10 20 30 40 50 60 70 80 4OVW - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 06-OCT-97 4OVW
TITLE ENDOGLUCANASE I COMPLEXED WITH EPOXYBUTYL CELLOBIOSE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOGLUCANASE I; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.2.1.4
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FUSARIUM OXYSPORUM; SOURCE 3 ORGANISM_TAXID: 5507
KEYWDS GLYCOSYL HYDROLASE, ENDOGLUCANASE I, COMPLEX WITH EPOXYBUTYL KEYWDS 2 CELLOBIOSE, GLYCOSYLATED PROTEIN, HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR G.J.DAVIES,M.SCHULEIN
REVDAT 3 13-JUL-11 4OVW 1 VERSN REVDAT 2 24-FEB-09 4OVW 1 VERSN REVDAT 1 08-APR-98 4OVW 0
JRNL AUTH G.SULZENBACHER,M.SCHULEIN,G.J.DAVIES JRNL TITL STRUCTURE OF THE ENDOGLUCANASE I FROM FUSARIUM OXYSPORUM: JRNL TITL 2 NATIVE, CELLOBIOSE, AND 3,4-EPOXYBUTYL JRNL TITL 3 BETA-D-CELLOBIOSIDE-INHIBITED FORMS, AT 2.3 A RESOLUTION. JRNL REF BIOCHEMISTRY V. 36 5902 1997 JRNL REFN ISSN 0006-2960 JRNL PMID 9153432 JRNL DOI 10.1021/BI962963+
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.SULZENBACHER,H.DRIGUEZ,B.HENRISSAT,M.SCHULEIN,G.J.DAVIES REMARK 1 TITL STRUCTURE OF THE FUSARIUM OXYSPORUM ENDOGLUCANASE I WITH A REMARK 1 TITL 2 NONHYDROLYZABLE SUBSTRATE ANALOGUE: SUBSTRATE DISTORTION REMARK 1 TITL 3 GIVES RISE TO THE PREFERRED AXIAL ORIENTATION FOR THE REMARK 1 TITL 4 LEAVING GROUP REMARK 1 REF BIOCHEMISTRY V. 35 15280 1996 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH P.O.SHEPPARD,F.J.GRANT,P.J.OORT,C.A.SPRECHER,D.C.FOSTER, REMARK 1 AUTH 2 F.S.HAGEN,A.UPSHALL,G.L.MCKNIGHT,P.J.O'HARA REMARK 1 TITL THE USE OF CONSERVED CELLULASE FAMILY-SPECIFIC SEQUENCES TO REMARK 1 TITL 2 CLONE CELLULASE HOMOLOGUE CDNAS FROM FUSARIUM OXYSPORUM REMARK 1 REF GENE V. 150 163 1994 REMARK 1 REFN ISSN 0378-1119
REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1587 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6060 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 699 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.013 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.042 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.043 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.146 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.179 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.258 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : 0.210 ; 0.300 REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 4.700 ; 7.000 REMARK 3 STAGGERED (DEGREES) : 20.300; 20.000 REMARK 3 TRANSVERSE (DEGREES) : 20.200; 25.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.887 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.689 ; 4.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.603 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.656 ; 5.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: X-PLOR 3.1 (BRUNGER) ALSO WAS USED.
