10 20 30 40 50 60 70 80 4X24 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE/HYDROLASE INHIBITOR 25-NOV-14 4X24
TITLE CRYSTAL STRUCTURE OF VIBRIO CHOLERAE 5'-METHYLTHIOADENOSINE/S-ADENOSYL TITLE 2 HOMOCYSTEINE NUCLEOSIDASE (MTAN) COMPLEXED WITH METHYLTHIO-DADME- TITLE 3 IMMUCILLIN-A
COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-METHYLTHIOADENOSINE/S-ADENOSYLHOMOCYSTEINE NUCLEOSIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MTAN,5'-METHYLTHIOADENOSINE NUCLEOSIDASE,MTA NUCLEOSIDASE,S- COMPND 5 ADENOSYLHOMOCYSTEINE NUCLEOSIDASE,SRH NUCLEOSIDASE; COMPND 6 EC: 3.2.2.9; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE SEROTYPE O1 (STRAIN ATCC 39541 SOURCE 3 / CLASSICAL OGAWA 395 / O395); SOURCE 4 ORGANISM_TAXID: 345073; SOURCE 5 STRAIN: ATCC 39541 / CLASSICAL OGAWA 395 / O395; SOURCE 6 GENE: MTNN, PFS, VC0395_A1957, VC395_2494; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PDEST14
KEYWDS HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR S.A.CAMERON,K.THOMAS,S.C.ALMO,V.L.SCHRAMM
REVDAT 1 19-AUG-15 4X24 0
JRNL AUTH K.THOMAS,S.A.CAMERON,S.C.ALMO,E.S.BURGOS,S.A.GULAB, JRNL AUTH 2 V.L.SCHRAMM JRNL TITL ACTIVE SITE AND REMOTE CONTRIBUTIONS TO CATALYSIS IN JRNL TITL 2 METHYLTHIOADENOSINE NUCLEOSIDASES. JRNL REF BIOCHEMISTRY V. 54 2520 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 25806409 JRNL DOI 10.1021/BI501487W
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.A.GUTIERREZ,T.CROWDER,A.RINALDO-MATTHIS,M.-C.HO,S.C.ALMO, REMARK 1 AUTH 2 V.L.SCHRAMM REMARK 1 TITL TRANSITION STATE ANALOGS OF 5'-METHYLTHIOADENOSINE REMARK 1 TITL 2 NUCLEOSIDASE DISRUPT QUORUM SENSING REMARK 1 REF NAT.CHEM.BIOL. 251 2009 REMARK 1 REFN ISSN 1552-4450 REMARK 1 PMID 19270684 REMARK 1 DOI 10.1038/NCHEMBIO.153
REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 66097 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3448 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4768 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 264 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3509 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.00000 REMARK 3 B22 (A**2) : -0.12000 REMARK 3 B33 (A**2) : -0.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.24000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.072 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.070 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.052 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.418 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3661 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3535 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4979 ; 1.455 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8133 ; 0.972 