10 20 30 40 50 60 70 80 4WEN - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL PROTEIN 10-SEP-14 4WEN
TITLE CO-COMPLEX STRUCTURE OF THE F4 FIMBRIAL ADHESIN FAEG VARIANT AC WITH TITLE 2 LLAMA SINGLE DOMAIN ANTIBODY V2
COMPND MOL_ID: 1; COMPND 2 MOLECULE: K88 FIMBRIAL PROTEIN AC; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 20-263; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ANTI-F4+ETEC BACTERIA VHH VARIABLE REGION; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: FAEG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PDEST14; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 11 ORGANISM_COMMON: LLAMA; SOURCE 12 ORGANISM_TAXID: 9844; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID
KEYWDS COMPLEX, ADHESIN, LLAMA SINGLE DOMAIN ANTIBODY, NANOBODY, STRUCTURAL KEYWDS 2 PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR K.MOONENS,I.VAN DEN BROECK,E.PARDON,M.DE KERPEL,H.REMAUT,H.DE GREVE
REVDAT 3 15-APR-15 4WEN 1 JRNL REVDAT 2 11-FEB-15 4WEN 1 JRNL REVDAT 1 04-FEB-15 4WEN 0
JRNL AUTH K.MOONENS,I.VAN DEN BROECK,E.OKELLO,E.PARDON,M.DE KERPEL, JRNL AUTH 2 H.REMAUT,H.DE GREVE JRNL TITL STRUCTURAL INSIGHT IN THE INHIBITION OF ADHERENCE OF F4 JRNL TITL 2 FIMBRIAE PRODUCING ENTEROTOXIGENIC ESCHERICHIA COLI BY LLAMA JRNL TITL 3 SINGLE DOMAIN ANTIBODIES. JRNL REF VET. RES. V. 46 14 2015 JRNL REFN ISSN 1297-9716 JRNL PMID 25828907 JRNL DOI 10.1186/S13567-015-0151-X
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH V.VIRDI,A.CODDENS,S.DE BUCK,S.MILLET,B.M.GODDEERIS,E.COX, REMARK 1 AUTH 2 H.DE GREVE,A.DEPICKER REMARK 1 TITL ORALLY FED SEEDS PRODUCING DESIGNER IGAS PROTECT WEANED REMARK 1 TITL 2 PIGLETS AGAINST ENTEROTOXIGENIC ESCHERICHIA COLI INFECTION. REMARK 1 REF PROC. NATL. ACAD. SCI. V. 110 11809 2013 REMARK 1 REF 2 U.S.A. REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 23801763 REMARK 1 DOI 10.1073/PNAS.1301975110
REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 34871 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1837 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2360 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.3600 REMARK 3 BIN FREE R VALUE SET COUNT : 108 REMARK 3 BIN FREE R VALUE : 0.3600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2749 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 105 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.38000 REMARK 3 B22 (A**2) : -1.38000 REMARK 3 B33 (A**2) : 4.49000 REMARK 3 B12 (A**2) : -0.69000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.131 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.867 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2799 ; 0.020 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3799 ; 2.106 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 372 ; 7.578 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;36.104 ;24.537 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 441 ;16.240 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;17.857 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 442 ; 0.158 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2091 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1494 ; 2.464 ; 