10 20 30 40 50 60 70 80 4WG5 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE/TRANSFERASE INHIBITOR 17-SEP-14 4WG5
TITLE CALCIUM-DEPENDENT PROTEIN KINASE 1 FROM TOXOPLASMA GONDII (TGCDPK1) IN TITLE 2 COMPLEX WITH INHIBITOR UW1647
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN-DOMAIN PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 30-507; COMPND 5 EC: 2.7.11.17; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 3 ORGANISM_TAXID: 5811; SOURCE 4 GENE: CDPK1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: AVA0421
KEYWDS SERINE/THREONINE PROTEIN KINASE, TRANSFERASE, CALCIUM-BINDING, ATP- KEYWDS 2 BINDING, BUMPED KINASE INHIBITOR, TRANSFERASE-TRANSFERASE INHIBITOR KEYWDS 3 COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR E.A.MERRITT
REVDAT 1 15-OCT-14 4WG5 0
JRNL AUTH E.A.MERRITT,D.J.MALY,K.K.OJO,Z.ZHANG,E.FAN,W.C.VAN VOORHIS JRNL TITL CALCIUM-DEPENDENT PROTEIN KINASE 1 FROM TOXOPLASMA GONDII JRNL TITL 2 (TGCDPK1) IN COMPLEX WITH INHIBITOR UW1647 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Z.ZHANG,K.K.OJO,R.VIDADALA,W.HUANG,J.A.GEIGER,S.SCHEELE, REMARK 1 AUTH 2 R.CHOI,M.C.REID,K.R.KEYLOUN,K.RIVAS,L.K.SIDDARAMAIAH, REMARK 1 AUTH 3 K.M.COMESS,K.P.ROBINSON,P.J.MERTA,L.KIFLE,W.G.HOL,M.PARSONS, REMARK 1 AUTH 4 E.A.MERRITT,D.J.MALY,C.L.VERLINDE,W.C.VAN VOORHIS,E.FAN REMARK 1 TITL POTENT AND SELECTIVE INHIBITORS OF CDPK1 FROM T. GONDII AND REMARK 1 TITL 2 C. PARVUM BASED ON A 5-AMINOPYRAZOLE-4-CARBOXAMIDE SCAFFOLD. REMARK 1 REF ACS MED.CHEM.LETT. V. 5 40 2014 REMARK 1 REFN ISSN 1948-5875 REMARK 1 PMID 24494061 REMARK 1 DOI 10.1021/ML400315S REMARK 1 REFERENCE 2 REMARK 1 AUTH K.K.OJO,E.T.LARSON,K.R.KEYLOUN,L.J.CASTANEDA,A.E.DEROCHER, REMARK 1 AUTH 2 K.K.INAMPUDI,J.E.KIM,T.L.ARAKAKI,R.C.MURPHY,L.ZHANG, REMARK 1 AUTH 3 A.J.NAPULI,D.J.MALY,C.L.VERLINDE,F.S.BUCKNER,M.PARSONS, REMARK 1 AUTH 4 W.G.HOL,E.A.MERRITT,W.C.VAN VOORHIS REMARK 1 TITL TOXOPLASMA GONDII CALCIUM-DEPENDENT PROTEIN KINASE 1 IS A REMARK 1 TITL 2 TARGET FOR SELECTIVE KINASE INHIBITORS. REMARK 1 REF NAT.STRUCT.MOL.BIOL. V. 17 602 2010 REMARK 1 REFN ESSN 1545-9985 REMARK 1 PMID 20436472 REMARK 1 DOI 10.1038/NSMB.1818 REMARK 1 REFERENCE 3 REMARK 1 AUTH E.T.LARSON,K.K.OJO,R.C.MURPHY,S.M.JOHNSON,Z.ZHANG,J.E.KIM, REMARK 1 AUTH 2 D.J.LEIBLY,A.M.FOX,M.C.REID,E.J.DALE,B.G.PERERA,J.KIM, REMARK 1 AUTH 3 S.N.HEWITT,W.G.HOL,C.L.VERLINDE,E.FAN,W.C.VAN VOORHIS, REMARK 1 AUTH 4 D.J.MALY,E.A.MERRITT REMARK 1 TITL MULTIPLE DETERMINANTS FOR SELECTIVE INHIBITION OF REMARK 1 TITL 2 APICOMPLEXAN CALCIUM-DEPENDENT PROTEIN KINASE CDPK1. REMARK 1 REF J.MED.CHEM. V. 55 2803 2012 REMARK 1 REFN ISSN 0022-2623 REMARK 1 PMID 22369268 REMARK 1 DOI 10.1021/JM201725V
REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 18391 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 936 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1303 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.3310 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3723 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 66 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.99000 REMARK 3 B22 (A**2) : -0.18000 REMARK 3 B33 (A**2) : 2.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.30000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.594 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.282 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.257 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.485 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3848 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3708 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5182 ; 1.834 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8571 ; 0.942 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 471 ; 6.728 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 183 ;37.914 ;24.973 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 742 ;19.161 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;19.184 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 570 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4310 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 851 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1866 ; 1.581 ; 1.916 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1865 ; 1.580 ; 1.916 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2334 ; 2.669 ; 2.869 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 44 A 86 REMARK 3 ORIGIN FOR THE GROUP (A): 17.5600 -21.2790 -8.5850 REMARK 3 T TENSOR REMARK 3 T11: 0.3057 T22: 0.1400 REMARK 3 T33: 0.1805 T12: 0.0267 REMARK 3 T13: -0.1263 T23: 0.0366 REMARK 3 L TENSOR REMARK 3 L11: 5.2922 L22: 10.1624 REMARK 3 L33: 4.5846 L12: 2.4475 REMARK 3 L13: 1.2593 L23: 2.0539 REMARK 3 S TENSOR REMARK 3 S11: -0.0974 S12: -0.0519 S13: 0.2229 REMARK 3 S21: -0.3130 S22: 0.0683 S23: 0.5887 REMARK 3 S31: -0.1713 S32: -0.1753 S33: 0.0292 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 87 A 211 REMARK 3 ORIGIN FOR THE GROUP (A): 23.7720 -21.3700 6.6140 REMARK 3 T TENSOR REMARK 3 T11: 0.2945 T22: 0.0533 REMARK 3 T33: 0.1562 T12: -0.0068 REMARK 3 T13: -0.0941 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 1.5663 L22: 2.7420 REMARK 3 L33: 4.4489 L12: -0.3861 REMARK 3 L13: 0.4495 L23: 