REMARK 4 REMARK 4 4OVW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : JUL-94 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-C REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 18.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 47.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.97 REMARK 200 R MERGE FOR SHELL (I) : 0.20100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NATIVE STRUCTURE (2 MOLECULES IN ASYMMETRIC UNIT) REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22 % MEPEG 2K, 0.2 M MAGNESIUM REMARK 280 CHLORIDE, PH 7.5 FOR 0.1 M TRIS. METHOD: HANGING DROP VAPOR REMARK 280 DIFFUSION. THE PROTEIN SAMPLE HAD PREVIOUSLY BEEN INHIBITED WITH REMARK 280 8.25 MMOL 3,4-EPOXYBUTYL B-D-CELLOBIOSIDE FOR 3HRS., VAPOR REMARK 280 DIFFUSION - HANGING DROP
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.31000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 400 REMARK 400 COMPOUND REMARK 400 THE C-TERMINAL RESIDUES ARE EITHER DISORDERED OR ABSENT REMARK 400 (C-TERMINAL DEGRADATION). MASS SPECTROMETRY ANALYSIS SHOWS REMARK 400 THAT A MIXTURE OF VARIOUS C-TERMINAL DEGRADATIONS IS REMARK 400 PRESENT.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 401 REMARK 465 ALA A 402 REMARK 465 PRO A 403 REMARK 465 ALA A 404 REMARK 465 TYR A 405 REMARK 465 PRO A 406 REMARK 465 GLY A 407 REMARK 465 PRO A 408 REMARK 465 HIS A 409 REMARK 465 ARG A 410 REMARK 465 LEU A 411 REMARK 465 LYS B 401 REMARK 465 ALA B 402 REMARK 465 PRO B 403 REMARK 465 ALA B 404 REMARK 465 TYR B 405 REMARK 465 PRO B 406 REMARK 465 GLY B 407 REMARK 465 PRO B 408 REMARK 465 HIS B 409 REMARK 465 ARG B 410 REMARK 465 LEU B 411
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 197 CB CG CD OE1 OE2 REMARK 470 GLU B 197 CB CG CD OE1 OE2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 995 O HOH A 1086 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 9 CG - CD - OE1 ANGL. DEV. = 12.5 DEGREES REMARK 500 ARG A 17 CD - NE - CZ ANGL. DEV. = 11.0 DEGREES REMARK 500 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 17 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 CYS A 18 CA - CB - SG ANGL. DEV. = 7.2 DEGREES REMARK 500 GLN A 27 N - CA - CB ANGL. DEV. = 11.9 DEGREES REMARK 500 ASP A 34 CB - CG - OD1 ANGL. DEV. = 9.4 DEGREES REMARK 500 ARG A 41 CB - CA - C ANGL. DEV. = -12.2 DEGREES REMARK 500 ASP A 50 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 62 CB - CG - OD1 ANGL. DEV. = 9.2 DEGREES REMARK 500 ASP A 62 CB - CG - OD2 ANGL. DEV. = -8.1 DEGREES REMARK 500 LYS A 68 CB - CG - CD ANGL. DEV. = 19.6 DEGREES REMARK 500 LYS A 68 CG - CD - CE ANGL. DEV. = 20.2 DEGREES REMARK 500 ARG A 93 CD - NE - CZ ANGL. DEV. = 11.5 DEGREES REMARK 