10 20 30 40 50 60 70 80 4F2R - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE/DNA 08-MAY-12 4F2R
TITLE DNA POLYMERASE I LARGE FRAGMENT COMPLEX 3
COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: UNP RESIDUES 287-878; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DOC))-3'); COMPND 10 CHAIN: B, E; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: DNA PRIMER STRAND; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(*CP*AP*TP*GP*GP*GP*AP*GP*TP*CP*AP*GP*G)-3'); COMPND 15 CHAIN: C, F; COMPND 16 ENGINEERED: YES; COMPND 17 OTHER_DETAILS: DNA TEMPLATE STRAND
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS KAUSTOPHILUS; SOURCE 3 ORGANISM_TAXID: 235909; SOURCE 4 GENE: POLA, GK2730; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET30A; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630
KEYWDS DNA POLYMERASE I, PROTEIN-DNA COMPLEX, CLOSED FORM, TRANSFERASE-DNA KEYWDS 2 COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR W.WANG,L.S.BEESE
REVDAT 1 24-JUL-13 4F2R 0
JRNL AUTH W.WANG,H.W.HELLINGA,L.S.BEESE JRNL TITL STRUCTURES OF A HIGH-FIDELITY DNA POLYMERASE JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH W.WANG,H.W.HELLINGA,L.S.BEESE REMARK 1 TITL STRUCTURAL EVIDENCE FOR THE RARE TAUTOMER HYPOTHESIS OF REMARK 1 TITL 2 SPONTANEOUS MUTAGENESIS. REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 108 17644 2011 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 22006298 REMARK 1 DOI 10.1073/PNAS.1114496108
REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1026) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 184317 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.510 REMARK 3 FREE R VALUE TEST SET COUNT : 8311 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.9880 - 5.0599 1.00 6389 330 0.1864 0.1996 REMARK 3 2 5.0599 - 4.0180 1.00 6197 321 0.1413 0.1634 REMARK 3 3 4.0180 - 3.5107 1.00 6139 314 0.1487 0.1536 REMARK 3 4 3.5107 - 3.1899 1.00 6085 318 0.1591 0.1716 REMARK 3 5 3.1899 - 2.9614 1.00 6096 304 0.1797 0.1971 REMARK 3 6 2.9614 - 2.7869 1.00 6090 284 0.1857 0.2282 REMARK 3 7 2.7869 - 2.6474 1.00 6075 271 0.1749 0.2031 REMARK 3 8 2.6474 - 2.5322 1.00 6100 254 0.1698 0.1766 REMARK 3 9 2.5322 - 2.4347 1.00 6089 253 0.1618 0.1882 REMARK 3 10 2.4347 - 2.3507 1.00 6061 250 0.1607 0.1851 REMARK 3 11 2.3507 - 2.2772 0.99 6074 227 0.1538 0.1947 REMARK 3 12 2.2772 - 2.2121 0.99 6041 238 0.1599 0.1895 REMARK 3 13 2.2121 - 2.1539 0.99 6056 264 0.1598 0.1908 REMARK 3 14 2.1539 - 2.1014 0.99 6018 247 0.1609 0.1780 REMARK 3 15 2.1014 - 2.0536 0.99 6035 231 0.1657 0.1995 REMARK 3 16 2.0536 - 2.0099 0.99 6037 212 0.1667 0.1802 REMARK 3 17 2.0099 - 1.9697 0.98 6025 182 0.1745 0.2114 REMARK 3 18 1.9697 - 1.9325 0.98 5839 307 0.1786 0.2199 REMARK 3 19 1.9325 - 1.8980 0.98 5861 309 0.1777 0.2058 REMARK 3 20 1.8980 - 1.8659 0.96 5750 303 0.1835 0.2173 REMARK 3 21 1.8659 - 1.8358 0.96 5724 301 0.1866 0.2314 REMARK 3 22 1.8358 - 1.8075 0.95 5711 300 0.1862 0.2202 REMARK 3 23 1.8075 - 1.7809 0.95 5723 302 0.1865 0.2085 REMARK 3 24 1.7809 - 1.7559 0.94 5609 295 0.1936 0.2378 REMARK 3 25 1.7559 - 1.7321 0.93 5619 296 0.2013 0.2299 REMARK 3 26 1.7321 - 1.7096 0.91 5464 287 0.2039 0.2441 REMARK 3 27 1.7096 - 1.6883 0.91 5421 285 0.2183 0.2497 REMARK 3 28 1.6883 - 1.6679 