10 20 30 40 50 60 70 80 4OM9 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 27-JAN-14 4OM9
TITLE X-RAY CRYSTAL STRUCTURE OF THE PASSENGER DOMAIN OF PLASMID ENCODED TITLE 2 TOXIN, AN AUTROTANSPORTER ENTEROTOXIN FROM ENTEROAGGREGATIVE TITLE 3 ESCHERICHIA COLI (EAEC)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE PROTEASE PET; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PLASMID-ENCODED TOXIN PET; COMPND 5 EC: 3.4.21.-; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 216592; SOURCE 4 STRAIN: 042 / EAEC; SOURCE 5 GENE: EC042_PAA035, PET; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HB101 (PCEFN2); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCEFN2
KEYWDS BETA-HELIX, PEPTIDASE, ALPHA-FODRIN, HYDROLASE, EAEC, PLASMID ENCODED KEYWDS 2 TOXIN(PET)
EXPDTA X-RAY DIFFRACTION
AUTHOR J.D.MEZA-AGUILAR,P.FROMME,A.TORRES-LARIOS,G.MENDOZA-HERNANDEZ, AUTHOR 2 U.HERNANDEZ-CHINAS,R.A.ARREGUIN-ESPINOSA DE LOS MONTEROS,C.A.ESLAVA- AUTHOR 3 CAMPOS,R.FROMME
REVDAT 3 02-APR-14 4OM9 1 JRNL REVDAT 2 26-MAR-14 4OM9 1 AUTHOR JRNL REVDAT 1 12-MAR-14 4OM9 0
JRNL AUTH J.DOMINGO MEZA-AGUILAR,P.FROMME,A.TORRES-LARIOS, JRNL AUTH 2 G.MENDOZA-HERNANDEZ,U.HERNANDEZ-CHINAS, JRNL AUTH 3 R.A.ARREGUIN-ESPINOSA DE LOS MONTEROS,C.A.ESLAVA CAMPOS, JRNL AUTH 4 R.FROMME JRNL TITL X-RAY CRYSTAL STRUCTURE OF THE PASSENGER DOMAIN OF PLASMID JRNL TITL 2 ENCODED TOXIN(PET), AN AUTOTRANSPORTER ENTEROTOXIN FROM JRNL TITL 3 ENTEROAGGREGATIVE ESCHERICHIA COLI (EAEC). JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 445 439 2014 JRNL REFN ISSN 0006-291X JRNL PMID 24530907 JRNL DOI 10.1016/J.BBRC.2014.02.016
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 TITL CRYSTAL STRUCTURE OF THE PASSENGER DOMAIN OF THE ESCHERICHIA REMARK 1 TITL 2 COLI AUTOTRANSPORTER ESPP REMARK 1 REF J.MOL.BIOL. V.NO 5 985 2011 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 TITL PET TOXIN FROM ENTEROAGGREGATIVE ESCHERICHIA COLI PRODUCES REMARK 1 TITL 2 CELLULAR DAMAGE ASSOCIATED WITH FODRIN DISRUPTION REMARK 1 REF INFECT.IMMUN. V.O 10 5920 2000 REMARK 1 REFN ISSN 0019-9567 REMARK 1 REFERENCE 3 REMARK 1 TITL PET, AN AUTOTRANSPORTER ENTEROTOXIN FROM ENTEROAGGREGATIVE REMARK 1 TITL 2 ESCHERICHIA COLI REMARK 1 REF INFECT.IMMUN. V.NO.7 3155 1998 REMARK 1 REFN ISSN 0019-9567 REMARK 1 REFERENCE 4 REMARK 1 TITL IMPROVING THE ACCURACY OF MACROMOLECULAR STRUCTURE REMARK 1 TITL 2 REFINEMENT AT 7 ANGSTROM RESOLUTION REMARK 1 REF STRUCTURE V.O. 6 957 2012 REMARK 1 REFN ISSN 0969-2126
REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1439) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 55196 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 2808 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.4600 - 6.2365 1.00 2841 147 0.2002 0.2373 REMARK 3 2 6.2365 - 4.9527 1.00 2698 147 0.1962 0.2356 REMARK 3 3 4.9527 - 4.3274 1.00 2686 125 0.1616 0.1947 REMARK 3 4 4.3274 - 3.9321 0.98 2625 144 0.2012 0.2457 REMARK 3 5 3.9321 - 3.6504 0.92 2431 130 0.2831 0.3178 REMARK 3 6 3.6504 - 3.4353 0.99 2578 155 0.2403 0.2282 REMARK 3 7 3.4353 - 3.2633 1.00 2658 128 0.2035 0.2554 REMARK 3 8 3.2633 - 3.1213 1.00 2607 142 0.2206 0.2472 REMARK 3 9 3.1213 - 3.0012 1.00 2620 133 0.2237 0.2721 REMARK 3 10 3.0012 - 2.8977 1.00 2613 144 0.2286 0.3107 REMARK 3 11 2.8977 - 2.8071 1.00 2636 132 0.2229 0.2886 REMARK 3 12 2.8071 - 2.7269 1.00 2598 154 0.2282 0.3020 REMARK 3 13 2.7269 - 2.6551 1.00 2618 132 0.2338 0.2980 REMARK 3 14 2.6551 - 2.5903 1.00 2592 146 0.2283 0.2951 REMARK 3 15 2.5903 - 2.5314 1.00 2600 131 0.2395 0.2830 REMARK 3 16 2.5314 - 2.4776 1.00 2624 137 0.2470 0.3288 REMARK 3 17 2.4776 - 2.4280 1.00 2557 159 0.2492 0.2991 REMARK 3 18 2.4280 - 2.3822 1.00 2637 123 0.2604 0.3037 REMARK 3 19 2.3822 - 2.3397 1.00 2569 151 0.2754 0.3102 REMARK 3 20 2.3397 - 2.3000 1.00 2600 148 0.2966 0.3422 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 7146 REMARK 3 ANGLE : 1.143 9657 REMARK 3 CHIRALITY : 0.046 1104 REMARK 3 PLANARITY : 0.005 1267 REMARK 3 DIHEDRAL : 16.041 2552 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 3:60) REMARK 3 ORIGIN FOR THE GROUP (A): -26.8707 30.6624 -41.1825 REMARK 3 T TENSOR REMARK 3 T11: 0.3531 T22: 0.5018 REMARK 3 T33: 0.3632 T12: -0.0286 REMARK 3 T13: 0.0021 T23: -0.0250 REMARK 3 L TENSOR REMARK 3 L11: 0.8574 L22: 1.0419 REMARK 3 L33: 1.0611 L12: -0.9250 REMARK 3 L13: -0.0115 L23: -0.1184 REMARK 3 S TENSOR REMARK 3 S11: -0.1428 S12: -0.5365 S13: 0.0543 REMARK 3 S21: 0.2192 S22: 0.1930 S23: -0.1143 REMARK 3 S31: 0.2869 S32: -0.2264 S33: 0.0004 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 61:134) REMARK 3 ORIGIN FOR THE GROUP (A): -34.6612 27.1433 -61.8728 REMARK 3 T TENSOR REMARK 3 T11: 0.3364 T22: 0.4501 REMARK 3 T33: 0.3692 T12: -0.0149 REMARK 3 T13: 0.0231 T23: -0.0451 REMARK 3 L TENSOR REMARK 3 L11: 2.0422 L22: 0.5625 REMARK 3 L33: 1.7360 L12: 0.5057 REMARK 3 L13: -0.2666 L23: -0.2128 REMARK 3 S TENSOR REMARK 3 S11: 0.0735 S12: 0.3376 S13: -0.0220 REMARK 3 S21: 0.0263 S22: -0.0074 S23: 0.1089 REMARK 3 S31: -0.1180 S32: -0.1505 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 135:251) REMARK 3 ORIGIN FOR THE GROUP (A): -38.9959 30.1256 -47.9133 REMARK 3 T TENSOR REMARK 3 T11: 0.2757 T22: 0.4528 REMARK 3 T33: 0.3335 T12: -0.0290 REMARK 3 T13: 0.0148 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 1.9781 L22: 0.1793 REMARK 3 L33: 1.0208 L12: 0.2839 REMARK 3 L13: 0.0321 L23: 0.3800 REMARK 3 S TENSOR REMARK 3 S11: 0.0408 S12: -0.4115 S13: 0.0900 REMARK 3 S21: 0.0892 S22: -0.0595 S23: 0.0368 REMARK 3 S31: -0.0006 S32: -0.3075 S33: -0.0012 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 252:408) REMARK 3 ORIGIN FOR THE GROUP (A): -15.7302 19.3243 -76.6067 REMARK 3 T TENSOR REMARK 3 T11: 0.3267 T22: 0.4636 REMARK 3 T33: 0.2834 T12: 0.0382 REMARK 3 T13: 0.0123 T23: -0.0444 REMARK 3 L TENSOR REMARK 3 L11: 1.6594 L22: 0.4436 REMARK 3 L33: 1.7547 L12: -0.6239 REMARK 3 L13: 0.6737 L23: 0.8810 REMARK 3 S TENSOR REMARK 3 S11: 0.0996 S12: 0.7640 S13: -0.0742 REMARK 3 S21: -0.1248 S22: -0.0828 S23: 0.0290 REMARK 3 S31: 0.1226 S32: -0.0237 S33: 0.0528 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 409:430) REMARK 3 ORIGIN FOR THE GROUP (A): -2.8630 26.9322 -62.6123 REMARK 3 T TENSOR REMARK 3 T11: 0.3064 T22: 0.4284 REMARK 3 T33: 0.2799 T12: 0.0326 REMARK 3 T13: -0.0005 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 1.1457 L22: 0.5672 REMARK 3 L33: 0.6122 L12: 0.1860 REMARK 3 L13: 0.7752 L23: 0.1809 REMARK 3 S TENSOR REMARK 3 S11: -0.0418 S12: -0.0554 S13: 0.2949 REMARK 3 S21: 0.0898 S22: -0.0102 S23: 0.0393 REMARK 3 S31: -0.2322 S32: -0.0863 S33: 0.0002 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 431:528) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6575 26.6816 -51.1482 REMARK 3 T TENSOR REMARK 3 T11: 0.2931 T22: 0.3393 REMARK 3 T33: 0.3557 T12: 0.0409 REMARK 3 T13: -0.0013 T23: -0.0481 REMARK 3 L TENSOR REMARK 3 L11: 1.8943 L22: 0.2658 REMARK 3 L33: 1.1096 L12: -0.0723 REMARK 3 L13: 0.4826 L23: -0.5340 REMARK 3 S TENSOR REMARK 3 S11: 0.0622 S12: -0.1506 S13: 0.0711 REMARK 3 S21: 0.1157 S22: -0.0682 S23: -0.1332 REMARK 3 S31: 0.0426 S32: 0.1274 S33: -0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 529:539) REMARK 3 ORIGIN FOR THE GROUP (A): -22.8831 57.2962 -49.5012 REMARK 3 T TENSOR REMARK 3 T11: 0.3757 T22: 0.4950 REMARK 3 T33: 0.9933 T12: -0.0320 REMARK 3 T13: -0.0138 T23: -0.1438 REMARK 3 L TENSOR REMARK 3 L11: 2.0978 L22: 0.0343 REMARK 3 L33: 0.2492 L12: -0.1915 REMARK 3 L13: -0.5982 L23: 0.0947 REMARK 3 S TENSOR REMARK 3 S11: -0.7526 S12: 0.6458 S13: -0.3963 REMARK 3 S21: -0.6378 S22: 0.4504 S23: 0.6558 REMARK 3 S31: -0.1283 S32: 0.3552 S33: 0.2013 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 540:576) REMARK 3 ORIGIN FOR THE GROUP (A): -18.1115 43.7080 -35.0565 REMARK 3 T TENSOR REMARK 3 T11: 0.3511 T22: 0.5356 REMARK 3 T33: 0.4926 T12: 0.0288 