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 487 ; 5.866 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 146 ;36.259 ;26.027 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 597 ;11.333 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;13.133 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 593 ; 0.154 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4206 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 790 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1910 ; 0.874 ; 1.585 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1909 ; 0.874 ; 1.583 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2388 ; 1.403 ; 2.374 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY
REMARK 4 REMARK 4 4X24 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000204936.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69602 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.68500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.780 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.2.08 REMARK 200 STARTING MODEL: 3DP9 REMARK 200 REMARK 200 REMARK: RODS
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (10 MG/ML); RESERVOIR (0.2M REMARK 280 AMMONIUM CHLORIDE PH 6.3 AND 20% PEG 3350); CRYOPROTECTION (20% REMARK 280 (V/V) GLYCEROL), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.35400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 238 REMARK 465 HIS A 239 REMARK 465 HIS A 240 REMARK 465 HIS A 241 REMARK 465 HIS A 242 REMARK 465 HIS A 243 REMARK 465 HIS A 244 REMARK 465 GLY B 238 REMARK 465 HIS B 239 REMARK 465 HIS B 240 REMARK 465 HIS B 241 REMARK 465 HIS B 242 REMARK 465 HIS B 243 REMARK 465 HIS B 244
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 17 NZ REMARK 470 GLU A 203 CD OE1 OE2 REMARK 470 GLN A 237 CG CD OE1 NE2 REMARK 470 GLN B 10 CG CD OE1 NE2 REMARK 470 LYS B 17 CE NZ REMARK 470 LYS B 120 CG CD CE NZ REMARK 470 LYS B 124 CD CE NZ REMARK 470 GLU B 157 CG CD OE1 OE2 REMARK 470 GLU B 203 CG CD OE1 OE2 REMARK 470 GLN B 237 CG CD OE1 NE2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 150 36.65 -91.32 REMARK 500 CYS A 154 25.77 -155.44 REMARK 500 GLU A 173 -161.45 -161.47 REMARK 500 ASP B 150 42.20 -87.38 REMARK 500 CYS B 154 23.02 -154.66 REMARK 500 GLU B 173 -158.67 -160.70 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 533 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH A 544 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH A 564 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH B 526 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH B 527 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH B 528 DISTANCE = 6.11 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TDI A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TDI B 301
