10 20 30 40 50 60 70 80 4NFV - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 01-NOV-13 4NFV
TITLE PREVIOUSLY DE-IONIZED HEW LYSOZYME BATCH CRYSTALLIZED IN 1.1 M MNCL2
COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C, ALLERGEN GAL D IV; COMPND 5 EC: 3.2.1.17
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: BANTAM,CHICKENS; SOURCE 4 ORGANISM_TAXID: 9031
KEYWDS HOFMEISTER SERIES, PROTEIN CATION INTERACTIONS, ESI-MASS KEYWDS 2 SPECTROMETRY, HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR P.BENAS,L.LEGRAND,M.RIES-KAUTT
REVDAT 2 13-AUG-14 4NFV 1 JRNL REVDAT 1 28-MAY-14 4NFV 0
JRNL AUTH P.BENAS,N.AUZEIL,L.LEGRAND,F.BRACHET,A.REGAZZETTI, JRNL AUTH 2 M.RIES-KAUTT JRNL TITL WEAK PROTEIN-CATIONIC CO-ION INTERACTIONS ADDRESSED BY X-RAY JRNL TITL 2 CRYSTALLOGRAPHY AND MASS SPECTROMETRY. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 2217 2014 JRNL REFN ISSN 0907-4449 JRNL PMID 25084340 JRNL DOI 10.1107/S1399004714011304
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.BENAS,L.LEGRAND,M.RIES-KAUTT REMARK 1 TITL STRONG AND SPECIFIC EFFECTS OF CATIONS ON LYSOZYME CHLORIDE REMARK 1 TITL 2 SOLUBILITY. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 58 1582 2002 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 12351866
REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 14176 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1523 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.63 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1007 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.1980 REMARK 3 BIN FREE R VALUE SET COUNT : 117 REMARK 3 BIN FREE R VALUE : 0.1970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1001 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 79 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.52000 REMARK 3 B22 (A**2) : 0.52000 REMARK 3 B33 (A**2) : -1.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.088 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.087 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.053 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.155 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1144 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1053 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1538 ; 1.778 ; 1.908 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2405 ; 0.967 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 147 ; 5.683 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 56 ;35.864 ;22.679 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 194 ;14.621 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;21.358 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 157 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1355 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 305 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 565 ; 1.754 ; 0.973 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 564 ; 1.669 ; 0.965 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 717 ; 2.689 ; 1.455 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 579 ; 6.067 ; 1.519 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 129 REMARK 3 ORIGIN FOR THE GROUP (A): 0.7690 58.9850 0.2690 REMARK 3 T TENSOR REMARK 3 T11: 0.0047 T22: 0.0190 REMARK 3 T33: 0.1023 T12: -0.0013 REMARK 3 T13: -0.0017 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 2.2507 L22: 2.2560 REMARK 3 L33: 1.3207 L12: -1.2174 REMARK 3 L13: -0.1187 L23: 0.3411 REMARK 3 S TENSOR REMARK 3 S11: -0.0262 S12: 0.0077 S13: 0.0767 REMARK 3 S21: 0.0349 S22: 0.0321 S23: -0.2060 REMARK 3 S31: -0.0391 S32: 0.0535 S33: -0.0059 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS
REMARK 4 REMARK 4 4NFV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-NOV-13. REMARK 100 THE RCSB ID CODE IS RCSB083150.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-00 REMARK 200 TEMPERATURE (KELVIN) : 295 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LURE REMARK 200 BEAMLINE : D41A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.388 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000/TRUNCATE REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 215410 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 27.445 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.37000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 193L REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PREVIOUSLY DE-IONIZED LYSOZYME, NO REMARK 280 BUFFER ADDED, 1.1 M MNCL2, PH 4.5, BATCH CRYSTALLIZATION, REMARK 280 TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.94650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.80350 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.80350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.41975 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.80350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.80350 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 9.47325 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.80350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.80350 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 28.41975 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.80350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.80350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 9.47325 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 18.94650 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 339 LIES ON A SPECIAL POSITION.