REMARK 3 T13: 0.0477 T23: -0.1991 REMARK 3 L TENSOR REMARK 3 L11: 0.4583 L22: 0.7530 REMARK 3 L33: 0.5322 L12: 0.4260 REMARK 3 L13: 0.4234 L23: 0.6196 REMARK 3 S TENSOR REMARK 3 S11: -0.1056 S12: -0.4257 S13: 0.5764 REMARK 3 S21: 0.3395 S22: 0.1071 S23: 0.0699 REMARK 3 S31: -0.0533 S32: 0.0279 S33: -0.0109 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 577:713) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1838 26.1275 -35.6488 REMARK 3 T TENSOR REMARK 3 T11: 0.3808 T22: 0.4813 REMARK 3 T33: 0.3521 T12: 0.0192 REMARK 3 T13: 0.0031 T23: -0.0519 REMARK 3 L TENSOR REMARK 3 L11: 1.8730 L22: 0.7296 REMARK 3 L33: 1.7068 L12: -0.5138 REMARK 3 L13: 1.8897 L23: -0.5030 REMARK 3 S TENSOR REMARK 3 S11: 0.0244 S12: -0.1657 S13: -0.0181 REMARK 3 S21: 0.1452 S22: -0.0331 S23: -0.0368 REMARK 3 S31: 0.0995 S32: -0.0461 S33: -0.0001 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 714:724) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0517 1.8585 -25.3927 REMARK 3 T TENSOR REMARK 3 T11: 1.3630 T22: 1.0859 REMARK 3 T33: 0.7112 T12: 0.2130 REMARK 3 T13: 0.0428 T23: 0.1176 REMARK 3 L TENSOR REMARK 3 L11: 0.3316 L22: 0.2593 REMARK 3 L33: 0.3865 L12: -0.2920 REMARK 3 L13: -0.3184 L23: 0.2966 REMARK 3 S TENSOR REMARK 3 S11: -0.5297 S12: 0.5267 S13: 0.4254 REMARK 3 S21: 0.3641 S22: -0.4474 S23: 0.3438 REMARK 3 S31: 0.3867 S32: -1.0521 S33: -0.0120 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 725:751) REMARK 3 ORIGIN FOR THE GROUP (A): 16.9138 18.1394 -17.8838 REMARK 3 T TENSOR REMARK 3 T11: 0.7913 T22: 0.9335 REMARK 3 T33: 0.5390 T12: -0.0635 REMARK 3 T13: -0.2261 T23: 0.1253 REMARK 3 L TENSOR REMARK 3 L11: 1.2492 L22: 0.6476 REMARK 3 L33: 0.3602 L12: -0.0901 REMARK 3 L13: -0.2461 L23: 0.0325 REMARK 3 S TENSOR REMARK 3 S11: -0.0330 S12: -0.3464 S13: -0.0670 REMARK 3 S21: -0.0874 S22: 0.1701 S23: 0.0898 REMARK 3 S31: 0.6350 S32: -0.3684 S33: 0.0722 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 752:770) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8982 17.5657 -10.6795 REMARK 3 T TENSOR REMARK 3 T11: 1.0534 T22: 1.0148 REMARK 3 T33: 0.2611 T12: 0.0697 REMARK 3 T13: 0.0046 T23: 0.0514 REMARK 3 L TENSOR REMARK 3 L11: 1.7775 L22: 0.5348 REMARK 3 L33: 0.0794 L12: -0.2925 REMARK 3 L13: 0.0976 L23: -0.1972 REMARK 3 S TENSOR REMARK 3 S11: -0.0131 S12: -1.0301 S13: 0.0687 REMARK 3 S21: 0.6951 S22: -0.1980 S23: -0.0914 REMARK 3 S31: 0.6355 S32: 0.1344 S33: 0.0438 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN A AND RESID 771:786) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6881 -0.6567 -16.2411 REMARK 3 T TENSOR REMARK 3 T11: 2.5468 T22: 1.4465 REMARK 3 T33: 1.2059 T12: -0.9479 REMARK 3 T13: 0.4039 T23: 0.0222 REMARK 3 L TENSOR REMARK 3 L11: 2.1952 L22: 0.2645 REMARK 3 L33: 0.5341 L12: -0.5167 REMARK 3 L13: 0.7720 L23: 0.0134 REMARK 3 S TENSOR REMARK 3 S11: 0.3776 S12: 0.2454 S13: 0.0605 REMARK 3 S21: -0.1385 S22: 0.4790 S23: 0.3548 REMARK 3 S31: -0.1059 S32: 0.0481 S33: 0.2302 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN A AND RESID 787:853) REMARK 3 ORIGIN FOR THE GROUP (A): 22.0759 16.0085 -4.3507 REMARK 3 T TENSOR REMARK 3 T11: 1.1434 T22: 1.3213 REMARK 3 T33: 0.6218 T12: -0.1885 REMARK 3 T13: -0.3570 T23: 0.2058 REMARK 3 L TENSOR REMARK 3 L11: 2.8541 L22: 0.6855 REMARK 3 L33: 0.5643 L12: 0.5094 REMARK 3 L13: -0.9939 L23: -0.0566 REMARK 3 S TENSOR REMARK 3 S11: 0.4927 S12: -0.9303 S13: -0.1700 REMARK 3 S21: 0.6204 S22: -0.0569 S23: -0.0647 REMARK 3 S31: 0.3527 S32: -0.3496 S33: 1.5333 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN A AND RESID 854:880) REMARK 3 ORIGIN FOR THE GROUP (A): 27.9221 13.5934 4.8710 REMARK 3 T TENSOR REMARK 3 T11: 1.5438 T22: 1.5673 REMARK 3 T33: 0.6403 T12: -0.2217 REMARK 3 T13: -0.3128 T23: 0.1364 REMARK 3 L TENSOR REMARK 3 L11: 0.8201 L22: 2.6298 REMARK 3 L33: 0.5479 L12: 1.3862 REMARK 3 L13: 0.6636 L23: 1.2055 REMARK 3 S TENSOR REMARK 3 S11: 0.1576 S12: -0.7390 S13: 