0.89 5334 281 0.2233 0.2535 REMARK 3 29 1.6679 - 1.6485 0.88 5282 278 0.2354 0.2498 REMARK 3 30 1.6485 - 1.6300 0.85 5062 267 0.2473 0.2660 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 10635 REMARK 3 ANGLE : 1.375 14600 REMARK 3 CHIRALITY : 0.083 1652 REMARK 3 PLANARITY : 0.007 1730 REMARK 3 DIHEDRAL : 15.169 4139 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain 'A' and (resseq 299:522) REMARK 3 ORIGIN FOR THE GROUP (A): 117.2879 -51.7632 28.8197 REMARK 3 T TENSOR REMARK 3 T11: 0.4126 T22: 0.1690 REMARK 3 T33: 0.2099 T12: 0.0420 REMARK 3 T13: 0.0438 T23: 0.0644 REMARK 3 L TENSOR REMARK 3 L11: 1.0239 L22: 1.6632 REMARK 3 L33: 1.6964 L12: -0.0575 REMARK 3 L13: 0.1589 L23: 1.1549 REMARK 3 S TENSOR REMARK 3 S11: -0.0239 S12: 0.1315 S13: -0.1377 REMARK 3 S21: 0.4542 S22: 0.0251 S23: 0.2699 REMARK 3 S31: 0.4815 S32: 0.0685 S33: -0.0101 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain 'A' and (resseq 523:604) REMARK 3 ORIGIN FOR THE GROUP (A): 104.0571 -23.6108 49.3702 REMARK 3 T TENSOR REMARK 3 T11: 0.3947 T22: 0.2357 REMARK 3 T33: 0.4513 T12: -0.0111 REMARK 3 T13: 0.0490 T23: -0.0667 REMARK 3 L TENSOR REMARK 3 L11: 1.1220 L22: 4.2033 REMARK 3 L33: 0.7525 L12: -0.7303 REMARK 3 L13: -0.0447 L23: 0.6620 REMARK 3 S TENSOR REMARK 3 S11: -0.0710 S12: -0.1289 S13: -0.0164 REMARK 3 S21: -0.0274 S22: -0.1998 S23: 1.1245 REMARK 3 S31: 0.1959 S32: -0.2034 S33: 0.2774 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: chain 'A' and (resseq 605:876) REMARK 3 ORIGIN FOR THE GROUP (A): 129.6076 -26.3436 37.8184 REMARK 3 T TENSOR REMARK 3 T11: 0.1886 T22: 0.3170 REMARK 3 T33: 0.1638 T12: 0.0188 REMARK 3 T13: -0.0426 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.9079 L22: 2.1934 REMARK 3 L33: 2.6376 L12: 0.0192 REMARK 3 L13: -0.5387 L23: 0.8033 REMARK 3 S TENSOR REMARK 3 S11: -0.0480 S12: -0.2359 S13: 0.1410 REMARK 3 S21: 0.2783 S22: 0.1675 S23: -0.2301 REMARK 3 S31: -0.0017 S32: 0.4974 S33: -0.0829 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: chain 'D' and (resseq 294:467) REMARK 3 ORIGIN FOR THE GROUP (A): 137.0385 -47.7216 -9.2526 REMARK 3 T TENSOR REMARK 3 T11: 0.1133 T22: 0.1052 REMARK 3 T33: 0.1712 T12: 0.0278 REMARK 3 T13: -0.0215 T23: -0.0288 REMARK 3 L TENSOR REMARK 3 L11: 1.9306 L22: 1.6298 REMARK 3 L33: 1.5024 L12: -0.2346 REMARK 3 L13: 0.5426 L23: 0.5517 REMARK 3 S TENSOR REMARK 3 S11: 0.0992 S12: 0.1310 S13: -0.3739 REMARK 3 S21: -0.0331 S22: 0.0314 S23: -0.0919 REMARK 3 S31: 0.2160 S32: 0.1615 S33: -0.1001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: chain 'D' and (resseq 468:604) REMARK 3 ORIGIN FOR THE GROUP (A): 121.9364 -20.1864 -31.0137 REMARK 3 T TENSOR REMARK 3 T11: 0.2109 T22: 0.2424 REMARK 3 T33: 0.1341 T12: 0.0252 REMARK 3 T13: 0.0086 T23: 0.0469 REMARK 3 L TENSOR REMARK 3 L11: 0.8239 L22: 1.2349 REMARK 3 L33: 0.7785 L12: 0.3539 REMARK 3 L13: -0.4592 L23: -0.2286 REMARK 3 S TENSOR REMARK 3 S11: -0.0078 S12: 0.3729 S13: 0.1479 REMARK 3 S21: -0.3971 S22: 0.1463 S23: 0.0983 REMARK 3 S31: -0.0871 S32: -0.2086 S33: -0.1173 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: chain 'D' and (resseq 605:876) REMARK 3 ORIGIN FOR THE GROUP (A): 117.4744 -17.6986 -8.6336 REMARK 3 T TENSOR REMARK 3 T11: 0.0790 T22: 0.1107 REMARK 3 T33: 0.1183 T12: 0.0108 REMARK 3 