2.611 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1861 ; 3.463 ; 3.887 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1304 ; 3.374 ; 2.881 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4138 ; 7.153 ;22.575 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 283 REMARK 3 ORIGIN FOR THE GROUP (A): 51.6249 -17.2931 7.0392 REMARK 3 T TENSOR REMARK 3 T11: 0.1795 T22: 0.1304 REMARK 3 T33: 0.0556 T12: -0.0753 REMARK 3 T13: 0.0757 T23: -0.0701 REMARK 3 L TENSOR REMARK 3 L11: 5.0440 L22: 3.2060 REMARK 3 L33: 1.7872 L12: 2.5445 REMARK 3 L13: 1.7751 L23: 1.1559 REMARK 3 S TENSOR REMARK 3 S11: -0.3347 S12: 0.4247 S13: -0.1368 REMARK 3 S21: -0.4454 S22: 0.1934 S23: -0.0545 REMARK 3 S31: -0.0157 S32: -0.1779 S33: 0.1413 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 801 B 921 REMARK 3 ORIGIN FOR THE GROUP (A): 51.0313 -37.9600 23.3211 REMARK 3 T TENSOR REMARK 3 T11: 0.1709 T22: 0.0550 REMARK 3 T33: 0.3172 T12: -0.0514 REMARK 3 T13: -0.0241 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 3.5349 L22: 5.3617 REMARK 3 L33: 3.6253 L12: 1.7480 REMARK 3 L13: -0.9951 L23: -0.9625 REMARK 3 S TENSOR REMARK 3 S11: 0.1303 S12: -0.3620 S13: -0.3232 REMARK 3 S21: 0.2804 S22: -0.1737 S23: -0.7778 REMARK 3 S31: 0.2563 S32: 0.0957 S33: 0.0434 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT
REMARK 4 REMARK 4 4WEN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000203672.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36784 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 47.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 20.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 19.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3HLR REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE PH 4.6, 200 MM REMARK 280 AMMONIUM SULFATE, 25 % W/V PEG 4000, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 316 LIES ON A SPECIAL POSITION.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TRP A 9 REMARK 465 MET A 10 REMARK 465 THR A 11 REMARK 465 GLY A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 ASP A 19 REMARK 465 ASP A 20 REMARK 465 TYR A 21 REMARK 465 PRO A 72 REMARK 465 VAL A 73 REMARK 465 THR A 74 REMARK 465 GLY A 75 REMARK 465 GLY A 76 REMARK 465 ASP A 99 REMARK 465 GLY A 100 REMARK 465 GLU A 101 REMARK 465 THR A 102 REMARK 465 HIS B 922 REMARK 465 HIS B 923 REMARK 465 HIS B 924 REMARK 465 HIS B 925 REMARK 465 HIS B 926 REMARK 465 HIS B 927
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 22 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 23 CG CD OE1 NE2 REMARK 470 GLN A 266 CG CD OE1 NE2 REMARK 470 GLN B 801 CG CD OE1 NE2 REMARK 470 GLN B 803 CG CD OE1 NE2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 308 O HOH A 308 5556 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 212 CD ARG A 212 NE -0.107 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 153 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 212 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 78 52.52 26.04 REMARK 500 SER A 184 -158.76 -93.29 REMARK 500 MET A 215 -5.93 72.84 REMARK 500 ASP A 263 68.88 38.80 REMARK 500 LYS A 265 -35.59 65.66 REMARK 500 ASN B 832 -92.65 -111.57 REMARK 500 LEU B 904 44.73 -88.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 32 LEU A 33 -138.79 REMARK 500 ASN A 103 LYS A 104 -148.56 REMARK 500 REMARK 500 REMARK: NULL