0.1199 REMARK 3 S21: 0.5643 S22: -0.5517 S23: 0.1647 REMARK 3 S31: 0.0873 S32: -0.3734 S33: -0.2136 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN A AND RESID 881:888) REMARK 3 ORIGIN FOR THE GROUP (A): 43.7325 3.2297 8.2311 REMARK 3 T TENSOR REMARK 3 T11: 1.6360 T22: 1.3849 REMARK 3 T33: 0.8369 T12: 0.4414 REMARK 3 T13: -0.3224 T23: 0.5966 REMARK 3 L TENSOR REMARK 3 L11: 0.5750 L22: 0.0511 REMARK 3 L33: 0.6801 L12: -0.0967 REMARK 3 L13: -0.4463 L23: -0.0301 REMARK 3 S TENSOR REMARK 3 S11: -0.1708 S12: -0.0971 S13: 0.0351 REMARK 3 S21: -0.2790 S22: -0.1362 S23: -0.1604 REMARK 3 S31: 0.2384 S32: 0.1028 S33: -0.6465 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN A AND RESID 890:906) REMARK 3 ORIGIN FOR THE GROUP (A): 24.2815 15.4122 12.2424 REMARK 3 T TENSOR REMARK 3 T11: 1.2454 T22: 1.6309 REMARK 3 T33: 0.8356 T12: -0.1053 REMARK 3 T13: -0.4236 T23: 0.2165 REMARK 3 L TENSOR REMARK 3 L11: 9.9673 L22: 2.2169 REMARK 3 L33: 0.8901 L12: 0.8096 REMARK 3 L13: -2.9379 L23: -0.4560 REMARK 3 S TENSOR REMARK 3 S11: 0.4038 S12: 0.3422 S13: 0.5338 REMARK 3 S21: -0.4533 S22: 1.1297 S23: 0.6144 REMARK 3 S31: 0.3416 S32: -0.4637 S33: 1.4891 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: (CHAIN A AND RESID 907:922) REMARK 3 ORIGIN FOR THE GROUP (A): 29.6512 0.4540 6.1140 REMARK 3 T TENSOR REMARK 3 T11: 1.9536 T22: 1.5478 REMARK 3 T33: 1.5225 T12: -0.1715 REMARK 3 T13: -0.5570 T23: 0.4309 REMARK 3 L TENSOR REMARK 3 L11: 0.0338 L22: 0.0169 REMARK 3 L33: 0.0648 L12: 0.0209 REMARK 3 L13: -0.0433 L23: -0.0047 REMARK 3 S TENSOR REMARK 3 S11: -0.1674 S12: 0.4677 S13: -0.1362 REMARK 3 S21: 0.3167 S22: -0.0686 S23: 0.0740 REMARK 3 S31: -0.8883 S32: 0.1686 S33: 0.0022 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: (CHAIN A AND RESID 923:941) REMARK 3 ORIGIN FOR THE GROUP (A): 31.0744 9.8479 12.5789 REMARK 3 T TENSOR REMARK 3 T11: 2.1998 T22: 2.0008 REMARK 3 T33: 1.1550 T12: 0.1445 REMARK 3 T13: -0.5983 T23: 0.0229 REMARK 3 L TENSOR REMARK 3 L11: 0.2123 L22: 1.4902 REMARK 3 L33: 0.4110 L12: -0.3031 REMARK 3 L13: -0.2702 L23: 0.6843 REMARK 3 S TENSOR REMARK 3 S11: 0.1449 S12: -0.4877 S13: 0.6393 REMARK 3 S21: 0.4019 S22: -0.3479 S23: -1.4804 REMARK 3 S31: -0.9889 S32: -0.7825 S33: 0.0094 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: (CHAIN A AND RESID 943:964) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5194 -1.7305 -4.4985 REMARK 3 T TENSOR REMARK 3 T11: 1.6394 T22: 1.3445 REMARK 3 T33: 0.9255 T12: -0.1024 REMARK 3 T13: -0.2144 T23: 0.1271 REMARK 3 L TENSOR REMARK 3 L11: 0.2380 L22: 0.0845 REMARK 3 L33: 0.0506 L12: 0.0373 REMARK 3 L13: -0.0580 L23: 0.0298 REMARK 3 S TENSOR REMARK 3 S11: 0.5932 S12: -0.0191 S13: 0.0743 REMARK 3 S21: 1.1368 S22: -0.0470 S23: 0.8872 REMARK 3 S31: 0.2943 S32: 0.0321 S33: 0.0024 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 4OM9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAR-14. REMARK 100 THE RCSB ID CODE IS RCSB084670.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9787 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55340 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 41.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 25.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3SZE REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13 MG/ML PROTEIN IN 50 MM TRIS-HCL, 5 REMARK 280 MM EDTA, PH 6.5 AND 0.3 M NACL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.87900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.43450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.96300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.43450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.87900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.96300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 ASN A 2 REMARK 465 ASP A 36 REMARK 465 GLY A 37 REMARK 465 THR A 38 REMARK 465 ILE A 277 REMARK 465 GLY A 278 REMARK 465 ASN A 279 REMARK 465 THR A 280 REMARK 465 THR A 281 REMARK 465 GLN A 282 REMARK 465 ASP A 283 REMARK 465 ILE A 284 REMARK 465 GLU A 285 REMARK 465 LYS A 286 REMARK 465 ASN A 287 REMARK 465 LYS A 288 REMARK 465 ASN A 289 REMARK 465 ASN A 290 REMARK 465 GLN A 291 REMARK 465 GLY A 889 REMARK 465 ALA A 942 REMARK 465 ALA A 946 REMARK 465 ALA A 947 REMARK 465 LYS A 948 REMARK 465 LYS A 949 REMARK 465 ALA A 950 REMARK 465 THR A 951 REMARK 465 SER A 952 REMARK 465 LEU A 953 REMARK 465 MET A 954 REMARK 465 SER A 955 REMARK 465 GLY A 956 REMARK 465 GLY A 957 REMARK 465 VAL A 965 REMARK 465 ASN A 966