500 ARG A 93 NE - CZ - NH2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASN A 113 CB - CG - OD1 ANGL. DEV. = -12.1 DEGREES REMARK 500 TYR A 117 CB - CG - CD2 ANGL. DEV. = -4.4 DEGREES REMARK 500 TYR A 117 CB - CG - CD1 ANGL. DEV. = 4.7 DEGREES REMARK 500 GLU A 118 OE1 - CD - OE2 ANGL. DEV. = -9.5 DEGREES REMARK 500 GLU A 132 OE1 - CD - OE2 ANGL. DEV. = -8.8 DEGREES REMARK 500 ARG A 159 CD - NE - CZ ANGL. DEV. = 35.4 DEGREES REMARK 500 ARG A 159 NE - CZ - NH1 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG A 159 NE - CZ - NH2 ANGL. DEV. = 6.1 DEGREES REMARK 500 CYS A 172 CA - CB - SG ANGL. DEV. = 10.6 DEGREES REMARK 500 TYR A 177 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 CYS A 194 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 CYS A 195 CA - CB - SG ANGL. DEV. = 6.9 DEGREES REMARK 500 ASP A 199 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 THR A 208 CA - CB - CG2 ANGL. DEV. = -10.0 DEGREES REMARK 500 ARG A 245 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 245 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ASP A 250 CB - CG - OD1 ANGL. DEV. = 7.8 DEGREES REMARK 500 TYR A 258 CB - CG - CD2 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG A 264 CD - NE - CZ ANGL. DEV. = 12.1 DEGREES REMARK 500 ASP A 279 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 GLU A 282 OE1 - CD - OE2 ANGL. DEV. = -7.6 DEGREES REMARK 500 GLU A 282 CG - CD - OE1 ANGL. DEV. = 12.1 DEGREES REMARK 500 TYR A 323 CB - CG - CD1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 338 NE - CZ - NH1 ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG A 338 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 VAL A 346 CB - CA - C ANGL. DEV. = -13.1 DEGREES REMARK 500 ASP A 352 CB - CG - OD1 ANGL. DEV. = 8.9 DEGREES REMARK 500 ASP A 358 CB - CG - OD1 ANGL. DEV. = 7.9 DEGREES REMARK 500 ASP A 366 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 390 CD - NE - CZ ANGL. DEV. = 13.9 DEGREES REMARK 500 ARG A 390 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 390 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 GLN B 9 OE1 - CD - NE2 ANGL. DEV. = -16.2 DEGREES REMARK 500 GLN B 9 CG - CD - OE1 ANGL. DEV. = 19.6 DEGREES REMARK 500 ARG B 17 NE - CZ - NH1 ANGL. DEV. = 6.6 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 87 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 4 -167.18 -76.42 REMARK 500 SER A 88 106.81 -165.71 REMARK 500 SER A 104 65.96 31.55 REMARK 500 LYS A 114 -1.17 69.52 REMARK 500 ALA A 211 111.01 -163.14 REMARK 500 VAL A 248 77.44 -117.20 REMARK 500 SER A 399 151.85 165.57 REMARK 500 ASP B 4 -163.12 -77.89 REMARK 500 SER B 104 67.99 31.66 REMARK 500 ALA B 211 111.74 -164.26 REMARK 500 VAL B 248 76.69 -112.71 REMARK 500 ASP B 366 -163.87 -74.08 REMARK 500 SER B 399 155.25 177.