DBREF 4WEN A 19 262 UNP L7XD53 L7XD53_ECOLX 20 263 DBREF 4WEN B 801 921 UNP R9VYW2 R9VYW2_LAMGL 1 121
SEQADV 4WEN TRP A 9 UNP L7XD53 EXPRESSION TAG SEQADV 4WEN MET A 10 UNP L7XD53 EXPRESSION TAG SEQADV 4WEN THR A 11 UNP L7XD53 EXPRESSION TAG SEQADV 4WEN GLY A 12 UNP L7XD53 EXPRESSION TAG SEQADV 4WEN HIS A 13 UNP L7XD53 EXPRESSION TAG SEQADV 4WEN HIS A 14 UNP L7XD53 EXPRESSION TAG SEQADV 4WEN HIS A 15 UNP L7XD53 EXPRESSION TAG SEQADV 4WEN HIS A 16 UNP L7XD53 EXPRESSION TAG SEQADV 4WEN HIS A 17 UNP L7XD53 EXPRESSION TAG SEQADV 4WEN HIS A 18 UNP L7XD53 EXPRESSION TAG SEQADV 4WEN ASP A 263 UNP L7XD53 EXPRESSION TAG SEQADV 4WEN ASN A 264 UNP L7XD53 EXPRESSION TAG SEQADV 4WEN LYS A 265 UNP L7XD53 EXPRESSION TAG SEQADV 4WEN GLN A 266 UNP L7XD53 EXPRESSION TAG SEQADV 4WEN MET A 267 UNP L7XD53 EXPRESSION TAG SEQADV 4WEN THR A 268 UNP L7XD53 EXPRESSION TAG SEQADV 4WEN GLY A 269 UNP L7XD53 EXPRESSION TAG SEQADV 4WEN ASP A 270 UNP L7XD53 EXPRESSION TAG SEQADV 4WEN PHE A 271 UNP L7XD53 EXPRESSION TAG SEQADV 4WEN ASN A 272 UNP L7XD53 EXPRESSION TAG SEQADV 4WEN GLY A 273 UNP L7XD53 EXPRESSION TAG SEQADV 4WEN SER A 274 UNP L7XD53 EXPRESSION TAG SEQADV 4WEN VAL A 275 UNP L7XD53 EXPRESSION TAG SEQADV 4WEN ASP A 276 UNP L7XD53 EXPRESSION TAG SEQADV 4WEN ILE A 277 UNP L7XD53 EXPRESSION TAG SEQADV 4WEN GLY A 278 UNP L7XD53 EXPRESSION TAG SEQADV 4WEN GLY A 279 UNP L7XD53 EXPRESSION TAG SEQADV 4WEN SER A 280 UNP L7XD53 EXPRESSION TAG SEQADV 4WEN ILE A 281 UNP L7XD53 EXPRESSION TAG SEQADV 4WEN THR A 282 UNP L7XD53 EXPRESSION TAG SEQADV 4WEN ALA A 283 UNP L7XD53 EXPRESSION TAG SEQADV 4WEN HIS B 922 UNP R9VYW2 EXPRESSION TAG SEQADV 4WEN HIS B 923 UNP R9VYW2 EXPRESSION TAG SEQADV 4WEN HIS B 924 UNP R9VYW2 EXPRESSION TAG SEQADV 4WEN HIS B 925 UNP R9VYW2 EXPRESSION TAG SEQADV 4WEN HIS B 926 UNP R9VYW2 EXPRESSION TAG SEQADV 4WEN HIS B 927 UNP R9VYW2 EXPRESSION TAG
SEQRES 1 A 275 TRP MET THR GLY HIS HIS HIS HIS HIS HIS ASP ASP TYR SEQRES 2 A 275 ARG GLN LYS TRP GLU TRP LYS VAL GLY THR GLY LEU ASN SEQRES 3 A 275 GLY PHE GLY ASN VAL LEU ASN ASP LEU THR ASN GLY GLY SEQRES 4 A 275 THR LYS LEU THR ILE THR VAL THR GLY ASN LYS PRO ILE SEQRES 5 A 275 LEU LEU GLY ARG THR LYS GLU ALA PHE ALA THR PRO VAL SEQRES 6 A 275 THR GLY GLY VAL ASP GLY ILE PRO HIS ILE ALA PHE THR SEQRES 7 A 275 ASP TYR GLU GLY ALA SER VAL VAL LEU ARG ASN PRO ASP SEQRES 8 A 275 GLY GLU THR ASN LYS LYS GLY LEU ALA TYR PHE VAL LEU SEQRES 9 A 275 PRO MET LYS ASN ALA GLU GLY THR LYS VAL GLY SER VAL SEQRES 10 A 275 LYS VAL ASN ALA SER TYR ALA GLY VAL LEU GLY ARG GLY SEQRES 11 A 275 GLY VAL THR SER ALA ASP GLY GLU LEU LEU SER LEU PHE SEQRES 12 A 275 ALA ASP GLY LEU SER SER ILE PHE TYR GLY GLY LEU PRO SEQRES 13 A 275 ARG GLY SER GLU LEU SER ALA GLY SER ALA ALA ALA ALA SEQRES 14 A 275 ARG THR LYS LEU PHE GLY SER LEU SER ARG ASN ASP ILE SEQRES 15 A 275 LEU GLY GLN ILE GLN ARG VAL ASN ALA ASN ILE THR SER SEQRES 16 A 275 LEU VAL ASP VAL ALA GLY SER TYR ARG GLU ASN MET GLU SEQRES 17 A 275 TYR THR ASP GLY THR VAL VAL