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WKB RELATED DB: PDB REMARK 900 4WKB CONTAINS THE SAME PROTEIN (WITHOUT MUTATIONS) COMPLEXED WITH REMARK 900 MTDIA REMARK 900 RELATED ID: 3DP9 RELATED DB: PDB REMARK 900 3DP9 CONTAINS THE SAME PROTEIN (WITHOUT MUTATIONS) COMPLEXED WITH REMARK 900 BTDIA
DBREF 4X24 A 1 231 UNP A5F5R2 MTNN_VIBC3 1 231 DBREF 4X24 B 1 231 UNP A5F5R2 MTNN_VIBC3 1 231
SEQADV 4X24 PRO A 113 UNP A5F5R2 ALA 113 ENGINEERED MUTATION SEQADV 4X24 ILE A 153 UNP A5F5R2 VAL 153 ENGINEERED MUTATION SEQADV 4X24 GLY A 158 UNP A5F5R2 ARG 158 ENGINEERED MUTATION SEQADV 4X24 GLU A 232 UNP A5F5R2 EXPRESSION TAG SEQADV 4X24 ASN A 233 UNP A5F5R2 EXPRESSION TAG SEQADV 4X24 LEU A 234 UNP A5F5R2 EXPRESSION TAG SEQADV 4X24 TYR A 235 UNP A5F5R2 EXPRESSION TAG SEQADV 4X24 PHE A 236 UNP A5F5R2 EXPRESSION TAG SEQADV 4X24 GLN A 237 UNP A5F5R2 EXPRESSION TAG SEQADV 4X24 GLY A 238 UNP A5F5R2 EXPRESSION TAG SEQADV 4X24 HIS A 239 UNP A5F5R2 EXPRESSION TAG SEQADV 4X24 HIS A 240 UNP A5F5R2 EXPRESSION TAG SEQADV 4X24 HIS A 241 UNP A5F5R2 EXPRESSION TAG SEQADV 4X24 HIS A 242 UNP A5F5R2 EXPRESSION TAG SEQADV 4X24 HIS A 243 UNP A5F5R2 EXPRESSION TAG SEQADV 4X24 HIS A 244 UNP A5F5R2 EXPRESSION TAG SEQADV 4X24 PRO B 113 UNP A5F5R2 ALA 113 ENGINEERED MUTATION SEQADV 4X24 ILE B 153 UNP A5F5R2 VAL 153 ENGINEERED MUTATION SEQADV 4X24 GLY B 158 UNP A5F5R2 ARG 158 ENGINEERED MUTATION SEQADV 4X24 GLU B 232 UNP A5F5R2 EXPRESSION TAG SEQADV 4X24 ASN B 233 UNP A5F5R2 EXPRESSION TAG SEQADV 4X24 LEU B 234 UNP A5F5R2 EXPRESSION TAG SEQADV 4X24 TYR B 235 UNP A5F5R2 EXPRESSION TAG SEQADV 4X24 PHE B 236 UNP A5F5R2 EXPRESSION TAG SEQADV 4X24 GLN B 237 UNP A5F5R2 EXPRESSION TAG SEQADV 4X24 GLY B 238 UNP A5F5R2 EXPRESSION TAG SEQADV 4X24 HIS B 239 UNP A5F5R2 EXPRESSION TAG SEQADV 4X24 HIS B 240 UNP A5F5R2 EXPRESSION TAG SEQADV 4X24 HIS B 241 UNP A5F5R2 EXPRESSION TAG SEQADV 4X24 HIS B 242 UNP A5F5R2 EXPRESSION TAG SEQADV 4X24 HIS B 243 UNP A5F5R2 EXPRESSION TAG SEQADV 4X24 HIS B 244 UNP A5F5R2 EXPRESSION TAG
SEQRES 1 A 244 MET LYS ILE GLY ILE ILE GLY ALA MET GLN GLN GLU VAL SEQRES 2 A 244 ALA ILE LEU LYS ASP LEU ILE GLU ASP VAL GLN GLU VAL SEQRES 3 A 244 ASN GLN ALA GLY CYS THR PHE TYR SER GLY GLN ILE GLN SEQRES 4 A 244 GLY VAL ASP VAL VAL LEU LEU GLN SER GLY ILE GLY LYS SEQRES 5 A 244 VAL SER ALA ALA LEU GLY THR ALA LEU LEU ILE SER GLN SEQRES 6 A 244 TYR ALA PRO ASP VAL VAL ILE ASN THR GLY SER ALA GLY SEQRES 7 A 244 GLY PHE ASP ALA SER LEU ASN VAL GLY ASP VAL VAL ILE SEQRES 8 A 244 SER SER GLU VAL ARG HIS HIS ASP ALA ASP VAL THR ALA SEQRES 9 A 244 PHE GLY TYR GLU ILE GLY GLN MET PRO GLY GLN PRO