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PCA A 1 -17.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 THR B 58 24.2 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 952 DISTANCE = 5.27 ANGSTROMS REMARK 525 HOH B 961 DISTANCE = 5.47 ANGSTROMS REMARK 525 HOH B1067 DISTANCE = 5.29 ANGSTROMS REMARK 525 HOH B1130 DISTANCE = 6.16 ANGSTROMS
REMARK 600 REMARK 600 HETEROGEN REMARK 600 THE CATALYTIC NUCLEOPHILE GLU 197 IS COVALENTLY REMARK 600 LABELLED WITH THE EPOXIDE REAGENT. FOR EASE OF REFINEMENT REMARK 600 SOME OF THE ATOMS OF GLU 197 ARE NOW TREATED AS LIGAND REMARK 600 ATOMS IN THE "INH" MOIETY. THIS LIGAND BINDS AS BOTH R REMARK 600 AND S STEREOISOMERS WHICH HAVE BEEN MODELLED WITH REMARK 600 OCCUPANCIES OF 0.7 AND 0.3, RESPECTIVELY.
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG B 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IN1 A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IN1 B 801
DBREF 4OVW A 2 411 UNP P46237 GUNC_FUSOX 20 429 DBREF 4OVW B 2 411 UNP P46237 GUNC_FUSOX 20 429
SEQRES 1 A 411 PCA THR PRO ASP LYS ALA LYS GLU GLN HIS PRO LYS LEU SEQRES 2 A 411 GLU THR TYR ARG CYS THR LYS ALA SER GLY CYS LYS LYS SEQRES 3 A 411 GLN THR ASN TYR ILE VAL ALA ASP ALA GLY ILE HIS GLY SEQRES 4 A 411 ILE ARG GLN LYS ASN GLY ALA GLY CYS GLY ASP TRP GLY SEQRES 5 A 411 GLN LYS PRO ASN ALA THR ALA CYS PRO ASP GLU ALA SER SEQRES 6 A 411 CYS ALA LYS ASN CYS ILE LEU SER GLY MET ASP SER ASN SEQRES 7 A 411 ALA TYR LYS ASN ALA GLY ILE THR THR SER GLY ASN LYS SEQRES 8 A 411 LEU ARG LEU GLN GLN LEU ILE ASN ASN GLN LEU VAL SER SEQRES 9 A 411 PRO ARG VAL TYR LEU LEU GLU GLU ASN LYS LYS LYS TYR SEQRES 10 A 411 GLU MET LEU HIS LEU THR GLY THR GLU PHE SER PHE ASP SEQRES 11 A 411 VAL GLU MET GLU LYS LEU PRO CYS GLY MET ASN GLY ALA SEQRES 12 A 411 LEU TYR LEU SER GLU MET PRO GLN ASP GLY GLY LYS SER SEQRES 13 A 411 THR SER ARG ASN SER LYS ALA GLY ALA TYR TYR GLY ALA SEQRES 14 A 411 GLY TYR CYS ASP ALA GLN CYS TYR VAL THR PRO PHE ILE SEQRES 15 A 411 ASN GLY VAL GLY ASN ILE LYS GLY GLN GLY VAL CYS CYS SEQRES 16 A 411 ASN GLU LEU ASP ILE TRP GLU ALA ASN SER ARG ALA THR SEQRES 17 A 411 HIS ILE ALA PRO HIS PRO CYS SER LYS PRO GLY LEU TYR SEQRES 18 A 411 GLY CYS THR GLY ASP GLU CYS GLY SER SER GLY ILE CYS SEQRES 19 A 411 ASP LYS ALA GLY CYS GLY TRP ASN HIS ASN ARG ILE ASN SEQRES 20 A 411 VAL THR ASP PHE TYR GLY ARG GLY LYS GLN TYR LYS VAL SEQRES 21 A 411 ASP SER THR ARG LYS PHE THR VAL THR SER GLN PHE VAL SEQRES 22 A 411 ALA ASN LYS GLN GLY ASP LEU ILE GLU LEU HIS ARG HIS SEQRES 23 A 411 TYR ILE GLN ASP ASN LYS VAL ILE GLU SER ALA VAL VAL