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 18 CB - CG - OD1 ANGL. DEV. = 8.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 301 O REMARK 620 2 HOH A 303 O 105.3 REMARK 620 3 ASP A 52 OD2 89.4 102.4 REMARK 620 4 HOH A 305 O 154.3 83.0 112.9 REMARK 620 5 ASN A 46 OD1 38.2 131.8 60.2 144.6 REMARK 620 6 HOH A 302 O 151.5 95.6 66.9 46.1 113.4 REMARK 620 7 HOH A 304 O 103.1 134.5 43.3 86.5 65.0 48.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 303 O REMARK 620 2 GLU A 35 OE1 113.3 REMARK 620 3 HOH A 306 O 154.1 90.7 REMARK 620 4 HOH A 305 O 99.9 81.6 93.0 REMARK 620 5 HOH A 307 O 69.0 92.7 101.5 164.5 REMARK 620 N 1 2 3 4
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 203
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NEB RELATED DB: PDB REMARK 900 SAME PROTEIN AND SAME PRECIPITATING AGENT, BUT AT A HIGHER REMARK 900 CONCENTRATION. REMARK 900 RELATED ID: 4NG1 RELATED DB: PDB REMARK 900 PREVIOUSLY DE-IONIZED HEW LYSOZYME BATCH CRYSTALLIZED IN REMARK 900 1.9 M CSCL REMARK 900 RELATED ID: 4NG8 RELATED DB: PDB REMARK 900 DIALYZED HEW LYSOZYME BATCH CRYSTALLIZED IN 1.9 M CSCL AND REMARK 900 COLLECTED AT 100 K. REMARK 900 RELATED ID: 4NGI RELATED DB: PDB REMARK 900 PREVIOUSLY DE-IONIZED HEW LYSOZYME CRYSTALLIZED IN 1.0 M REMARK 900 RBCL AND COLLECTED AT 125K REMARK 900 RELATED ID: 4NGJ RELATED DB: PDB REMARK 900 DIALYZED HEW LYSOZYME BATCH CRYSTALLIZED IN 1.0 M RBCL AND REMARK 900 COLLECTED AT 100 K REMARK 900 RELATED ID: 4NGK RELATED DB: PDB REMARK 900 PREVIOUSLY DE-IONIZED HEW LYSOZYME BATCH CRYSTALLIZED IN REMARK 900 0.2 M COCL2 REMARK 900 RELATED ID: 4NGL RELATED DB: PDB REMARK 900 PREVIOUSLY DE-IONIZED HEW LYSOZYME BATCH CRYSTALLIZED IN REMARK 900 0.6 M COCL2 REMARK 900 RELATED ID: 4NGO RELATED DB: PDB REMARK 900 PREVIOUSLY DE-IONIZED HEW LYSOZYME BATCH CRYSTALLIZED IN REMARK 900 1.0 M COCL2 REMARK 900 RELATED ID: 4NGV RELATED DB: PDB REMARK 900 PREVIOUSLY DE-IONIZED HEW LYSOZYME BATCH CRYSTALLIZED IN REMARK 900 0.5 M YBCL3 REMARK 900 RELATED ID: 4NGW RELATED DB: PDB REMARK 900 DIALYZED HEW LYSOZYME BATCH CRYSTALLIZED IN 0.5 M YBCL3 AND REMARK 900 COLLECTED AT 100 K REMARK 900 RELATED ID: 4NGY RELATED DB: PDB REMARK 900 DIALYZED HEW LYSOZYME BATCH CRYSTALLIZED IN 0.75 M YBCL3 REMARK 900 AND COLLECTED AT 100 K REMARK 900 RELATED ID: 4NGZ RELATED DB: PDB REMARK 900 PREVIOUSLY DE-IONIZED HEW LYSOZYME CRYSTALLIZED IN 0.5 M REMARK 900 YBCL3/30% (V/V) GLYCEROL AND COLLECTED AT 125K
DBREF 4NFV A 1 129 UNP P00698 LYSC_CHICK 19 147
SEQRES 1 A 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 A 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 A 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 A 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 A 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 A 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 A 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 A 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 A 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 A 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU
HET MN A 201 3 HET MN A 202 1 HET CL A 203 1
HETNAM MN MANGANESE (II) ION HETNAM CL CHLORIDE ION
FORMUL 2 MN 2(MN 2+) FORMUL 4 CL CL 1- FORMUL 5 HOH *79(H2 O)
HELIX 1 1 GLY A 4 HIS A 15 1 12 HELIX 2 2 ASN A 19 TYR A 23 5 5 HELIX 3 3 SER A 24 ASN A 37 1 14 HELIX 4 4 PRO A 79 SER A 85 5 7 HELIX 5 5 ILE A 88 SER A 100 1 13 HELIX 6 6 ASN A 103 ALA A 107 5 5 HELIX 7 7 TRP A 108 CYS A 115 1 8 HELIX 8 8 ASP A 119 ARG A 125 5 7
SHEET 1 A 3 THR A 43 ARG A 45 0 SHEET 2 A 3 THR A 51 TYR A 53 -1 O ASP A 52 N ASN A 44 SHEET 3 A 3 ILE A 58 ASN A 59 -1 O ILE A 58 N TYR A 53
SSBOND 1 CYS A 6 CYS A 127 1555 1555 1.96 SSBOND 2 CYS A 30 CYS A 115 1555 1555 2.04 SSBOND 3 CYS A 64 CYS A 80 1555 1555 2.02 SSBOND 4 CYS A 76 CYS A 94 1555 1555 2.03
LINK MN C MN A 201 O HOH A 301 1555 1555 1.98 LINK MN C MN A 201 O HOH A 303 1555 1555 2.01 LINK OD2 ASP A 52 MN C MN A 201 1555 1555 2.02 LINK MN A MN A 201 O HOH A 305 1555 1555 2.15 LINK MN B MN A 201 O HOH A 301 1555 1555 2.16 LINK MN MN A 202 O HOH A 303 1555 1555 2.20 LINK OD1 ASN A 46 MN B MN A 201 1555 1555 2.14 LINK OD2 ASP A 52 MN B MN A 201 1555 1555 2.20 LINK OD2 ASP A 52 MN A MN A 201 1555 1555 2.32 LINK MN A MN A 201 O HOH A 302 1555 1555 2.30 LINK OE1 GLU A 35 MN MN A 202 1555 1555 2.29 LINK MN C MN A 201 O HOH A 305 1555 1555 2.35 LINK MN A MN A 201 O HOH A 304 1555 1555 2.45 LINK MN MN A 202 O HOH A 306 1555 1555 1.93 LINK MN MN A 202 O HOH A 305 1555 1555 1.56 LINK MN MN A 202 O HOH A 307 1555 1555 2.74
SITE 1 AC1 8 ASN A 46 ASP A 52 MN A 202 HOH A 301 SITE 2 AC1 8 HOH A 302 HOH A 303 HOH A 304 HOH A 305 SITE 1 AC2 6 GLU A 35 MN A 201 HOH A 303 HOH A 305 SITE 2 AC2 6 HOH A 306 HOH A 307 SITE 1 AC3 2 TYR A 23 ASN A 113
CRYST1 79.607 79.607 37.893 90.00 90.00 90.00 P 43 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.012562 0.000000 0.000000 0.00000
SCALE2 0.000000 0.012562 0.000000 0.00000
SCALE3 0.000000 0.000000 0.026390 0.00000