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 771 OG REMARK 470 THR A 773 CG2 REMARK 470 TYR A 775 CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE A 778 CG CD1 CD2 CE1 CE2 CZ REMARK 470 MET A 825 CG SD CE REMARK 470 VAL A 840 CG1 CG2 REMARK 470 VAL A 851 CG1 CG2 REMARK 470 ILE A 863 CG1 CG2 CD1 REMARK 470 GLN A 924 CG CD OE1 NE2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1340 O HOH A 1353 1.84 REMARK 500 O HOH A 1205 O HOH A 1380 1.89 REMARK 500 O GLY A 707 O HOH A 1481 1.91 REMARK 500 O HOH A 1427 O HOH A 1461 1.94 REMARK 500 ND2 ASN A 124 O HOH A 1291 1.95 REMARK 500 O HOH A 1426 O HOH A 1463 1.96 REMARK 500 OH TYR A 620 O HOH A 1050 1.96 REMARK 500 O THR A 561 O HOH A 1025 1.96 REMARK 500 O HOH A 1538 O HOH A 1539 1.98 REMARK 500 O HOH A 1069 O HOH A 1092 1.99 REMARK 500 O THR A 98 O HOH A 1300 2.01 REMARK 500 O HOH A 1242 O HOH A 1260 2.02 REMARK 500 OG SER A 677 O HOH A 1520 2.02 REMARK 500 N ASN A 292 O HOH A 1004 2.02 REMARK 500 O HOH A 1100 O HOH A 1400 2.05 REMARK 500 O ALA A 693 OH TYR A 727 2.06 REMARK 500 O HOH A 1433 O HOH A 1473 2.07 REMARK 500 O HOH A 1455 O HOH A 1459 2.09 REMARK 500 OE1 GLN A 238 O HOH A 1013 2.09 REMARK 500 OE2 GLU A 366 O HOH A 1244 2.10 REMARK 500 O HOH A 1285 O HOH A 1457 2.10 REMARK 500 O ARG A 853 O HOH A 1519 2.11 REMARK 500 O HOH A 1310 O HOH A 1321 2.11 REMARK 500 OD2 ASP A 644 O HOH A 1197 2.11 REMARK 500 O HOH A 1207 O HOH A 1355 2.14 REMARK 500 O GLY A 209 O HOH A 1033 2.14 REMARK 500 OD2 ASP A 49 O HOH A 1352 2.14 REMARK 500 O ASN A 376 O HOH A 1224 2.14 REMARK 500 O HOH A 1100 O HOH A 1282 2.15 REMARK 500 O HOH A 1209 O HOH A 1222 2.15 REMARK 500 ND2 ASN A 469 O HOH A 1499 2.15 REMARK 500 OG1 THR A 119 O HOH A 1474 2.16 REMARK 500 NE2 HIS A 486 OG SER A 508 2.16 REMARK 500 O HOH A 1531 O HOH A 1534 2.17 REMARK 500 NE2 HIS A 436 O HOH A 1094 2.17 REMARK 500 N GLY A 235 O HOH A 1141 2.17 REMARK 500 OG1 THR A 439 O HOH A 1110 2.17 REMARK 500 O THR A 276 O HOH A 1036 2.17 REMARK 500 O HOH A 1257 O HOH A 1310 2.18 REMARK 500 O HOH A 1236 O HOH A 1341 2.18 REMARK 500 OD1 ASP A 860 O HOH A 1519 2.18 REMARK 500 O HOH A 1460 O HOH A 1489 2.18 REMARK 500 O HOH A 1379 O HOH A 1415 2.18 REMARK 500 OG1 THR A 451 O HOH A 1245 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1273 O HOH A 1295 4554 2.02 REMARK 500 O HOH A 1049 O HOH A 1364 4454 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 877 CB - CA - C ANGL. DEV. = -15.4 DEGREES REMARK 500 ASP A 878 N - CA - C ANGL. DEV. = 17.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 69 -151.71 -153.89 REMARK 500 LYS A 77 79.63 -54.25 REMARK 500 SER A 78 -72.30 52.55 REMARK 500 SER A 79 -43.42 58.73 REMARK 500 ASP A 101 17.77 82.46 REMARK 500 SER A 158 61.78 34.31 REMARK 500 ASN A 234 -61.36 -137.01 REMARK 500 GLN A 238 131.95 -38.30 REMARK 500 ASN A 266 -151.82 -89.57 REMARK 500 ASP A 319 -166.30 -77.62 REMARK 500 ALA A 356 150.57 -46.70 REMARK 500 ASN A 409 38.71 -147.96 REMARK 500 ASN A 427 -14.25 75.14 REMARK 500 HIS A 485 77.85 -117.74 REMARK 500 ASN A 511 -0.98 72.52 REMARK 500 ASN A 533 43.88 -75.32 REMARK 500 LEU A 538 -11.41 73.53 REMARK 500 SER A 591 -154.45 -152.77 REMARK 500 ALA A 596 -169.48 -114.45 REMARK 500 ASP A 659 -156.55 53.29 REMARK 500 LYS A 667 -5.09 72.85 REMARK 500 SER A 701 -160.10 -120.65 REMARK 500 GLU A 716 -126.90 -105.64 REMARK 500 SER A 717 -72.75 59.19 