T13: 0.0081 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 0.9216 L22: 0.9906 REMARK 3 L33: 0.9725 L12: -0.0997 REMARK 3 L13: -0.0241 L23: 0.4410 REMARK 3 S TENSOR REMARK 3 S11: 0.0384 S12: 0.0981 S13: 0.1897 REMARK 3 S21: -0.0781 S22: -0.0546 S23: 0.0481 REMARK 3 S31: -0.1371 S32: -0.0737 S33: 0.0145 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: chain 'B' and (resseq 21:29) REMARK 3 ORIGIN FOR THE GROUP (A): 107.9976 -27.7813 40.4934 REMARK 3 T TENSOR REMARK 3 T11: 0.3122 T22: 0.1372 REMARK 3 T33: 0.3484 T12: -0.0067 REMARK 3 T13: -0.0387 T23: -0.0453 REMARK 3 L TENSOR REMARK 3 L11: 7.0659 L22: 2.4392 REMARK 3 L33: 2.4086 L12: -0.2043 REMARK 3 L13: 0.8177 L23: -0.4857 REMARK 3 S TENSOR REMARK 3 S11: -0.5451 S12: -0.0055 S13: 0.3243 REMARK 3 S21: -0.2308 S22: 0.1632 S23: 0.6167 REMARK 3 S31: -0.1520 S32: -0.2148 S33: 0.4388 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: chain 'C' and (resseq 2:12) REMARK 3 ORIGIN FOR THE GROUP (A): 109.2527 -27.7493 38.2664 REMARK 3 T TENSOR REMARK 3 T11: 0.1892 T22: 0.1758 REMARK 3 T33: 0.2899 T12: -0.0003 REMARK 3 T13: 0.0094 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 5.1505 L22: 2.6156 REMARK 3 L33: 2.9714 L12: 0.3729 REMARK 3 L13: -2.1543 L23: 0.9711 REMARK 3 S TENSOR REMARK 3 S11: 0.0233 S12: -0.0938 S13: 0.2702 REMARK 3 S21: -0.0122 S22: -0.2033 S23: 0.6913 REMARK 3 S31: 0.0501 S32: -0.1037 S33: 0.1917 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: chain 'E' and (resseq 21:29) REMARK 3 ORIGIN FOR THE GROUP (A): 129.0683 -18.4800 -27.3436 REMARK 3 T TENSOR REMARK 3 T11: 0.1893 T22: 0.1101 REMARK 3 T33: 0.2057 T12: 0.0303 REMARK 3 T13: 0.0410 T23: 0.0303 REMARK 3 L TENSOR REMARK 3 L11: 4.7156 L22: 1.7120 REMARK 3 L33: 5.8263 L12: 1.0376 REMARK 3 L13: -2.1378 L23: -0.1622 REMARK 3 S TENSOR REMARK 3 S11: -0.1820 S12: 0.4640 S13: 0.1238 REMARK 3 S21: -0.0697 S22: 0.2068 S23: -0.3776 REMARK 3 S31: 0.1017 S32: -0.1650 S33: -0.0696 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: chain 'F' and (resseq 1:12) REMARK 3 ORIGIN FOR THE GROUP (A): 130.5878 -17.3622 -24.2705 REMARK 3 T TENSOR REMARK 3 T11: 0.2213 T22: 0.1712 REMARK 3 T33: 0.2213 T12: -0.0097 REMARK 3 T13: 0.1114 T23: 0.0252 REMARK 3 L TENSOR REMARK 3 L11: 1.1233 L22: 0.8474 REMARK 3 L33: 2.1068 L12: -0.6178 REMARK 3 L13: -0.6101 L23: -0.6290 REMARK 3 S TENSOR REMARK 3 S11: 0.2189 S12: 0.1956 S13: 0.3037 REMARK 3 S21: -0.3396 S22: 0.0199 S23: -0.5067 REMARK 3 S31: -0.4251 S32: 0.0381 S33: -0.2479 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 4F2R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAY-12. REMARK 100 THE RCSB ID CODE IS RCSB072381.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 190429 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.000 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.50600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.380 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2HVI WITH INSERTION SITE BASE PAIR, REMARK 200 METAL IONS, AND PROTEIN RESIDUES 681-721 DELETED REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 47%-49% SATURATED AMMONIUM SULFATE, REMARK 280 2.5% MPD, 10MM MGSO4, 100MM MES, PH 5.8, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 290K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 