SEQRES 24 A 411 ASN ILE SER GLY PRO PRO LYS ILE ASN PHE ILE ASN ASP SEQRES 25 A 411 LYS TYR CYS ALA ALA THR GLY ALA ASN GLU TYR MET ARG SEQRES 26 A 411 LEU GLY GLY THR LYS GLN MET GLY ASP ALA MET SER ARG SEQRES 27 A 411 GLY MET VAL LEU ALA MET SER VAL TRP TRP SER GLU GLY SEQRES 28 A 411 ASP PHE MET ALA TRP LEU ASP GLN GLY VAL ALA GLY PRO SEQRES 29 A 411 CYS ASP ALA THR GLU GLY ASP PRO LYS ASN ILE VAL LYS SEQRES 30 A 411 VAL GLN PRO ASN PRO GLU VAL THR PHE SER ASN ILE ARG SEQRES 31 A 411 ILE GLY GLU ILE GLY SER THR SER SER VAL LYS ALA PRO SEQRES 32 A 411 ALA TYR PRO GLY PRO HIS ARG LEU SEQRES 1 B 411 PCA THR PRO ASP LYS ALA LYS GLU GLN HIS PRO LYS LEU SEQRES 2 B 411 GLU THR TYR ARG CYS THR LYS ALA SER GLY CYS LYS LYS SEQRES 3 B 411 GLN THR ASN TYR ILE VAL ALA ASP ALA GLY ILE HIS GLY SEQRES 4 B 411 ILE ARG GLN LYS ASN GLY ALA GLY CYS GLY ASP TRP GLY SEQRES 5 B 411 GLN LYS PRO ASN ALA THR ALA CYS PRO ASP GLU ALA SER SEQRES 6 B 411 CYS ALA LYS ASN CYS ILE LEU SER GLY MET ASP SER ASN SEQRES 7 B 411 ALA TYR LYS ASN ALA GLY ILE THR THR SER GLY ASN LYS SEQRES 8 B 411 LEU ARG LEU GLN GLN LEU ILE ASN ASN GLN LEU VAL SER SEQRES 9 B 411 PRO ARG VAL TYR LEU LEU GLU GLU ASN LYS LYS LYS TYR SEQRES 10 B 411 GLU MET LEU HIS LEU THR GLY THR GLU PHE SER PHE ASP SEQRES 11 B 411 VAL GLU MET GLU LYS LEU PRO CYS GLY MET ASN GLY ALA SEQRES 12 B 411 LEU TYR LEU SER GLU MET PRO GLN ASP GLY GLY LYS SER SEQRES 13 B 411 THR SER ARG ASN SER LYS ALA GLY ALA TYR TYR GLY ALA SEQRES 14 B 411 GLY TYR CYS ASP ALA GLN CYS TYR VAL THR PRO PHE ILE SEQRES 15 B 411 ASN GLY VAL GLY ASN ILE LYS GLY GLN GLY VAL CYS CYS SEQRES 16 B 411 ASN GLU LEU ASP ILE TRP GLU ALA ASN SER ARG ALA THR SEQRES 17 B 411 HIS ILE ALA PRO HIS PRO CYS SER LYS PRO GLY LEU TYR SEQRES 18 B 411 GLY CYS THR GLY ASP GLU CYS GLY SER SER GLY ILE CYS SEQRES 19 B 411 ASP LYS ALA GLY CYS GLY TRP ASN HIS ASN ARG ILE ASN SEQRES 20 B 411 VAL THR ASP PHE TYR GLY ARG GLY LYS GLN TYR LYS VAL SEQRES 21 B 411 ASP SER THR ARG LYS PHE THR VAL THR SER GLN PHE VAL SEQRES 22 B 411 ALA ASN LYS GLN GLY ASP LEU ILE GLU LEU HIS ARG HIS SEQRES 23 B 411 TYR ILE GLN ASP ASN LYS VAL ILE GLU SER ALA VAL VAL SEQRES 24 B 411 ASN ILE SER GLY PRO PRO LYS ILE ASN PHE ILE ASN ASP SEQRES 25 B 411 LYS TYR CYS ALA ALA THR GLY ALA ASN GLU TYR MET ARG SEQRES 26 B 411 LEU GLY GLY THR LYS GLN MET GLY ASP ALA MET SER ARG SEQRES 27 B 411 GLY MET VAL LEU ALA MET SER VAL TRP TRP SER GLU GLY SEQRES 28 B 411 ASP PHE MET ALA TRP LEU ASP GLN GLY VAL ALA GLY PRO SEQRES 29 B 411 CYS ASP ALA THR GLU GLY ASP PRO LYS ASN ILE VAL LYS SEQRES 30 B 411 VAL GLN PRO ASN PRO GLU VAL THR PHE SER ASN ILE ARG SEQRES 31 B 411 ILE GLY GLU ILE GLY SER THR SER SER VAL LYS ALA PRO SEQRES 32 B 411 ALA TYR PRO GLY PRO HIS ARG LEU