REMARK 500 GLU A 720 -150.34 -119.93 REMARK 500 ILE A 721 142.02 67.29 REMARK 500 TYR A 732 174.56 74.67 REMARK 500 ASN A 745 70.73 55.12 REMARK 500 SER A 755 145.39 -172.22 REMARK 500 LEU A 761 157.65 70.51 REMARK 500 SER A 762 -45.62 -159.31 REMARK 500 PHE A 763 119.32 1.49 REMARK 500 ALA A 766 83.48 -62.35 REMARK 500 ASN A 770 -125.88 -159.37 REMARK 500 ALA A 772 88.59 -63.33 REMARK 500 TYR A 775 178.49 58.68 REMARK 500 LEU A 783 -6.41 -141.90 REMARK 500 ASP A 784 -76.45 57.88 REMARK 500 LYS A 795 78.64 -102.56 REMARK 500 LEU A 801 93.83 -161.99 REMARK 500 MET A 803 51.04 -146.89 REMARK 500 ASN A 804 88.66 -68.66 REMARK 500 ASN A 805 108.32 72.02 REMARK 500 ALA A 806 -157.21 -164.21 REMARK 500 LEU A 807 -135.25 -152.84 REMARK 500 VAL A 810 99.55 47.34 REMARK 500 LYS A 817 -79.41 -69.65 REMARK 500 THR A 822 87.32 -64.58 REMARK 500 ASN A 829 128.71 -178.23 REMARK 500 LYS A 832 93.85 -57.78 REMARK 500 REMARK 500 THIS ENTRY HAS 93 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 878 PHE A 879 -135.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASP A 878 18.1 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1441 DISTANCE = 7.39 ANGSTROMS REMARK 525 HOH A1453 DISTANCE = 7.51 ANGSTROMS REMARK 525 HOH A1503 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A1526 DISTANCE = 5.41 ANGSTROMS REMARK 525 HOH A1534 DISTANCE = 5.02 ANGSTROMS
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SZE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PASSENGER DOMAIN OF THE E. COLI REMARK 900 AUTOTRANSPORTER ESPP
DBREF 4OM9 A 1 966 UNP O68900 PET_ECO44 53 1018
SEQRES 1 A 966 ALA ASN MET ASP ILE SER LYS ALA TRP ALA ARG ASP TYR SEQRES 2 A 966 LEU ASP LEU ALA GLN ASN LYS GLY VAL PHE GLN PRO GLY SEQRES 3 A 966 SER THR HIS VAL LYS ILE LYS LEU LYS ASP GLY THR ASP SEQRES 4 A 966 PHE SER PHE PRO ALA LEU PRO VAL PRO ASP PHE SER SER SEQRES 5 A 966 ALA THR ALA ASN GLY ALA ALA THR SER ILE GLY GLY ALA SEQRES 6 A 966 TYR ALA VAL THR VAL ALA HIS ASN ALA LYS ASN LYS SER SEQRES 7 A 966 SER ALA ASN TYR GLN THR TYR GLY SER THR GLN TYR THR SEQRES 8 A 966 GLN ILE ASN ARG MET THR THR GLY ASN ASP PHE SER ILE SEQRES 9 A 966 GLN ARG LEU ASN LYS TYR VAL VAL GLU THR ARG GLY ALA SEQRES 10 A 966 ASP THR SER PHE ASN TYR ASN GLU ASN ASN GLN ASN ILE SEQRES 11 A 966 ILE ASP ARG TYR GLY VAL ASP VAL GLY ASN GLY LYS LYS SEQRES 12 A 966 GLU ILE ILE GLY PHE ARG VAL GLY SER GLY ASN THR THR SEQRES 13 A 966 PHE SER GLY ILE LYS THR SER GLN THR TYR GLN ALA ASP SEQRES 14 A 966 LEU LEU SER ALA SER LEU PHE HIS ILE THR ASN LEU ARG SEQRES 15 A 966 ALA ASN THR VAL GLY GLY ASN LYS VAL GLU TYR GLU ASN SEQRES 16 A 966 ASP SER TYR PHE THR ASN LEU THR THR ASN GLY ASP SER SEQRES 17 A 966 GLY SER GLY VAL TYR VAL PHE ASP ASN LYS GLU ASP LYS SEQRES 18 A 966 TRP VAL LEU LEU GLY THR THR HIS GLY ILE ILE GLY ASN SEQRES 19 A 966 GLY LYS THR GLN LYS THR TYR VAL THR PRO PHE ASP SER SEQRES 20 A 966 LYS THR THR ASN GLU LEU LYS GLN LEU PHE ILE GLN ASN SEQRES 21 A 966 VAL ASN ILE ASP ASN ASN THR ALA THR ILE GLY GLY GLY SEQRES 22 A 966 LYS ILE THR ILE GLY ASN THR THR GLN ASP ILE GLU LYS SEQRES 23 A 966 ASN LYS ASN ASN GLN ASN LYS ASP LEU VAL PHE SER GLY SEQRES 24 A 966 GLY GLY LYS ILE SER LEU LYS GLU ASN LEU ASP LEU GLY SEQRES 25 A 966 TYR GLY GLY PHE ILE PHE ASP GLU ASN LYS LYS TYR THR SEQRES 26 A 966 VAL SER ALA GLU GLY ASN ASN ASN VAL THR PHE LYS GLY SEQRES 27 A 966 ALA GLY ILE ASP ILE GLY LYS GLY SER THR VAL ASP TRP SEQRES 28 A 966 ASN ILE LYS TYR ALA SER ASN ASP ALA LEU HIS LYS ILE SEQRES 29 A 966 GLY GLU GLY SER LEU ASN VAL ILE GLN ALA GLN ASN THR SEQRES 30 A 966 ASN LEU LYS THR GLY ASN GLY THR VAL ILE LEU GLY ALA SEQRES 31 A 966 GLN LYS THR PHE ASN ASN ILE TYR VAL ALA GLY GLY PRO SEQRES 32 A 966 GLY THR VAL GLN LEU ASN ALA GLU ASN ALA LEU GLY GLU SEQRES 33 A 966 GLY ASP TYR ALA GLY ILE PHE PHE THR GLU ASN GLY GLY SEQRES 34 A 966 LYS LEU ASP LEU ASN GLY HIS ASN GLN THR PHE LYS LYS SEQRES 35 A 966 ILE ALA ALA THR