SER ALA ALA TYR ALA LEU SEQRES 18 A 275 GLY ILE ALA ASN GLY GLN THR ILE GLU ALA THR PHE ASN SEQRES 19 A 275 GLN ALA VAL THR THR SER THR GLN TRP SER ALA PRO LEU SEQRES 20 A 275 ASN VAL ALA ILE THR TYR TYR ASP ASN LYS GLN MET THR SEQRES 21 A 275 GLY ASP PHE ASN GLY SER VAL ASP ILE GLY GLY SER ILE SEQRES 22 A 275 THR ALA SEQRES 1 B 127 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 127 PRO GLY GLY SER LEU ARG LEU SER CYS THR ALA SER GLY SEQRES 3 B 127 SER ILE SER SER ILE ASN ALA MET GLY TRP TYR ARG GLN SEQRES 4 B 127 ALA PRO GLY SER LYS ARG GLU PHE VAL ALA HIS ILE THR SEQRES 5 B 127 ASN THR GLY VAL THR GLU PHE ALA ASP SER VAL LYS GLY SEQRES 6 B 127 ARG PHE THR ILE SER ARG ASP ASN ALA LYS THR THR VAL SEQRES 7 B 127 ASP LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR ALA SEQRES 8 B 127 VAL TYR TYR CYS ALA ALA THR ASP TRP GLY THR LEU LEU SEQRES 9 B 127 ILE LYS GLY ILE ASP HIS TRP GLY LYS GLY THR GLN VAL SEQRES 10 B 127 THR VAL SER SER HIS HIS HIS HIS HIS HIS
FORMUL 3 HOH *105(H2 O)
HELIX 1 AA1 ASN A 41 LEU A 43 5 3 HELIX 2 AA2 ALA A 171 GLY A 183 1 13 HELIX 3 AA3 SER A 186 ARG A 196 1 11 HELIX 4 AA4 ASP B 861 LYS B 864 5 4 HELIX 5 AA5 LYS B 886 THR B 890 5 5
SHEET 1 AA1 6 TRP A 25 VAL A 29 0 SHEET 2 AA1 6 LYS A 58 THR A 65 -1 O LEU A 62 N LYS A 28 SHEET 3 AA1 6 VAL A 222 ILE A 231 -1 O ILE A 231 N LYS A 58 SHEET 4 AA1 6 LYS A 121 GLY A 138 -1 N GLY A 136 O SER A 224 SHEET 5 AA1 6 THR A 236 PHE A 241 -1 O THR A 240 N SER A 124 SHEET 6 AA1 6 LYS A 49 THR A 53 -1 N LEU A 50 O ALA A 239 SHEET 1 AA2 7 PHE A 36 VAL A 39 0 SHEET 2 AA2 7 GLY A 278 THR A 282 1 O SER A 280 N PHE A 36 SHEET 3 AA2 7 THR A 249 SER A 252 -1 N TRP A 251 O GLY A 279 SHEET 4 AA2 7 LEU A 107 ASN A 116 -1 N LYS A 115 O SER A 252 SHEET 5 AA2 7 LYS A 121 GLY A 138 -1 O VAL A 127 N PHE A 110 SHEET 6 AA2 7 ASP A 144 SER A 149 -1 O LEU A 148 N LEU A 135 SHEET 7 AA2 7 SER A 203 ASP A 206 1 O VAL A 205 N LEU A 147 SHEET 1 AA3 4 SER A 92 VAL A 93 0 SHEET 2 AA3 4 PRO A 81 THR A 86 -1 N PHE A 85 O VAL A 93 SHEET 3 AA3 4 LEU A 255 TYR A 261 -1 O ASN A 256 N THR A 86 SHEET 4 AA3 4 PHE A 271 VAL A 275 -1 O VAL A 275 N LEU A 255 SHEET 1 AA4 4 GLN B 803 SER B 807 0 SHEET 2 AA4 4 LEU B 818 SER B 825 -1 O THR B 823 N GLN B 805 SHEET 3 AA4 4 THR B 877 MET B 882 -1 O MET B 882 N LEU B 818 SHEET 4 AA4 4 PHE B 867 ASP B 872 -1 N ASP B 872 O THR B 877 SHEET 1 AA5 6 GLY B 810 VAL B 812 0 SHEET 2 AA5 6 THR B 915 VAL B 919 1 O THR B 918 N VAL B 812 SHEET 3 AA5 6 ALA B 891 ALA B 897 -1 N TYR B 893 O THR B 915 SHEET 4 AA5 6 MET B 834 GLN B 839 -1 N TYR B 837 O TYR B 894 SHEET 5 AA5 6 GLU B 846 ILE B 851 -1 O ILE B 851 N MET B 834 SHEET 6 AA5 6 THR B 857 PHE B 859 -1 O GLU B 858 N HIS B 850 SHEET 1 AA6 4 GLY B 810 VAL B 812 0 SHEET 2 AA6 4 THR B 915 VAL B 919 1 O THR B 918 N VAL B 812 SHEET 3 AA6 4 ALA B 891 ALA B 897 -1 N TYR B 893 O THR B 915 SHEET 4 AA6 4 HIS B 910 TRP B 911 -1 O HIS B 910 N ALA B 897
SSBOND 1 CYS B 822 CYS B 895 1555 1555 2.04
CRYST1 145.833 145.833 37.875 90.00 90.00 120.00 P 3 2 1 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.006857 0.003959 0.000000 0.00000
SCALE2 0.000000 0.007918 0.000000 0.00000
SCALE3 0.000000 0.000000 0.026403 0.00000