46.61000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.47500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.24000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.47500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.61000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.24000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 285 REMARK 465 GLU A 286 REMARK 465 SER A 287 REMARK 465 PRO A 288 REMARK 465 SER A 289 REMARK 465 SER A 290 REMARK 465 GLU A 291 REMARK 465 GLU A 292 REMARK 465 GLU A 293 REMARK 465 LYS A 294 REMARK 465 PRO A 295 REMARK 465 LEU A 296 REMARK 465 ALA A 297 REMARK 465 LYS A 298 REMARK 465 MET D 285 REMARK 465 GLU D 286 REMARK 465 SER D 287 REMARK 465 PRO D 288 REMARK 465 SER D 289 REMARK 465 SER D 290 REMARK 465 GLU D 291 REMARK 465 GLU D 292 REMARK 465 GLU D 293 REMARK 465 DC C 0 REMARK 465 DA C 1 REMARK 465 DC F 0
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS D 298 CG CD CE NZ REMARK 470 DA F 1 P OP1 OP2
REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 THR D 857 CA CB OG1 CG2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H3 DT F 2 O HOH F 145 1.53 REMARK 500 HE ARG D 596 O HOH D 1090 1.57 REMARK 500 HE ARG A 596 O HOH A 1040 1.57 REMARK 500 O HOH D 1600 O HOH D 1604 1.90 REMARK 500 O HOH A 1238 O HOH A 1386 1.94 REMARK 500 O HOH D 1169 O HOH D 1444 1.95 REMARK 500 O HOH A 1427 O HOH A 1429 1.96 REMARK 500 O HOH D 1522 O HOH D 1543 1.96 REMARK 500 O HOH D 1531 O HOH F 144 1.97 REMARK 500 O HOH D 1209 O HOH D 1311 1.97 REMARK 500 O HOH D 1531 O HOH E 213 2.00 REMARK 500 O HOH D 1307 O HOH D 1370 2.01 REMARK 500 O HOH D 1507 O HOH D 1512 2.03 REMARK 500 O HOH A 1215 O HOH A 1250 2.05 REMARK 500 O HOH A 1182 O HOH A 1389 2.05 REMARK 500 O HOH E 210 O HOH E 222 2.06 REMARK 500 O HOH A 1188 O HOH A 1258 2.07 REMARK 500 O HOH A 1154 O HOH D 1372 2.07 REMARK 500 O HOH D 1323 O HOH D 1491 2.09 REMARK 500 O HOH D 1424 O HOH D 1477 2.10 REMARK 500 O HOH A 1069 O HOH A 1391 2.10 REMARK 500 O HOH D 1599 O HOH D 1600 2.12 REMARK 500 OD2 ASP A 463 O HOH A 1356 2.13 REMARK 500 O HOH D 1369 O HOH D 1597 2.13 REMARK 500 OE2 GLU A 734 O HOH A 1422 2.13 REMARK 500 O HOH D 1281 O HOH D 1633 2.14 REMARK 500 O HOH D 1291 O HOH D 1339 2.15 REMARK 500 O HOH A 1120 O HOH A 1385 2.16 REMARK 500 O4' DG F 12 O HOH F 143 2.16 REMARK 500 O HOH A 1287 O HOH A 1328 2.16 REMARK 500 O HOH D 1344 O HOH D 1450 2.16 REMARK 500 O HOH D 1463 O HOH D 1527 2.17 REMARK 500 O HOH C 136 O HOH C 144 2.17 REMARK 500 O HOH A 1290 O HOH A 1389 2.18 REMARK 500 OE2 GLU A 658 O HOH A 1116 2.19 REMARK 500 O HOH D 1258 O HOH D 1479 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH D 1226 O HOH D 1393 4445 2.16 REMARK 500 O HOH A 1345 O HOH D 1576 2755 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU D 831 CB GLU D 831 CG -0.130 REMARK 500 DA B 25 O3' DA B 25 C3' -0.050 REMARK 500 DC C 9 O3' DC C 9 C3' -0.038 REMARK 500 DA E 25 O3' DA E 25 C3' -0.043 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 578 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG D 578 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG D 578 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG D 843 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG D 859 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG D 859 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 DC B 21 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DT B 23 O4' - C1' - N1 ANGL. DEV. = -6.1 DEGREES REMARK 500 DC B 26 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DT C 2 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG C 3 O5' - P - OP1 ANGL. DEV. = -7.6 DEGREES REMARK 500 DT C 8 O4' - C1' - N1 ANGL. DEV. = -5.9 DEGREES REMARK 500 DC E 21 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT E 23 O4' - C1' - N1 ANGL. DEV. = -7.7 DEGREES REMARK 500 DC E 26 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DG F 4 O4' - C1' - N9 ANGL. DEV. = 7.2 DEGREES REMARK 500 DG F 5 O4' - C4' - C3' ANGL. DEV. = -2.5 DEGREES REMARK 500 DT F 8 O4' - C1' - N1 ANGL. DEV. = -5.2 DEGREES REMARK 500 DG F 12 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 372 62.40 62.41 REMARK 500 ASP A 402 96.50 -166.26 REMARK 500 ALA A 421 38.35 -81.28 REMARK 500 ILE A 588 -71.49 -106.94 REMARK 500 LEU A 610 -50.38 -126.25 REMARK 500 ILE A 628 -27.82 -141.62 REMARK 500 HIS A 768 22.57 80.77 REMARK 500 HIS A 829 -52.77 71.17 REMARK 500 ALA D 297 -139.06 -96.48 REMARK 500 ASP D 372 60.66 60.20 REMARK 500 ASP D 402 96.48 -162.66 REMARK 500 ASP D 408 16.67 -141.76 REMARK 500 ALA D 421 45.25 -88.57 REMARK 500 GLN D 524 146.12 -171.31 REMARK 500 ILE D 588 -74.84 -106.23 REMARK 500 LEU D 610 -52.18 -126.63 REMARK 500 ILE D 628 -25.92 -143.06 REMARK 500 HIS D 768 23.45 80.44 REMARK 500 HIS D 829 -55.47 74.64 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CTP D 901 O2B REMARK 620 2 CTP D 901 O2A 86.5 REMARK 620 3 CTP D 901 O2G 92.3 90.5 REMARK 620 4 HOH D1642 O 99.5 173.3 86.5 REMARK 620 5 HOH D1641 O 158.3 82.6 69.3 90.8 REMARK 620 6 HOH D1643 O 113.0 90.7 154.8 89.6 85.9 REMARK 620 N 1 2 3 4 5
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CTP A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SUC A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CTP D 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SUC D 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 906
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4F2S RELATED DB: PDB REMARK 900 RELATED ID: 4F3O RELATED DB: PDB REMARK 900 RELATED ID: 4F4K RELATED DB: PDB REMARK 900 RELATED ID: 4F8R RELATED DB: PDB REMARK 900 RELATED ID: 4EZ6 RELATED DB: PDB REMARK 900 RELATED ID: 4EZ9 RELATED DB: PDB
REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT THE PROTEIN WAS ISOLATED FROM A STRAIN OF REMARK 999 GEOBACILLUS SPECIES WHOSE SEQUENCE IS NOT AVAILABLE IN THE UNIPROT REMARK 999 DATABASE. IT DIFFERS FROM UNP Q5KWC1 BY THIS SINGLE RESIDUE
DBREF 4F2R A 285 876 UNP Q5KWC1 Q5KWC1_GEOKA 287 878 DBREF 4F2R D 285 876 UNP Q5KWC1 Q5KWC1_GEOKA 287 878 DBREF 4F2R B 21 29 PDB 4F2R 4F2R 21 29 DBREF 4F2R E 21 29 PDB 4F2R 4F2R 21 29 DBREF 4F2R C 0 12 PDB 4F2R 4F2R 0 12 DBREF 4F2R F 0 12 PDB 4F2R 4F2R 0 12
SEQADV 4F2R ALA A 598 UNP Q5KWC1 ASP 600 ENGINEERED MUTATION SEQADV 4F2R TYR A 710 UNP Q5KWC1 PHE 712 ENGINEERED MUTATION SEQADV 4F2R HIS A 823 UNP Q5KWC1 ARG 825 SEE REMARK 999 SEQADV 4F2R ALA D 598 UNP Q5KWC1 ASP 600 ENGINEERED MUTATION SEQADV 4F2R TYR D 710 UNP Q5KWC1 PHE 712 ENGINEERED MUTATION SEQADV 4F2R HIS D 823 UNP Q5KWC1 ARG 825 SEE REMARK 999