ASP SER GLY THR THR ILE THR ASN SER SEQRES 36 A 966 ASN THR THR LYS GLU SER VAL LEU SER VAL ASN ASN GLN SEQRES 37 A 966 ASN ASN TYR ILE TYR HIS GLY ASN VAL ASP GLY ASN VAL SEQRES 38 A 966 ARG LEU GLU HIS HIS LEU ASP THR LYS GLN ASP ASN ALA SEQRES 39 A 966 ARG LEU ILE LEU ASP GLY ASP ILE GLN ALA ASN SER ILE SEQRES 40 A 966 SER ILE LYS ASN ALA PRO LEU VAL MET GLN GLY HIS ALA SEQRES 41 A 966 THR ASP HIS ALA ILE PHE ARG THR THR LYS THR ASN ASN SEQRES 42 A 966 CYS PRO GLU PHE LEU CYS GLY VAL ASP TRP VAL THR ARG SEQRES 43 A 966 ILE LYS ASN ALA GLU ASN SER VAL ASN GLN LYS ASN LYS SEQRES 44 A 966 THR THR TYR LYS SER ASN ASN GLN VAL SER ASP LEU SER SEQRES 45 A 966 GLN PRO ASP TRP GLU THR ARG LYS PHE ARG PHE ASP ASN SEQRES 46 A 966 LEU ASN ILE GLU ASP SER SER LEU SER ILE ALA ARG ASN SEQRES 47 A 966 ALA ASP VAL GLU GLY ASN ILE GLN ALA LYS ASN SER VAL SEQRES 48 A 966 ILE ASN ILE GLY ASP LYS THR ALA TYR ILE ASP LEU TYR SEQRES 49 A 966 SER GLY LYS ASN ILE THR GLY ALA GLY PHE THR PHE ARG SEQRES 50 A 966 GLN ASP ILE LYS SER GLY ASP SER ILE GLY GLU SER LYS SEQRES 51 A 966 PHE THR GLY GLY ILE MET ALA THR ASP GLY SER ILE SER SEQRES 52 A 966 ILE GLY ASP LYS ALA ILE VAL THR LEU ASN THR VAL SER SEQRES 53 A 966 SER LEU ASP ARG THR ALA LEU THR ILE HIS LYS GLY ALA SEQRES 54 A 966 ASN VAL THR ALA SER SER SER LEU PHE THR THR SER ASN SEQRES 55 A 966 ILE LYS SER GLY GLY ASP LEU THR LEU THR GLY ALA THR SEQRES 56 A 966 GLU SER THR GLY GLU ILE THR PRO SER MET PHE TYR ALA SEQRES 57 A 966 ALA GLY GLY TYR GLU LEU THR GLU ASP GLY ALA ASN PHE SEQRES 58 A 966 THR ALA LYS ASN GLN ALA SER VAL THR GLY ASP ILE LYS SEQRES 59 A 966 SER GLU LYS ALA ALA LYS LEU SER PHE GLY SER ALA ASP SEQRES 60 A 966 LYS ASP ASN SER ALA THR ARG TYR SER GLN PHE ALA LEU SEQRES 61 A 966 ALA MET LEU ASP GLY PHE ASP THR SER TYR GLN GLY SER SEQRES 62 A 966 ILE LYS ALA ALA GLN SER SER LEU ALA MET ASN ASN ALA SEQRES 63 A 966 LEU TRP LYS VAL THR GLY ASN SER GLU LEU LYS LYS LEU SEQRES 64 A 966 ASN SER THR GLY SER MET VAL LEU PHE ASN GLY GLY LYS SEQRES 65 A 966 ASN ILE PHE ASN THR LEU THR VAL ASP GLU LEU THR THR SEQRES 66 A 966 SER ASN SER ALA PHE VAL MET ARG THR ASN THR GLN GLN SEQRES 67 A 966 ALA ASP GLN LEU ILE VAL LYS ASN LYS LEU GLU GLY ALA SEQRES 68 A 966 ASN ASN LEU LEU LEU VAL ASP PHE ILE GLU LYS LYS GLY SEQRES 69 A 966 ASN ASP LYS ASN GLY LEU ASN ILE ASP LEU VAL LYS ALA SEQRES 70 A 966 PRO GLU ASN THR SER LYS ASP VAL PHE LYS THR GLU THR SEQRES 71 A 966 GLN THR ILE GLY PHE SER ASP VAL THR PRO GLU ILE LYS SEQRES 72 A 966 GLN GLN GLU LYS ASP GLY LYS SER VAL TRP THR LEU THR SEQRES 73 A 966 GLY TYR LYS THR VAL ALA ASN ALA ASP ALA ALA LYS LYS SEQRES 74 A 966 ALA THR SER LEU MET SER GLY GLY TYR LYS ALA PHE LEU SEQRES 75 A 966 ALA GLU VAL ASN
FORMUL 2 HOH *543(H2 O)
HELIX 1 1 TRP A 9 GLN A 18 1 10 HELIX 2 2 HIS A 72 ALA A 74 5 3 HELIX 3 3 ASN A 126 GLY A 135 1 10 HELIX 4 4 THR A 204 SER A 208 5 5 HELIX 5 5 ASP A 246 LEU A 256 1 11 HELIX 6 6 GLY A 330 ASN A 332 5 3 HELIX 7 7 ASP A 542 GLU A 551 1 10 HELIX 8 8 GLU A 551 LYS A 559 1 9 HELIX 9 9 THR A 560 SER A 564 5 5
SHEET 1 A 2 LYS A 31 ILE A 32 0 SHEET 2 A 2 PHE A 40 SER A 41 -1 O PHE A 40 N ILE A 32 SHEET 1 B 5 THR A 60 GLY A 63 0 SHEET 2 B 5 TYR A 66 VAL A 70 -1 O TYR A 66 N ILE A 62 SHEET 3 B 5 PHE A 102 LEU A 107 -1 O GLN A 105 N ALA A 67 SHEET 4 B 5 THR A 88 THR A 97 -1 N ILE A 93 O ARG A 106 SHEET 5 B 5 TYR A 82 TYR A 85 -1 N GLN A 83 O TYR A 90 SHEET 1 C 2 VAL A 136 ASP A 137 0 SHEET 2 C 2 LYS A 143 GLU A 144 -1 O GLU A 144 N VAL A 136 SHEET 1 D 7 ILE A 146 GLY A 151 0 SHEET 2 D 7 SER A 172 THR A 185 -1 O SER A 174 N ARG A 149 SHEET 3 D 7 GLY A 188 ASN A 195 -1 O GLU A 192 N ASN A 180 SHEET 4 D 7 LYS A 239 PRO A 244 -1 O VAL A 242 N VAL A 191 SHEET 5 D 7 LYS A 221 ILE A 232 -1 N GLY A 230 O TYR A 241 SHEET 6 D 7 GLY A 211 ASP A 216 -1 N VAL A 214 O VAL A 223 SHEET 7 D 7 ILE A 146 GLY A 151 -1 N PHE A 148 O TYR A 213 SHEET 1 E 2 THR A 156 PHE A 157 0 SHEET 2 E 2 ILE