0.4225 REMARK 3 S TENSOR REMARK 3 S11: 0.0095 S12: 0.0715 S13: 0.1137 REMARK 3 S21: -0.0639 S22: -0.0235 S23: 0.1731 REMARK 3 S31: 0.0042 S32: -0.1641 S33: 0.0140 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 212 A 313 REMARK 3 ORIGIN FOR THE GROUP (A): 26.3180 -14.0390 24.5040 REMARK 3 T TENSOR REMARK 3 T11: 0.3817 T22: 0.1049 REMARK 3 T33: 0.0288 T12: -0.0137 REMARK 3 T13: -0.0795 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 5.1799 L22: 5.5562 REMARK 3 L33: 3.2157 L12: -0.8594 REMARK 3 L13: -0.3267 L23: -0.3283 REMARK 3 S TENSOR REMARK 3 S11: -0.0599 S12: -0.4178 S13: 0.0916 REMARK 3 S21: 0.6359 S22: 0.0498 S23: 0.0580 REMARK 3 S31: 0.1386 S32: -0.1576 S33: 0.0101 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 314 A 372 REMARK 3 ORIGIN FOR THE GROUP (A): 8.6180 -8.5470 4.2490 REMARK 3 T TENSOR REMARK 3 T11: 0.2835 T22: 0.1656 REMARK 3 T33: 0.2957 T12: -0.0134 REMARK 3 T13: -0.0247 T23: -0.0354 REMARK 3 L TENSOR REMARK 3 L11: 1.7031 L22: 2.9989 REMARK 3 L33: 8.3712 L12: -0.1866 REMARK 3 L13: 0.6456 L23: -2.3903 REMARK 3 S TENSOR REMARK 3 S11: -0.0813 S12: -0.1325 S13: -0.1312 REMARK 3 S21: -0.3470 S22: -0.0276 S23: 0.0241 REMARK 3 S31: 0.4713 S32: -0.0636 S33: 0.1090 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 373 A 411 REMARK 3 ORIGIN FOR THE GROUP (A): 7.4640 -10.5110 -20.2210 REMARK 3 T TENSOR REMARK 3 T11: 0.8137 T22: 0.3764 REMARK 3 T33: 0.4069 T12: -0.0227 REMARK 3 T13: -0.0980 T23: -0.0721 REMARK 3 L TENSOR REMARK 3 L11: 12.7983 L22: 5.7553 REMARK 3 L33: 5.0155 L12: 1.0023 REMARK 3 L13: 2.3371 L23: -0.4080 REMARK 3 S TENSOR REMARK 3 S11: -0.0345 S12: 0.1780 S13: -0.0119 REMARK 3 S21: -0.2650 S22: -0.0741 S23: -0.1843 REMARK 3 S31: 0.0054 S32: 0.3466 S33: 0.1086 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 412 A 440 REMARK 3 ORIGIN FOR THE GROUP (A): -2.1220 -7.2860 -16.0990 REMARK 3 T TENSOR REMARK 3 T11: 0.8403 T22: 0.4982 REMARK 3 T33: 0.7277 T12: -0.0544 REMARK 3 T13: -0.1571 T23: -0.0958 REMARK 3 L TENSOR REMARK 3 L11: 1.5059 L22: 2.0355 REMARK 3 L33: 10.7592 L12: 1.4763 REMARK 3 L13: 0.2760 L23: 0.3995 REMARK 3 S TENSOR REMARK 3 S11: -0.0488 S12: 0.3028 S13: 0.1530 REMARK 3 S21: -0.3063 S22: -0.1025 S23: 0.5342 REMARK 3 S31: 0.2497 S32: -0.8959 S33: 0.1513 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 441 A 507 REMARK 3 ORIGIN FOR THE GROUP (A): 1.9340 2.4540 11.7240 REMARK 3 T TENSOR REMARK 3 T11: 0.2820 T22: 0.0875 REMARK 3 T33: 0.1668 T12: 0.0023 REMARK 3 T13: -0.0793 T23: -0.0333 REMARK 3 L TENSOR REMARK 3 L11: 8.4243 L22: 2.9834 REMARK 3 L33: 6.2205 L12: 1.5477 REMARK 3 L13: -1.9081 L23: -1.7815 REMARK 3 S TENSOR REMARK 3 S11: 0.0518 S12: -0.3623 S13: 0.5017 REMARK 3 S21: -0.0189 S22: 0.1054 S23: 0.0519 REMARK 3 S31: -0.3483 S32: 0.1136 S33: -0.1571 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED
REMARK 4 REMARK 4 4WG5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000203762.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 0.2.14 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19342 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 66.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.13800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 1.16500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG 3350, 250 MM AMMONIUM CITRATE, REMARK 280 2 MM EDTA, 5 MM DTT, 2 MM UW1647
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.47500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 24 REMARK 465 PRO A 25 REMARK 465 GLY A 26 REMARK 465 SER A 27 REMARK 465 MET A 28 REMARK 465 MET A 29 REMARK 465 ASP A 30 REMARK 465 HIS A 31 REMARK 465 LEU A 32 REMARK 465 HIS A 33 REMARK 465 ALA A 34 REMARK 465 THR A 35 REMARK 465 PRO A 36 REMARK 465 GLY A 37 REMARK 465 MET A 38 REMARK 465 PHE A 39 REMARK 465 VAL A 40 REMARK 465 GLN A 41 REMARK 465 HIS A 42 REMARK 465 SER A 43
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 391 CG CD CE NZ
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 373 OE1 GLU A 423 1.23 REMARK 500 OD1 ASP A 412 NZ LYS A 418 1.39 REMARK 500 N LEU A 375 O ILE A 422 1.58 REMARK 500 O LEU A 375 N ILE A 422 1.67 REMARK 500 OD1 ASP A 394 OG SER A 396 1.91 REMARK 500 CG ASP A 412 NZ LYS A 418 1.92 REMARK 500 OG SER A 186 OD1 ASP A 188 2.03 REMARK 500 O ARG A 145 O HOH A 739 2.07 REMARK 500 C GLY A 373 OE1 GLU A 423 2.09 REMARK 500 NE2 GLN A 89 O HOH A 737 2.11 REMARK 500 O HOH A 715 O HOH A 718 2.15 REMARK 500 OD2 ASP A 412 NZ LYS A 418 2.15 REMARK 500 NE ARG A 442 O HOH A 723 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 98 OG SER A 479 2645 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 217 CE1 TYR A 217 CZ -0.094 REMARK 500 TRP A 234 CE3 TRP A 234 CZ3 0.113 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 296 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 448 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 448 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 62 -7.26 72.43 REMARK 500 ASP A 120 -157.98 -126.47 REMARK 500 ARG A 173 -33.90 88.04 REMARK 500 ASP A 195 15.72 81.81 REMARK 500 GLN A 315 -55.57 -131.49 REMARK 500 VAL A 320 129.18 -179.58 REMARK 500 LEU A 323 77.66 -108.14 REMARK 500 GLN A 393 -9.27 85.66 REMARK 500 ASP A 415 -128.30 53.99 REMARK 500 ASP A 417 74.90 53.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 414 ASP A 415 149.29 REMARK 500 THR A 436 LEU A 437 -149.55 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UW3 A 601