MODRES 4OVW ASN A 56 ASN GLYCOSYLATION SITE MODRES 4OVW ASN B 56 ASN GLYCOSYLATION SITE MODRES 4OVW PCA A 1 GLU PYROGLUTAMIC ACID MODRES 4OVW PCA B 1 GLU PYROGLUTAMIC ACID
HET PCA A 1 8 HET PCA B 1 8 HET NAG A 800 14 HET NAG B 800 14 HET IN1 A 801 23 HET IN1 B 801 23
HETNAM PCA PYROGLUTAMIC ACID HETNAM NAG N-ACETYL-D-GLUCOSAMINE HETNAM IN1 PROPIONIC ACID 2,2-DIHYDROXY-3-(1-GLUCOPYRANOSYLOXY)- HETNAM 2 IN1 METHYLPROPYL ESTER
FORMUL 1 PCA 2(C5 H7 N O3) FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 5 IN1 2(C13 H24 O10) FORMUL 7 HOH *699(H2 O)
HELIX 1 1 ALA A 35 HIS A 38 1 4 HELIX 2 2 GLU A 63 ASN A 69 1 7 HELIX 3 3 SER A 77 ASN A 82 1 6 HELIX 4 4 LYS A 155 THR A 157 5 3 HELIX 5 5 GLY A 225 CYS A 228 5 4 HELIX 6 6 HIS A 243 ILE A 246 5 4 HELIX 7 7 ASP A 312 ALA A 317 1 6 HELIX 8 8 ASN A 321 ARG A 325 1 5 HELIX 9 9 GLY A 328 ARG A 338 1 11 HELIX 10 10 ALA A 355 ASP A 358 1 4 HELIX 11 11 GLY A 360 ALA A 362 5 3 HELIX 12 12 PRO A 372 VAL A 378 1 7 HELIX 13 13 GLU B 63 ASN B 69 1 7 HELIX 14 14 SER B 77 ALA B 83 1 7 HELIX 15 15 LYS B 155 THR B 157 5 3 HELIX 16 16 ALA B 165 TYR B 167 5 3 HELIX 17 17 GLY B 225 CYS B 228 5 4 HELIX 18 18 HIS B 243 ILE B 246 5 4 HELIX 19 19 ASP B 312 ALA B 317 1 6 HELIX 20 20 ASN B 321 ARG B 325 1 5 HELIX 21 21 GLY B 328 ARG B 338 1 11 HELIX 22 22 ALA B 355 ASP B 358 1 4 HELIX 23 23 GLY B 360 ALA B 362 5 3 HELIX 24 24 PRO B 372 VAL B 378 1 7
SHEET 1 A11 LYS A 292 GLU A 295 0 SHEET 2 A11 LEU A 280 GLN A 289 -1 N GLN A 289 O LYS A 292 SHEET 3 A11 PHE A 266 ALA A 274 -1 N VAL A 273 O ILE A 281 SHEET 4 A11 GLU A 126 VAL A 131 -1 N VAL A 131 O PHE A 266 SHEET 5 A11 ARG A 390 GLY A 392 -1 N GLY A 392 O GLU A 126 SHEET 6 A11 LYS A 12 THR A 19 1 N TYR A 16 O ILE A 391 SHEET 7 A11 GLY A 23 ALA A 33 -1 N ASN A 29 O LEU A 13 SHEET 8 A11 ARG A 106 LEU A 110 -1 N LEU A 110 O TYR A 30 SHEET 9 A11 VAL A 341 TRP A 348 -1 N MET A 344 O VAL A 107 SHEET 10 A11 MET A 140 SER A 147 -1 N SER A 147 O VAL A 341 SHEET 11 A11 TRP A 201 ALA A 203 -1 N ALA A 203 O GLY A 142 SHEET 1 B 4 ILE A 85 SER A 88 0 SHEET 2 B 4 LYS A 91 GLN A 95 -1 N ARG A 93 O THR A 86 SHEET 3 B 4 GLU A 383 SER A 387 -1 N PHE A 386 O LEU A 92 SHEET 4 B 4 ASP A 130 GLU A 132 -1 N GLU A 132 O THR A 385 SHEET 1 C 2 GLY A 192 CYS A 194 0 SHEET 2 C 2 TYR A 221 CYS A 223 -1 N CYS A 223 O GLY A 192 SHEET 1 D 3 GLU A 197 ASP A 199 0 SHEET 2 D 3 ILE A 210 HIS A 213 -1 N HIS A 213 O GLU A 197 SHEET 3 D 3 CYS A 239 TRP A 241 -1 N TRP A 241 O ILE A 210 SHEET 1 E11 LYS B 292 GLU B 295 0 SHEET 2 E11 LEU B 280 GLN B 289 -1 N GLN B 289 O LYS B 292 SHEET 3 E11 PHE B 266 ALA B 274 -1 N VAL B 273 O ILE B 281 SHEET 4 E11 GLU B 126 VAL B 131 -1 N