SEQRES 1 A 592 MET GLU SER PRO SER SER GLU GLU GLU LYS PRO LEU ALA SEQRES 2 A 592 LYS MET ALA PHE THR LEU ALA ASP ARG VAL THR GLU GLU SEQRES 3 A 592 MET LEU ALA ASP LYS ALA ALA LEU VAL VAL GLU VAL VAL SEQRES 4 A 592 GLU GLU ASN TYR HIS ASP ALA PRO ILE VAL GLY ILE ALA SEQRES 5 A 592 VAL VAL ASN GLU HIS GLY ARG PHE PHE LEU ARG PRO GLU SEQRES 6 A 592 THR ALA LEU ALA ASP PRO GLN PHE VAL ALA TRP LEU GLY SEQRES 7 A 592 ASP GLU THR LYS LYS LYS SER MET PHE ASP SER LYS ARG SEQRES 8 A 592 ALA ALA VAL ALA LEU LYS TRP LYS GLY ILE GLU LEU CYS SEQRES 9 A 592 GLY VAL SER PHE ASP LEU LEU LEU ALA ALA TYR LEU LEU SEQRES 10 A 592 ASP PRO ALA GLN GLY VAL ASP ASP VAL ALA ALA ALA ALA SEQRES 11 A 592 LYS MET LYS GLN TYR GLU ALA VAL ARG PRO ASP GLU ALA SEQRES 12 A 592 VAL TYR GLY LYS GLY ALA LYS ARG ALA VAL PRO ASP GLU SEQRES 13 A 592 PRO VAL LEU ALA GLU HIS LEU VAL ARG LYS ALA ALA ALA SEQRES 14 A 592 ILE TRP GLU LEU GLU ARG PRO PHE LEU ASP GLU LEU ARG SEQRES 15 A 592 ARG ASN GLU GLN ASP ARG LEU LEU VAL GLU LEU GLU GLN SEQRES 16 A 592 PRO LEU SER SER ILE LEU ALA GLU MET GLU PHE ALA GLY SEQRES 17 A 592 VAL LYS VAL ASP THR LYS ARG LEU GLU GLN MET GLY LYS SEQRES 18 A 592 GLU LEU ALA GLU GLN LEU GLY THR VAL GLU GLN ARG ILE SEQRES 19 A 592 TYR GLU LEU ALA GLY GLN GLU PHE ASN ILE ASN SER PRO SEQRES 20 A 592 LYS GLN LEU GLY VAL ILE LEU PHE GLU LYS LEU GLN LEU SEQRES 21 A 592 PRO VAL LEU LYS LYS THR LYS THR GLY TYR SER THR SER SEQRES 22 A 592 ALA ASP VAL LEU GLU LYS LEU ALA PRO TYR HIS GLU ILE SEQRES 23 A 592 VAL GLU ASN ILE LEU HIS TYR ARG GLN LEU GLY LYS LEU SEQRES 24 A 592 GLN SER THR TYR ILE GLU GLY LEU LEU LYS VAL VAL ARG SEQRES 25 A 592 PRO ALA THR LYS LYS VAL HIS THR ILE PHE ASN GLN ALA SEQRES 26 A 592 LEU THR GLN THR GLY ARG LEU SER SER THR GLU PRO ASN SEQRES 27 A 592 LEU GLN ASN ILE PRO ILE ARG LEU GLU GLU GLY ARG LYS SEQRES 28 A 592 ILE ARG GLN ALA PHE VAL PRO SER GLU SER ASP TRP LEU SEQRES 29 A 592 ILE PHE ALA ALA ASP TYR SER GLN ILE GLU LEU ARG VAL SEQRES 30 A 592 LEU ALA HIS ILE ALA GLU ASP ASP ASN LEU MET GLU ALA SEQRES 31 A 592 PHE ARG ARG ASP LEU ASP ILE HIS THR LYS THR ALA MET SEQRES 32 A 592 ASP ILE PHE GLN VAL SER GLU ASP GLU VAL THR PRO ASN SEQRES 33 A 592 MET ARG ARG GLN ALA LYS ALA VAL ASN TYR GLY ILE VAL SEQRES 34 A 592 TYR GLY ILE SER ASP TYR GLY LEU ALA GLN ASN LEU ASN SEQRES 35 A 592 ILE SER ARG LYS GLU ALA ALA GLU PHE ILE GLU ARG TYR SEQRES 36 A 592 PHE GLU SER PHE PRO GLY VAL LYS ARG TYR MET GLU ASN SEQRES 37 A 592 ILE VAL GLN GLU ALA LYS GLN LYS GLY TYR VAL THR THR SEQRES 38 A 592 LEU LEU HIS ARG ARG ARG TYR LEU PRO ASP ILE THR SER SEQRES 39 A 592 ARG ASN PHE ASN VAL ARG SER PHE ALA GLU ARG MET ALA SEQRES 40 A 592 MET ASN THR PRO ILE GLN GLY SER ALA ALA ASP ILE ILE SEQRES 41 A 592 LYS LYS ALA MET ILE ASP LEU ASN ALA ARG LEU LYS GLU SEQRES 42 A 592 GLU ARG LEU GLN ALA HIS LEU LEU LEU GLN VAL HIS ASP SEQRES 43 A 592 GLU LEU ILE LEU GLU ALA PRO LYS GLU GLU MET GLU ARG SEQRES 44 A 592 LEU CYS ARG LEU VAL PRO GLU VAL MET GLU GLN ALA VAL SEQRES 45 A 592 THR LEU ARG VAL PRO LEU LYS VAL ASP TYR HIS TYR GLY SEQRES 46 A 592 SER THR TRP TYR ASP ALA LYS SEQRES 1 D 592 MET GLU SER PRO SER SER GLU GLU GLU LYS PRO LEU ALA SEQRES 2 D 592 LYS MET ALA PHE THR LEU ALA ASP ARG VAL THR GLU GLU SEQRES 3 D 592 MET LEU ALA ASP LYS ALA ALA LEU VAL VAL GLU