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WG3 RELATED DB: PDB REMARK 900 RELATED ID: 4WG5 RELATED DB: PDB
DBREF 4WG5 A 30 507 UNP Q9BJF5 Q9BJF5_TOXGO 30 507
SEQADV 4WG5 GLY A 24 UNP Q9BJF5 EXPRESSION TAG SEQADV 4WG5 PRO A 25 UNP Q9BJF5 EXPRESSION TAG SEQADV 4WG5 GLY A 26 UNP Q9BJF5 EXPRESSION TAG SEQADV 4WG5 SER A 27 UNP Q9BJF5 EXPRESSION TAG SEQADV 4WG5 MET A 28 UNP Q9BJF5 EXPRESSION TAG SEQADV 4WG5 MET A 29 UNP Q9BJF5 EXPRESSION TAG
SEQRES 1 A 484 GLY PRO GLY SER MET MET ASP HIS LEU HIS ALA THR PRO SEQRES 2 A 484 GLY MET PHE VAL GLN HIS SER THR ALA ILE PHE SER ASP SEQRES 3 A 484 ARG TYR LYS GLY GLN ARG VAL LEU GLY LYS GLY SER PHE SEQRES 4 A 484 GLY GLU VAL ILE LEU CYS LYS ASP LYS ILE THR GLY GLN SEQRES 5 A 484 GLU CYS ALA VAL LYS VAL ILE SER LYS ARG GLN VAL LYS SEQRES 6 A 484 GLN LYS THR ASP LYS GLU SER LEU LEU ARG GLU VAL GLN SEQRES 7 A 484 LEU LEU LYS GLN LEU ASP HIS PRO ASN ILE MET LYS LEU SEQRES 8 A 484 TYR GLU PHE PHE GLU ASP LYS GLY TYR PHE TYR LEU VAL SEQRES 9 A 484 GLY GLU VAL TYR THR GLY GLY GLU LEU PHE ASP GLU ILE SEQRES 10 A 484 ILE SER ARG LYS ARG PHE SER GLU VAL ASP ALA ALA ARG SEQRES 11 A 484 ILE ILE ARG GLN VAL LEU SER GLY ILE THR TYR MET HIS SEQRES 12 A 484 LYS ASN LYS ILE VAL HIS ARG ASP LEU LYS PRO GLU ASN SEQRES 13 A 484 LEU LEU LEU GLU SER LYS SER LYS ASP ALA ASN ILE ARG SEQRES 14 A 484 ILE ILE ASP PHE GLY LEU SER THR HIS PHE GLU ALA SER SEQRES 15 A 484 LYS LYS MET LYS ASP LYS ILE GLY THR ALA TYR TYR ILE SEQRES 16 A 484 ALA PRO GLU VAL LEU HIS GLY THR TYR ASP GLU LYS CYS SEQRES 17 A 484 ASP VAL TRP SER THR GLY VAL ILE LEU TYR ILE LEU LEU SEQRES 18 A 484 SER GLY CYS PRO PRO PHE ASN GLY ALA ASN GLU TYR ASP SEQRES 19 A 484 ILE LEU LYS LYS VAL GLU LYS GLY LYS TYR THR PHE GLU SEQRES 20 A 484 LEU PRO GLN TRP LYS LYS VAL SER GLU SER ALA LYS ASP SEQRES 21 A 484 LEU ILE ARG LYS MET LEU THR TYR VAL PRO SER MET ARG SEQRES 22 A 484 ILE SER ALA ARG ASP ALA LEU ASP HIS GLU TRP ILE GLN SEQRES 23 A 484 THR TYR THR LYS GLU GLN ILE SER VAL ASP VAL PRO SER SEQRES 24 A 484 LEU ASP ASN ALA ILE LEU ASN ILE ARG GLN PHE GLN GLY SEQRES 25 A 484 THR GLN LYS LEU ALA GLN ALA ALA LEU LEU TYR MET GLY SEQRES 26 A 484 SER LYS LEU THR SER GLN ASP GLU THR LYS GLU LEU THR SEQRES 27 A 484 ALA ILE PHE HIS LYS MET ASP LYS ASN GLY ASP GLY GLN SEQRES 28 A 484 LEU ASP ARG ALA GLU LEU ILE GLU GLY TYR LYS GLU LEU SEQRES 29 A 484 MET ARG MET LYS GLY GLN ASP ALA SER MET LEU ASP ALA SEQRES 30 A 484 SER ALA