VAL B 131 O PHE B 266 SHEET 5 E11 ARG B 390 GLY B 392 -1 N GLY B 392 O GLU B 126 SHEET 6 E11 LYS B 12 THR B 19 1 N TYR B 16 O ILE B 391 SHEET 7 E11 GLY B 23 ALA B 33 -1 N ASN B 29 O LEU B 13 SHEET 8 E11 ARG B 106 LEU B 110 -1 N LEU B 110 O TYR B 30 SHEET 9 E11 VAL B 341 TRP B 348 -1 N MET B 344 O VAL B 107 SHEET 10 E11 MET B 140 SER B 147 -1 N SER B 147 O VAL B 341 SHEET 11 E11 TRP B 201 ALA B 203 -1 N ALA B 203 O GLY B 142 SHEET 1 F 4 ILE B 85 SER B 88 0 SHEET 2 F 4 LYS B 91 GLN B 95 -1 N ARG B 93 O THR B 86 SHEET 3 F 4 GLU B 383 SER B 387 -1 N PHE B 386 O LEU B 92 SHEET 4 F 4 ASP B 130 GLU B 132 -1 N GLU B 132 O THR B 385 SHEET 1 G 2 GLY B 192 CYS B 194 0 SHEET 2 G 2 TYR B 221 CYS B 223 -1 N CYS B 223 O GLY B 192 SHEET 1 H 3 GLU B 197 ASP B 199 0 SHEET 2 H 3 ILE B 210 HIS B 213 -1 N HIS B 213 O GLU B 197 SHEET 3 H 3 CYS B 239 TRP B 241 -1 N TRP B 241 O ILE B 210
SSBOND 1 CYS A 18 CYS A 24 1555 1555 2.05 SSBOND 2 CYS A 48 CYS A 70 1555 1555 2.01 SSBOND 3 CYS A 60 CYS A 66 1555 1555 2.07 SSBOND 4 CYS A 138 CYS A 365 1555 1555 2.05 SSBOND 5 CYS A 172 CYS A 195 1555 1555 2.13 SSBOND 6 CYS A 176 CYS A 194 1555 1555 2.04 SSBOND 7 CYS A 215 CYS A 234 1555 1555 2.01 SSBOND 8 CYS A 223 CYS A 228 1555 1555 2.08 SSBOND 9 CYS A 239 CYS A 315 1555 1555 2.04 SSBOND 10 CYS B 18 CYS B 24 1555 1555 2.03 SSBOND 11 CYS B 48 CYS B 70 1555 1555 2.04 SSBOND 12 CYS B 60 CYS B 66 1555 1555 2.08 SSBOND 13 CYS B 138 CYS B 365 1555 1555 2.09 SSBOND 14 CYS B 172 CYS B 195 1555 1555 2.09 SSBOND 15 CYS B 176 CYS B 194 1555 1555 2.05 SSBOND 16 CYS B 215 CYS B 234 1555 1555 2.00 SSBOND 17 CYS B 223 CYS B 228 1555 1555 2.12 SSBOND 18 CYS B 239 CYS B 315 1555 1555 2.05
LINK C PCA A 1 N THR A 2 1555 1555 1.39 LINK C PCA B 1 N THR B 2 1555 1555 1.41 LINK C7 IN1 A 801 CA GLU A 197 1555 1555 1.60 LINK C7 IN1 B 801 CA GLU B 197 1555 1555 1.59 LINK C1 NAG A 800 ND2 ASN A 56 1555 1555 1.40 LINK C1 NAG B 800 ND2 ASN B 56 1555 1555 1.42
SITE 1 AC1 4 GLN A 42 ASN A 44 ASN A 56 THR A 58 SITE 1 AC2 5 GLN B 42 ASN B 44 ASN B 56 THR B 58 SITE 2 AC2 5 HOH B 881 SITE 1 AC3 16 ARG A 106 TYR A 145 LEU A 146 ASP A 173 SITE 2 AC3 16 ALA A 174 ASN A 196 GLU A 197 LEU A 198 SITE 3 AC3 16 ASP A 199 GLU A 202 SER A 345 TRP A 347 SITE 4 AC3 16 HOH A 814 HOH A 907 HOH A 947 HOH A 949 SITE 1 AC4 16 ARG B 106 TYR B 145 LEU B 146 ASP B 173 SITE 2 AC4 16 ALA B 174 ASN B 196 GLU B 197 LEU B 198 SITE 3 AC4 16 ASP B 199 GLU B 202 SER B 345 TRP B 347 SITE 4 AC4 16 HOH B 830 HOH B 884 HOH B 909 HOH B1103
CRYST1 65.940 82.620 73.160 90.00 94.16 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.015165 0.000000 0.001103 0.00000
SCALE2 0.000000 0.012104 0.000000 0.00000
SCALE3 0.000000 0.000000 0.013705 0.00000