMAN,H.M.GINN,R.B.RAVELLI,I.CARMICHAEL, JRNL AUTH 2 G.KNEALE,J.E.MCGEEHAN JRNL TITL RADIATION DAMAGE TO NUCLEOPROTEIN COMPLEXES IN JRNL TITL 2 MACROMOLECULAR CRYSTALLOGRAPHY. JRNL REF J.SYNCHROTRON RADIAT. V. 22 213 2015 JRNL REFN ESSN 1600-5775 JRNL PMID 25723923 JRNL DOI 10.1107/S1600577514026289

REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.E.MCGEEHAN,S.D.STREETER,S.J.THRESH,N.BALL,R.B.RAVELLI, REMARK 1 AUTH 2 G.G.KNEALE REMARK 1 TITL STRUCTURAL ANALYSIS OF THE GENETIC SWITCH THAT REGULATES THE REMARK 1 TITL 2 EXPRESSION OF RESTRICTION-MODIFICATION GENES. REMARK 1 REF NUCLEIC ACIDS RES. V. 36 4778 2008 REMARK 1 REFN ESSN 1362-4962 REMARK 1 PMID 18644840 REMARK 1 DOI 10.1093/NAR/GKN448

REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 21014 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.248 REMARK 3 R VALUE (WORKING SET) : 0.246 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1075 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.0334 - 5.5596 0.95 2428 126 0.1865 0.1647 REMARK 3 2 5.5596 - 4.4311 1.00 2527 132 0.2131 0.2657 REMARK 3 3 4.4311 - 3.8764 1.00 2463 153 0.2322 0.3085 REMARK 3 4 3.8764 - 3.5244 1.00 2522 134 0.2720 0.3882 REMARK 3 5 3.5244 - 3.2732 1.00 2496 127 0.2881 0.3272 REMARK 3 6 3.2732 - 3.0810 1.00 2530 104 0.3107 0.4113 REMARK 3 7 3.0810 - 2.9273 1.00 2481 161 0.3467 0.4248 REMARK 3 8 2.9273 - 2.8003 1.00 2492 138 0.3841 0.4266 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.500 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4120 REMARK 3 ANGLE : 1.338 5823 REMARK 3 CHIRALITY : 0.062 680 REMARK 3 PLANARITY : 0.005 474 REMARK 3 DIHEDRAL : 25.257 1686 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 1496 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN C REMARK 3 ATOM PAIRS NUMBER : 1496 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN D REMARK 3 ATOM PAIRS NUMBER : 1496 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN E REMARK 3 SELECTION : CHAIN F REMARK 3 ATOM PAIRS NUMBER : 498 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 4X4H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205070.

REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.932 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.2.8 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21052 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 69.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.69400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3CLC REMARK 200 REMARK 200 REMARK: NULL

REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES, MPD, MGCL2, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293.15K

REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.68667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.34333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 69.51500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 23.17167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 115.85833 REMARK 290 REMARK 290 REMARK: NULL

REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM.

REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000

REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 HIS A 78 REMARK 465 ASP A 79 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ASP B 79 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 ASP C 79 REMARK 465 GLY D -2 REMARK 465 SER D -1 REMARK 465 HIS D 0 REMARK 465 MET D 1 REMARK 465 HIS D 78 REMARK 465 ASP D 79

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR C 37 OP2 DA F 13 2.11 REMARK 500 OH TYR B 37 OP2 DG E 13 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA E 10 O3' DA E 10 C3' -0.060 REMARK 500 DA E 32 O3' DA E 32 C3' -0.041 REMARK 500 DA F 10 O3' DA F 10 C3' -0.057 REMARK 500 DA F 25 O3' DA F 25 C3' -0.045 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA E 6 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DT E 11 C3' - C2' - C1' ANGL. DEV. = -5.5 DEGREES REMARK 500 DT E 11 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DG E 13 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC E 16 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG E 17 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT E 20 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG E 21 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DT E 29 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC E 30 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DT F 11 C3' - C2' - C1' ANGL. DEV. = -5.2 DEGREES REMARK 500 DT F 11 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA F 13 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC F 17 O4' - C1' - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 DT F 26 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 DT F 26 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG F 29 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA F 32 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 61 74.35 50.55 REMARK 500 LEU A 76 43.14 -85.55 REMARK 500 TYR B 29 -72.01 -68.96 REMARK 500 ASN B 32 49.87 32.67 REMARK 500 SER B 45 42.59 32.53 REMARK 500 LEU C 76 41.72 -79.37 REMARK 500 GLU D 61 71.45 49.95 REMARK 500 LEU D 76 49.26 -91.33 REMARK 500 REMARK 500 REMARK: NULL