ALA SEQRES 10 A 244 ALA PHE LYS ALA ASP GLU LYS LEU MET THR VAL ALA GLU SEQRES 11 A 244 GLN ALA LEU ALA GLN LEU PRO ASN THR HIS ALA VAL ARG SEQRES 12 A 244 GLY LEU ILE CYS THR GLY ASP ALA PHE ILE CYS THR ALA SEQRES 13 A 244 GLU GLY GLN GLN PHE ILE ARG GLN HIS PHE PRO SER VAL SEQRES 14 A 244 VAL ALA VAL GLU MET GLU ALA SER ALA ILE ALA GLN THR SEQRES 15 A 244 CYS HIS GLN PHE LYS VAL PRO PHE VAL VAL VAL ARG ALA SEQRES 16 A 244 ILE SER ASP VAL ALA ASP LYS GLU SER PRO LEU SER PHE SEQRES 17 A 244 GLU GLU PHE LEU PRO LEU ALA ALA LYS SER SER SER ALA SEQRES 18 A 244 MET VAL LEU LYS MET VAL GLU LEU LEU LYS GLU ASN LEU SEQRES 19 A 244 TYR PHE GLN GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 244 MET LYS ILE GLY ILE ILE GLY ALA MET GLN GLN GLU VAL SEQRES 2 B 244 ALA ILE LEU LYS ASP LEU ILE GLU ASP VAL GLN GLU VAL SEQRES 3 B 244 ASN GLN ALA GLY CYS THR PHE TYR SER GLY GLN ILE GLN SEQRES 4 B 244 GLY VAL ASP VAL VAL LEU LEU GLN SER GLY ILE GLY LYS SEQRES 5 B 244 VAL SER ALA ALA LEU GLY THR ALA LEU LEU ILE SER GLN SEQRES 6 B 244 TYR ALA PRO ASP VAL VAL ILE ASN THR GLY SER ALA GLY SEQRES 7 B 244 GLY PHE ASP ALA SER LEU ASN VAL GLY ASP VAL VAL ILE SEQRES 8 B 244 SER SER GLU VAL ARG HIS HIS ASP ALA ASP VAL THR ALA SEQRES 9 B 244 PHE GLY TYR GLU ILE GLY GLN MET PRO GLY GLN PRO ALA SEQRES 10 B 244 ALA PHE LYS ALA ASP GLU LYS LEU MET THR VAL ALA GLU SEQRES 11 B 244 GLN ALA LEU ALA GLN LEU PRO ASN THR HIS ALA VAL ARG SEQRES 12 B 244 GLY LEU ILE CYS THR GLY ASP ALA PHE ILE CYS THR ALA SEQRES 13 B 244 GLU GLY GLN GLN PHE ILE ARG GLN HIS PHE PRO SER VAL SEQRES 14 B 244 VAL ALA VAL GLU MET GLU ALA SER ALA ILE ALA GLN THR SEQRES 15 B 244 CYS HIS GLN PHE LYS VAL PRO PHE VAL VAL VAL ARG ALA SEQRES 16 B 244 ILE SER ASP VAL ALA ASP LYS GLU SER PRO LEU SER PHE SEQRES 17 B 244 GLU GLU PHE LEU PRO LEU ALA ALA LYS SER SER SER ALA SEQRES 18 B 244 MET VAL LEU LYS MET VAL GLU LEU LEU LYS GLU ASN LEU SEQRES 19 B 244 TYR PHE GLN GLY HIS HIS HIS HIS HIS HIS
HET TDI A 301 20 HET PGE A 302 10 HET TDI B 301 20
HETNAM TDI (3R,4S)-1-[(4-AMINO-5H-PYRROLO[3,2-D]PYRIMIDIN-7-YL) HETNAM 2 TDI METHYL]-4-[(METHYLSULFANYL)METHYL]PYRROLIDIN-3-OL HETNAM PGE TRIETHYLENE GLYCOL
HETSYN TDI (3R,4S)-1-[9-DEAZAADENIN-9-YL)METHYL]-3-HYDROXY-4- HETSYN 2 TDI (METHYLTHIOMETHYL)PYRROLIDINE
FORMUL 3 TDI 2(C13 H19 N5 O S) FORMUL 4 PGE C6 H14 O4 FORMUL 6 HOH *360(H2 O)
HELIX 1 AA1 MET A 9 ASP A 18 1 10 HELIX 2 AA2 GLY A 51 ALA A 67 1 17 HELIX 3 AA3 VAL A 102 GLY A 106 5 5 HELIX 4 AA4 ASP A 122 GLN A 135 1 14 HELIX 5 AA5 THR A 155 PHE A 166 1 12 HELIX 6 AA6 GLU A 175 LYS A 187 1 13 HELIX 7 AA7 GLU A 203 LEU A 234 1 32 HELIX 8 AA8 MET B 9 ASP B 18 1 10 HELIX 9 AA9 GLY B 51 ALA B 67 1 17 HELIX 10 AB1 VAL B 102 GLY B 106 5 5 HELIX 11 AB2 ASP B 122 GLN B 135 1 14 HELIX 12 AB3 THR B 155 PHE B 166 1 12 HELIX 13 AB4 GLU B 175 LYS B 187 1 13 HELIX 14 AB5 GLU B 203 GLU B 232 1 30