A 160 LYS A 161 -1 O ILE A 160 N PHE A 157 SHEET 1 F 9 ILE A 258 ASN A 262 0 SHEET 2 F 9 ASP A 294 SER A 298 1 O VAL A 296 N VAL A 261 SHEET 3 F 9 PHE A 316 PHE A 318 1 O ILE A 317 N PHE A 297 SHEET 4 F 9 ILE A 341 ILE A 343 1 O ASP A 342 N PHE A 316 SHEET 5 F 9 LEU A 361 ILE A 364 1 O HIS A 362 N ILE A 341 SHEET 6 F 9 LEU A 379 THR A 381 1 O LYS A 380 N LEU A 361 SHEET 7 F 9 ILE A 397 VAL A 399 1 O TYR A 398 N THR A 381 SHEET 8 F 9 ILE A 422 PHE A 424 1 O PHE A 423 N VAL A 399 SHEET 9 F 9 ALA A 444 ALA A 445 1 O ALA A 444 N PHE A 424 SHEET 1 G11 LYS A 274 ILE A 275 0 SHEET 2 G11 THR A 267 GLY A 271 -1 N GLY A 271 O LYS A 274 SHEET 3 G11 GLY A 301 LEU A 305 1 O LYS A 302 N ALA A 268 SHEET 4 G11 LYS A 323 ALA A 328 1 O THR A 325 N ILE A 303 SHEET 5 G11 THR A 348 ASN A 352 1 O ASP A 350 N TYR A 324 SHEET 6 G11 SER A 368 VAL A 371 1 O SER A 368 N VAL A 349 SHEET 7 G11 THR A 385 LEU A 388 1 O ILE A 387 N LEU A 369 SHEET 8 G11 GLY A 404 LEU A 408 1 O GLN A 407 N LEU A 388 SHEET 9 G11 GLY A 429 ASP A 432 1 O LYS A 430 N VAL A 406 SHEET 10 G11 THR A 451 THR A 453 1 O THR A 453 N LEU A 431 SHEET 11 G11 ASN A 476 VAL A 477 1 O ASN A 476 N ILE A 452 SHEET 1 H 3 LEU A 309 ASP A 310 0 SHEET 2 H 3 THR A 335 LYS A 337 1 O THR A 335 N LEU A 309 SHEET 3 H 3 LYS A 354 TYR A 355 1 O LYS A 354 N PHE A 336 SHEET 1 I11 GLN A 438 PHE A 440 0 SHEET 2 I11 SER A 461 VAL A 465 1 O SER A 464 N PHE A 440 SHEET 3 I11 VAL A 481 HIS A 486 1 O ARG A 482 N LEU A 463 SHEET 4 I11 ILE A 502 LYS A 510 1 O SER A 508 N HIS A 485 SHEET 5 I11 ARG A 579 GLU A 589 1 O ASN A 587 N ILE A 509 SHEET 6 I11 ALA A 599 LYS A 608 1 O GLN A 606 N LEU A 586 SHEET 7 I11 SER A 649 THR A 652 1 O LYS A 650 N VAL A 601 SHEET 8 I11 ALA A 668 LEU A 672 1 O ILE A 669 N SER A 649 SHEET 9 I11 ASN A 690 ALA A 693 1 O THR A 692 N VAL A 670 SHEET 10 I11 ASP A 708 THR A 712 1 O ASP A 708 N VAL A 691 SHEET 11 I11 ASN A 740 LYS A 744 1 O THR A 742 N LEU A 709 SHEET 1 J12 GLN A 438 PHE A 440 0 SHEET 2 J12 SER A 461 VAL A 465 1 O SER A 464 N PHE A 440 SHEET 3 J12 VAL A 481 HIS A 486 1 O ARG A 482 N LEU A 463 SHEET 4 J12 ILE A 502 LYS A 510 1 O SER A 508 N HIS A 485 SHEET 5 J12 ARG A 579 GLU A 589 1 O ASN A 587 N ILE A 509 SHEET 6 J12 ALA A 599 LYS A 608 1 O GLN A 606 N LEU A 586 SHEET 7 J12 ILE A 655 THR A 658 1 O MET A 656 N ALA A 607 SHEET 8 J12 SER A 676 ASP A 679 1 O SER A 677 N ALA A 657 SHEET 9 J12 LEU A 697 THR A 699 1 O PHE A 698 N LEU A 678 SHEET 10 J12 MET A 725 ALA A 729 1 O PHE A 726 N LEU A 697 SHEET 11 J12 ALA A 747 THR A 750 1 O THR A 750 N TYR A 727 SHEET 12 J12 THR A 788 GLN A 791 1 O SER A 789 N VAL A 749 SHEET 1 K11 TYR A 471 TYR A 473 0 SHEET 2 K11 LEU A 496 LEU A 498 1 O ILE A 497 N TYR A 471 SHEET 3 K11 LEU A 514 MET A 516 1 O VAL A 515 N LEU A 498 SHEET 4 K11 SER A 592 ILE A 595 1 O SER A 594 N MET A 516 SHEET 5 K11 VAL A 611 ILE A 614 1 O VAL A 611 N LEU A 593 SHEET 6 K11 SER A 661 ILE A 664 1 O SER A 663 N ILE A 614 SHEET 7 K11 ALA A 682 ILE A 685 1 O ALA A 682 N ILE A 662 SHEET 8 K11 ILE A 703 SER A 705 1 O LYS A 704 N ILE A 685 SHEET 9 K11 GLU A 733 THR A 735 1 O LEU A 734 N SER A 705 SHEET 10 K11 ILE A 753 SER A 755 1 O LYS A 754 N GLU A 733 SHEET 11 K11 ILE A 794 ALA A 796 1 O LYS A 795 N SER A 755 SHEET 1 L 2 HIS A 519 ALA A 520 0 SHEET 2 L 2 TRP A 576 GLU A 577 -1 O GLU A 577 N HIS A 519 SHEET 1 M 2 THR A 618 ASP A 622 0 SHEET 2 M 2 ILE A 640 ASP A 644 -1 O LYS A 641 N ILE A 621 SHEET 1 N 2 ILE A 629 THR A 630 0 SHEET 2 N 2 THR A 635 PHE A 636 -1 O THR A 635 N THR A 630
CISPEP 1 LEU A 761 SER A 762 0 7.35 CISPEP 2 GLY A 785 PHE A 786 0 -19.51 CISPEP 3 PHE A 786 ASP A 787 0 -20.30 CISPEP 4 GLN A 791 GLY A 792 0 0.78 CISPEP 5 ALA A 806 LEU A 807 0 29.38 CISPEP 6 ASN A 829 GLY A 830 0 3.38
CRYST1 77.758 95.926 164.869 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.012860 0.000000 0.000000 0.00000
SCALE2 0.000000 0.010425 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006065 0.00000