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3CLC RELATED DB: PDB REMARK 900 THE NEW STRUCTURE IS PART OF A RADIATION DAMAGE STUDY ON THE REMARK 900 PROTEIN-DNA COMPLEX WITH PDB CODE 3CLC REMARK 900 RELATED ID: 4X4B RELATED DB: PDB REMARK 900 IN THIS RADIATION DAMAGE STUDY, 4X4B IS THE SAME PROTEIN-DNA REMARK 900 COMPLEX AT A DOSE (DWD) OF 2.1MGY REMARK 900 RELATED ID: 4X4C RELATED DB: PDB REMARK 900 IN THIS RADIATION DAMAGE STUDY, 4X4C IS THE SAME PROTEIN-DNA REMARK 900 COMPLEX AT A DOSE (DWD) OF 6.2MGY REMARK 900 RELATED ID: 4X4D RELATED DB: PDB REMARK 900 IN THIS RADIATION DAMAGE STUDY, 4X4D IS THE SAME PROTEIN-DNA REMARK 900 COMPLEX AT A DOSE (DWD) OF 10.3MGY REMARK 900 RELATED ID: 4X4E RELATED DB: PDB REMARK 900 IN THIS RADIATION DAMAGE STUDY, 4X4E IS THE SAME PROTEIN-DNA REMARK 900 COMPLEX AT A DOSE (DWD) OF 14.4MGY REMARK 900 RELATED ID: 4X4F RELATED DB: PDB REMARK 900 IN THIS RADIATION DAMAGE STUDY, 4X4F IS THE SAME PROTEIN-DNA REMARK 900 COMPLEX AT A DOSE (DWD) OF 20.6MGY REMARK 900 RELATED ID: 4X4G RELATED DB: PDB REMARK 900 IN THIS RADIATION DAMAGE STUDY, 4X4G IS THE SAME PROTEIN-DNA REMARK 900 COMPLEX AT A DOSE (DWD) OF 26.8MGY

DBREF 4X4H A 1 79 UNP Q8GGH0 Q8GGH0_9ENTR 1 79 DBREF 4X4H B 1 79 UNP Q8GGH0 Q8GGH0_9ENTR 1 79 DBREF 4X4H C 1 79 UNP Q8GGH0 Q8GGH0_9ENTR 1 79 DBREF 4X4H D 1 79 UNP Q8GGH0 Q8GGH0_9ENTR 1 79 DBREF 4X4H E 1 35 PDB 4X4H 4X4H 1 35 DBREF 4X4H F 1 35 PDB 4X4H 4X4H 1 35

SEQADV 4X4H GLY A -2 UNP Q8GGH0 EXPRESSION TAG SEQADV 4X4H SER A -1 UNP Q8GGH0 EXPRESSION TAG SEQADV 4X4H HIS A 0 UNP Q8GGH0 EXPRESSION TAG SEQADV 4X4H GLY B -2 UNP Q8GGH0 EXPRESSION TAG SEQADV 4X4H SER B -1 UNP Q8GGH0 EXPRESSION TAG SEQADV 4X4H HIS B 0 UNP Q8GGH0 EXPRESSION TAG SEQADV 4X4H GLY C -2 UNP Q8GGH0 EXPRESSION TAG SEQADV 4X4H SER C -1 UNP Q8GGH0 EXPRESSION TAG SEQADV 4X4H HIS C 0 UNP Q8GGH0 EXPRESSION TAG SEQADV 4X4H GLY D -2 UNP Q8GGH0 EXPRESSION TAG SEQADV 4X4H SER D -1 UNP Q8GGH0 EXPRESSION TAG SEQADV 4X4H HIS D 0 UNP Q8GGH0 EXPRESSION TAG