SHEET 1 AA1 9 GLU A 21 GLN A 28 0 SHEET 2 AA1 9 CYS A 31 ILE A 38 -1 O GLN A 37 N GLU A 21 SHEET 3 AA1 9 VAL A 41 GLN A 47 -1 O LEU A 45 N TYR A 34 SHEET 4 AA1 9 LYS A 2 GLY A 7 1 N ILE A 5 O LEU A 46 SHEET 5 AA1 9 VAL A 70 GLY A 79 1 O VAL A 70 N GLY A 4 SHEET 6 AA1 9 VAL A 169 GLU A 173 -1 O VAL A 172 N GLY A 78 SHEET 7 AA1 9 ALA A 141 THR A 148 1 N LEU A 145 O VAL A 170 SHEET 8 AA1 9 VAL A 89 HIS A 97 1 N ARG A 96 O THR A 148 SHEET 9 AA1 9 PHE A 119 LYS A 120 -1 O PHE A 119 N VAL A 95 SHEET 1 AA2 8 GLU A 21 GLN A 28 0 SHEET 2 AA2 8 CYS A 31 ILE A 38 -1 O GLN A 37 N GLU A 21 SHEET 3 AA2 8 VAL A 41 GLN A 47 -1 O LEU A 45 N TYR A 34 SHEET 4 AA2 8 LYS A 2 GLY A 7 1 N ILE A 5 O LEU A 46 SHEET 5 AA2 8 VAL A 70 GLY A 79 1 O VAL A 70 N GLY A 4 SHEET 6 AA2 8 PHE A 190 ASP A 198 1 O ASP A 198 N GLY A 79 SHEET 7 AA2 8 VAL A 89 HIS A 97 -1 N VAL A 90 O ARG A 194 SHEET 8 AA2 8 PHE A 119 LYS A 120 -1 O PHE A 119 N VAL A 95 SHEET 1 AA3 9 GLU B 21 GLN B 28 0 SHEET 2 AA3 9 CYS B 31 ILE B 38 -1 O GLN B 37 N GLU B 21 SHEET 3 AA3 9 VAL B 41 GLN B 47 -1 O LEU B 45 N TYR B 34 SHEET 4 AA3 9 LYS B 2 GLY B 7 1 N ILE B 5 O LEU B 46 SHEET 5 AA3 9 VAL B 70 GLY B 79 1 O VAL B 70 N GLY B 4 SHEET 6 AA3 9 VAL B 169 GLU B 173 -1 O VAL B 172 N GLY B 78 SHEET 7 AA3 9 ALA B 141 THR B 148 1 N LEU B 145 O VAL B 170 SHEET 8 AA3 9 VAL B 89 HIS B 97 1 N ARG B 96 O THR B 148 SHEET 9 AA3 9 PHE B 119 LYS B 120 -1 O PHE B 119 N VAL B 95 SHEET 1 AA4 8 GLU B 21 GLN B 28 0 SHEET 2 AA4 8 CYS B 31 ILE B 38 -1 O GLN B 37 N GLU B 21 SHEET 3 AA4 8 VAL B 41 GLN B 47 -1 O LEU B 45 N TYR B 34 SHEET 4 AA4 8 LYS B 2 GLY B 7 1 N ILE B 5 O LEU B 46 SHEET 5 AA4 8 VAL B 70 GLY B 79 1 O VAL B 70 N GLY B 4 SHEET 6 AA4 8 PHE B 190 ASP B 198 1 O ASP B 198 N GLY B 79 SHEET 7 AA4 8 VAL B 89 HIS B 97 -1 N VAL B 90 O ARG B 194 SHEET 8 AA4 8 PHE B 119 LYS B 120 -1 O PHE B 119 N VAL B 95
SITE 1 AC1 14 ILE A 50 SER A 76 ALA A 77 GLY A 78 SITE 2 AC1 14 ALA A 151 PHE A 152 ILE A 153 GLU A 173 SITE 3 AC1 14 MET A 174 GLU A 175 SER A 197 ASP A 198 SITE 4 AC1 14 PHE A 208 HOH A 453 SITE 1 AC2 7 GLN A 131 GLN A 135 HOH A 418 HOH A 419 SITE 2 AC2 7 HOH A 428 PRO B 167 SER B 168 SITE 1 AC3 14 ILE B 50 SER B 76 ALA B 77 GLY B 78 SITE 2 AC3 14 ALA B 151 PHE B 152 ILE B 153 GLU B 173 SITE 3 AC3 14 MET B 174 GLU B 175 SER B 197 ASP B 198 SITE 4 AC3 14 PHE B 208 HOH B 475
CRYST1 52.898 72.708 61.621 90.00 110.00 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.018904 0.000000 0.006880 0.00000
SCALE2 0.000000 0.013754 0.000000 0.00000
SCALE3 0.000000 0.000000 0.017270 0.00000