VAL GLU HIS GLU VAL ASP GLN VAL LEU ASP ALA SEQRES 31 A 484 VAL ASP PHE ASP LYS ASN GLY TYR ILE GLU TYR SER GLU SEQRES 32 A 484 PHE VAL THR VAL ALA MET ASP ARG LYS THR LEU LEU SER SEQRES 33 A 484 ARG GLU ARG LEU GLU ARG ALA PHE ARG MET PHE ASP SER SEQRES 34 A 484 ASP ASN SER GLY LYS ILE SER SER THR GLU LEU ALA THR SEQRES 35 A 484 ILE PHE GLY VAL SER ASP VAL ASP SER GLU THR TRP LYS SEQRES 36 A 484 SER VAL LEU SER GLU VAL ASP LYS ASN ASN ASP GLY GLU SEQRES 37 A 484 VAL ASP PHE ASP GLU PHE GLN GLN MET LEU LEU LYS LEU SEQRES 38 A 484 CYS GLY ASN
HET UW3 A 601 30
HETNAM UW3 5-AMINO-3-[7-(CYCLOBUTYLOXY)QUINOLIN-3-YL]-1- HETNAM 2 UW3 CYCLOHEXYL-1H-PYRAZOLE-4-CARBOXAMIDE
FORMUL 2 UW3 C23 H27 N5 O2 FORMUL 3 HOH *66(H2 O)
HELIX 1 AA1 ILE A 46 ASP A 49 5 4 HELIX 2 AA2 ASP A 92 LEU A 106 1 15 HELIX 3 AA3 LEU A 136 ILE A 141 1 6 HELIX 4 AA4 SER A 147 ASN A 168 1 22 HELIX 5 AA5 LYS A 176 GLU A 178 5 3 HELIX 6 AA6 GLY A 197 HIS A 201 5 5 HELIX 7 AA7 LYS A 207 ILE A 212 1 6 HELIX 8 AA8 GLY A 213 ILE A 218 5 6 HELIX 9 AA9 ALA A 219 GLY A 225 1 7 HELIX 10 AB1 GLU A 229 GLY A 246 1 18 HELIX 11 AB2 ASN A 254 GLY A 265 1 12 HELIX 12 AB3 LEU A 271 LYS A 276 5 6 HELIX 13 AB4 SER A 278 LEU A 289 1 12 HELIX 14 AB5 SER A 298 ASP A 304 1 7 HELIX 15 AB6 HIS A 305 THR A 312 1 8 HELIX 16 AB7 GLN A 315 ASP A 319 5 5 HELIX 17 AB8 LEU A 323 ASP A 368 1 46 HELIX 18 AB9 ARG A 377 GLY A 392 1 16 HELIX 19 AC1 ASP A 399 VAL A 414 1 16 HELIX 20 AC2 TYR A 424 ASP A 451 1 28 HELIX 21 AC3 SER A 460 SER A 470 1 11 HELIX 22 AC4 ASP A 473 ASP A 485 1 13 HELIX 23 AC5 ASP A 493 LEU A 504 1 12
SHEET 1 AA1 5 TYR A 51 GLY A 60 0 SHEET 2 AA1 5 GLY A 63 ASP A 70 -1 O LEU A 67 N GLN A 54 SHEET 3 AA1 5 GLU A 76 SER A 83 -1 O CYS A 77 N CYS A 68 SHEET 4 AA1 5 TYR A 123 GLY A 128 -1 O LEU A 126 N LYS A 80 SHEET 5 AA1 5 LEU A 114 GLU A 119 -1 N TYR A 115 O VAL A 127 SHEET 1 AA2 3 GLY A 134 GLU A 135 0 SHEET 2 AA2 3 LEU A 180 LEU A 182 -1 O LEU A 182 N GLY A 134 SHEET 3 AA2 3 ILE A 191 ILE A 193 -1 O ARG A 192 N LEU A 181 SHEET 1 AA3 2 GLN A 374 ASP A 376 0 SHEET 2 AA3 2 TYR A 421 GLU A 423 -1 O ILE A 422 N LEU A 375 SHEET 1 AA4 2 ILE A 458 SER A 459 0 SHEET 2 AA4 2 GLU A 491 VAL A 492 -1 O VAL A 492 N ILE A 458
SITE 1 AC1 14 GLY A 58 VAL A 65 ALA A 78 LYS A 80 SITE 2 AC1 14 MET A 112 LEU A 126 GLU A 129 VAL A 130 SITE 3 AC1 14 TYR A 131 LEU A 181 ASP A 195 PHE A 196 SITE 4 AC1 14 LEU A 198 HOH A 746
CRYST1 48.190 72.950 67.880 90.00 102.48 90.00 P 1 21 1 2
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.020751 0.000000 0.004593 0.00000
SCALE2 0.000000 0.013708 0.000000 0.00000
SCALE3 0.000000 0.000000 0.015088 0.00000