SEQRES 1 A 82 GLY SER HIS MET GLU SER PHE LEU LEU SER LYS VAL SER SEQRES 2 A 82 PHE VAL ILE LYS LYS ILE ARG LEU GLU LYS GLY MET THR SEQRES 3 A 82 GLN GLU ASP LEU ALA TYR LYS SER ASN LEU ASP ARG THR SEQRES 4 A 82 TYR ILE SER GLY ILE GLU ARG ASN SER ARG ASN LEU THR SEQRES 5 A 82 ILE LYS SER LEU GLU LEU ILE MET LYS GLY LEU GLU VAL SEQRES 6 A 82 SER ASP VAL VAL PHE PHE GLU MET LEU ILE LYS GLU ILE SEQRES 7 A 82 LEU LYS HIS ASP SEQRES 1 B 82 GLY SER HIS MET GLU SER PHE LEU LEU SER LYS VAL SER SEQRES 2 B 82 PHE VAL ILE LYS LYS ILE ARG LEU GLU LYS GLY MET THR SEQRES 3 B 82 GLN GLU ASP LEU ALA TYR LYS SER ASN LEU ASP ARG THR SEQRES 4 B 82 TYR ILE SER GLY ILE GLU ARG ASN SER ARG ASN LEU THR SEQRES 5 B 82 ILE LYS SER LEU GLU LEU ILE MET LYS GLY LEU GLU VAL SEQRES 6 B 82 SER ASP VAL VAL PHE PHE GLU MET LEU ILE LYS GLU ILE SEQRES 7 B 82 LEU LYS HIS ASP SEQRES 1 C 82 GLY SER HIS MET GLU SER PHE LEU LEU SER LYS VAL SER SEQRES 2 C 82 PHE VAL ILE LYS LYS ILE ARG LEU GLU LYS GLY MET THR SEQRES 3 C 82 GLN GLU ASP LEU ALA TYR LYS SER ASN LEU ASP ARG THR SEQRES 4 C 82 TYR ILE SER GLY ILE GLU ARG ASN SER ARG ASN LEU THR SEQRES 5 C 82 ILE LYS SER LEU GLU LEU ILE MET LYS GLY LEU GLU VAL SEQRES 6 C 82 SER ASP VAL VAL PHE PHE GLU MET LEU ILE LYS GLU ILE SEQRES 7 C 82 LEU LYS HIS ASP SEQRES 1 D 82 GLY SER HIS MET GLU SER PHE LEU LEU SER LYS VAL SER SEQRES 2 D 82 PHE VAL ILE LYS LYS ILE ARG LEU GLU LYS GLY MET THR SEQRES 3 D 82 GLN GLU ASP LEU ALA TYR LYS SER ASN LEU ASP ARG THR SEQRES 4 D 82 TYR ILE SER GLY ILE GLU ARG ASN SER ARG ASN LEU THR SEQRES 5 D 82 ILE LYS SER LEU GLU LEU ILE MET LYS GLY LEU GLU VAL SEQRES 6 D 82 SER ASP VAL VAL PHE PHE GLU MET LEU ILE LYS GLU ILE SEQRES 7 D 82 LEU LYS HIS ASP SEQRES 1 E 35 DA DT DG DT DG DA DC DT DT DA DT DA DG SEQRES 2 E 35 DT DC DC DG DT DG DT DG DA DT DT DA DT SEQRES 3 E 35 DA DG DT DC DA DA DC DA DT SEQRES 1 F 35 DA DT DG DT DT DG DA DC DT DA DT DA DA SEQRES 2 F 35 DT DC DA DC DA DC DG DG DA DC DT DA DT SEQRES 3 F 35 DA DA DG DT DC DA DC DA DT

HELIX 1 AA1 SER A 3 LYS A 20 1 18 HELIX 2 AA2 THR A 23 ASN A 32 1 10 HELIX 3 AA3 ASP A 34 ARG A 43 1 10 HELIX 4 AA4 THR A 49 GLU A 61 1 13 HELIX 5 AA5 SER A 63 LEU A 76 1 14 HELIX 6 AA6 SER B 3 LYS B 20 1 18 HELIX 7 AA7 THR B 23 SER B 31 1 9 HELIX 8 AA8 ASP B 34 SER B 45 1 12 HELIX 9 AA9 THR B 49 LEU B 60 1 12 HELIX 10 AB1 SER B 63 LEU B 76 1 14 HELIX 11 AB2 SER C 3 LYS C 20 1 18 HELIX 12 AB3 THR C 23 SER C 31 1 9 HELIX 13 AB4 ASP C 34 ASN C 44 1 11 HELIX 14 AB5 THR C 49 LEU C 60 1 12 HELIX 15 AB6 SER C 63 LEU C 76 1 14 HELIX 16 AB7 SER D 3 LYS D 20 1 18 HELIX 17 AB8 THR D 23 ASN D 32 1 10 HELIX 18 AB9 ASP D 34 ARG D 43 1 10 HELIX 19 AC1 THR D 49 LEU D 60 1 12 HELIX 20 AC2 SER D 63 LEU D 76 1 14

CRYST1 104.430 104.430 139.030 90.00 90.00 120.00 P 65 24

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 0.009576 0.005529 0.000000 0.00000

SCALE2 0.000000 0.011057 0.000000 0.00000

SCALE3 0.000000 0.000000 0.007193 0.00000