VAL VAL SEQRES 4 D 592 GLU GLU ASN TYR HIS ASP ALA PRO ILE VAL GLY ILE ALA SEQRES 5 D 592 VAL VAL ASN GLU HIS GLY ARG PHE PHE LEU ARG PRO GLU SEQRES 6 D 592 THR ALA LEU ALA ASP PRO GLN PHE VAL ALA TRP LEU GLY SEQRES 7 D 592 ASP GLU THR LYS LYS LYS SER MET PHE ASP SER LYS ARG SEQRES 8 D 592 ALA ALA VAL ALA LEU LYS TRP LYS GLY ILE GLU LEU CYS SEQRES 9 D 592 GLY VAL SER PHE ASP LEU LEU LEU ALA ALA TYR LEU LEU SEQRES 10 D 592 ASP PRO ALA GLN GLY VAL ASP ASP VAL ALA ALA ALA ALA SEQRES 11 D 592 LYS MET LYS GLN TYR GLU ALA VAL ARG PRO ASP GLU ALA SEQRES 12 D 592 VAL TYR GLY LYS GLY ALA LYS ARG ALA VAL PRO ASP GLU SEQRES 13 D 592 PRO VAL LEU ALA GLU HIS LEU VAL ARG LYS ALA ALA ALA SEQRES 14 D 592 ILE TRP GLU LEU GLU ARG PRO PHE LEU ASP GLU LEU ARG SEQRES 15 D 592 ARG ASN GLU GLN ASP ARG LEU LEU VAL GLU LEU GLU GLN SEQRES 16 D 592 PRO LEU SER SER ILE LEU ALA GLU MET GLU PHE ALA GLY SEQRES 17 D 592 VAL LYS VAL ASP THR LYS ARG LEU GLU GLN MET GLY LYS SEQRES 18 D 592 GLU LEU ALA GLU GLN LEU GLY THR VAL GLU GLN ARG ILE SEQRES 19 D 592 TYR GLU LEU ALA GLY GLN GLU PHE ASN ILE ASN SER PRO SEQRES 20 D 592 LYS GLN LEU GLY VAL ILE LEU PHE GLU LYS LEU GLN LEU SEQRES 21 D 592 PRO VAL LEU LYS LYS THR LYS THR GLY TYR SER THR SER SEQRES 22 D 592 ALA ASP VAL LEU GLU LYS LEU ALA PRO TYR HIS GLU ILE SEQRES 23 D 592 VAL GLU ASN ILE LEU HIS TYR ARG GLN LEU GLY LYS LEU SEQRES 24 D 592 GLN SER THR TYR ILE GLU GLY LEU LEU LYS VAL VAL ARG SEQRES 25 D 592 PRO ALA THR LYS LYS VAL HIS THR ILE PHE ASN GLN ALA SEQRES 26 D 592 LEU THR GLN THR GLY ARG LEU SER SER THR GLU PRO ASN SEQRES 27 D 592 LEU GLN ASN ILE PRO ILE ARG LEU GLU GLU GLY ARG LYS SEQRES 28 D 592 ILE ARG GLN ALA PHE VAL PRO SER GLU SER ASP TRP LEU SEQRES 29 D 592 ILE PHE ALA ALA ASP TYR SER GLN ILE GLU LEU ARG VAL SEQRES 30 D 592 LEU ALA HIS ILE ALA GLU ASP ASP ASN LEU MET GLU ALA SEQRES 31 D 592 PHE ARG ARG ASP LEU ASP ILE HIS THR LYS THR ALA MET SEQRES 32 D 592 ASP ILE PHE GLN VAL SER GLU ASP GLU VAL THR PRO ASN SEQRES 33 D 592 MET ARG ARG GLN ALA LYS ALA VAL ASN TYR GLY ILE VAL SEQRES 34 D 592 TYR GLY ILE SER ASP TYR GLY LEU ALA GLN ASN LEU ASN SEQRES 35 D 592 ILE SER ARG LYS GLU ALA ALA GLU PHE ILE GLU ARG TYR SEQRES 36 D 592 PHE GLU SER PHE PRO GLY VAL LYS ARG TYR MET GLU ASN SEQRES 37 D 592 ILE VAL GLN GLU ALA LYS GLN LYS GLY TYR VAL THR THR SEQRES 38 D 592 LEU LEU HIS ARG ARG ARG TYR LEU PRO ASP ILE THR SER SEQRES 39 D 592 ARG ASN PHE ASN VAL ARG SER PHE ALA GLU ARG MET ALA SEQRES 40 D 592 MET ASN THR PRO ILE GLN GLY SER ALA ALA ASP ILE ILE SEQRES 41 D 592 LYS LYS ALA MET ILE ASP LEU ASN ALA ARG LEU LYS GLU SEQRES 42 D 592 GLU ARG LEU GLN ALA HIS LEU LEU LEU GLN VAL HIS ASP SEQRES 43 D 592 GLU LEU ILE LEU GLU ALA PRO LYS GLU GLU MET GLU ARG SEQRES 44 D 592 LEU CYS ARG LEU VAL PRO GLU VAL MET GLU GLN ALA VAL SEQRES 45 D 592 THR LEU ARG VAL PRO LEU LYS VAL ASP TYR HIS TYR GLY SEQRES 46 D 592 SER THR TRP TYR ASP ALA LYS SEQRES 1 B 9 DC DC DT DG DA DC DT DC DOC SEQRES 1 C 13 DC DA DT DG DG DG DA DG DT DC DA DG DG SEQRES 1 E 9 DC DC DT DG DA DC DT DC DOC SEQRES 1 F 13 DC DA DT DG DG DG DA DG DT DC DA DG DG
MODRES 4F2R DOC B 29 DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE MODRES 4F2R DOC E 29 DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE
HET DOC B 29 28 HET DOC E 29 28 HET CTP A 901 41 HET SUC A 902 45 HET CTP D 901 41 HET MG D 902 1 HET SO4 D 903 5 HET SUC D 904 45 HET SO4 D 905 5 HET SO4 D 906 5
HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM CTP CYTIDINE-5'-TRIPHOSPHATE HETNAM SUC SUCROSE HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION
FORMUL 3 DOC 2(C9 H14 N3 O6 P) FORMUL 7 CTP 2(C9 H16 N3 O14 P3) FORMUL 8 SUC 2(C12 H22 O11) FORMUL 10 MG MG 2+ FORMUL 11 SO4 3(O4 S 2-) FORMUL 15 HOH *1238(H2 O)
HELIX 1 1 THR A 308 ALA A 313 5 6 HELIX 2 2 ARG A 347 LEU A 352 1 6 HELIX 3 3 ASP A 354 ASP A 363 1 10 HELIX 4 4 ASP A 372 TRP A 382 1 11 HELIX 5 5 LEU A 394 ASP A 402 1 9 HELIX 6 6 PRO A 403 GLY A 406 5 4 HELIX 7 7 ASP A 409 MET A 416 1 8 HELIX 8 8 PRO A 424 GLY A 430 1 7 HELIX 9 9 LYS A 431 ARG A 435 5 5 HELIX 10 10 ASP A 439 ASN A 468 1 30 HELIX 11 11 GLN A 470 LEU A 477 1 8 HELIX 12 12 LEU A 477 GLY A 492 1 16 HELIX 13 13 ASP A 496 GLY A 523 1 28 HELIX 14 14 SER A 530 GLU A 540 1 11 HELIX 15 15 SER A 557 ALA A 565 1 9 HELIX 16 16 GLU A 569 TYR A 587 1 19 HELIX 17 17 ILE A 588 VAL A 595 1 8 HELIX 18 18 LEU A 630 LYS A 635 1 6 HELIX 19 19 ILE A 636 GLN A 638 5 3 HELIX 20 20 GLN A 656 GLU A 667 1 12 HELIX 21 21 ASP A 668 ARG A 677 1 10 HELIX 22 22 ASP A 680 PHE A 690 1 11 HELIX 23 23 SER A 693 VAL A 697 5 5 HELIX 24 24 THR A 698 TYR A 714 1 17 HELIX 25 25 SER A 717 ASN A 726 1 10 HELIX 26 26 SER A 728 PHE A 743 1 16 HELIX 27 27 PHE A 743 GLY A 761 1 19 HELIX 28 28 PRO A 774 SER A 778 5 5 HELIX 29 29 ASN A 780 GLU A 818 1 39 HELIX 30 30 GLU A 840 ALA A 855 1 16 HELIX 31 31 THR D 308 ALA D 313 5 6 HELIX 32 32 ARG D 347 LEU D 352 1 6 HELIX 33 33 ASP D 354 GLY D 362 1 9 HELIX 34 34 ASP D 372 TRP D 382 1 11 HELIX 35 35 LEU D 394 ASP D 402 1 9 HELIX 36 36 PRO D 403 GLY D 406 5 4 HELIX 37 37 ASP D 409 MET D 416 1 8 HELIX 38 38 PRO D 424 GLY D 430 1 7 HELIX 39 39 LYS D 431 ARG D 435 5 5 HELIX 40 40 ASP D 439 ASN D 468 1 30 HELIX 41 41 GLN D 470 LEU D 477 1 8 HELIX 42 42 LEU D 477 GLY D 492 1 16 HELIX 43 43 ASP D 496 GLY D 523 1 28 HELIX 44 44 SER D 530 GLU D 540 1 11 HELIX 45 45 SER D 557 ALA D 565 1 9 HELIX 46 46 GLU D 569 TYR D 587 1 19 HELIX 47 47 ILE D 588 VAL D 595 1 8 HELIX 48 48 LEU D 630 LYS D 635 1 6 HELIX 49 49 ILE D 636 GLN D 638 5 3 HELIX 50 50 GLN D 656 GLU D 667 1 12 HELIX 51 51 ASP D 668 ARG D 677 1 10 HELIX 52 52 ASP D 680 GLN D 691 1 12 HELIX 53 53 SER D 693 VAL D 697 5 5 HELIX 54 54 THR D 698 ILE D 712 1 15 HELIX 55 55 SER D 717 ASN D 726 1 10 HELIX 56 56 SER D 728 PHE D 743 1 16 HELIX 57 57 PHE D 743 GLY D 761 1 19 HELIX 58 58 PRO D 774 SER D 778 5 5 HELIX 59 59 ASN D 780 GLU D 818 1 39 HELIX 60 60 GLU D 840 GLN D 854 1 15
SHEET 1 A 6 THR A 302 ALA A 304 0 SHEET 2 A 6 GLY A 342 LEU A 346 1 O ARG A 343 N THR A 302 SHEET 3 A 6 GLY A 334 ASN A 339 -1 N VAL A 337 O PHE A 344 SHEET 4 A 6 LYS A 315 GLU A 321 -1 N ALA A 317 O VAL A 338 SHEET 5 A 6 LYS A 367 MET A 370 1 O SER A 369 N LEU A 318 SHEET 6 A 6 VAL A 390 ASP A 393 1 O PHE A 392 N MET A 370 SHEET 1 B 3 LYS A 601 VAL A 602 0 SHEET 2 B 3 VAL A 493 VAL A 495 -1 N VAL A 493 O VAL A 602 SHEET 3 B 3 PHE A 640 VAL A 641 -1 O VAL A 641 N LYS A 494 SHEET 1 C 2 ILE A 605 ASN A 607 0 SHEET 2 C 2 SER A 617 THR A 619 -1 O THR A 619 N ILE A 605 SHEET 1 D 4 HIS A 823 GLN A 827 0 SHEET 2 D 4 GLU A 831 PRO A 837 -1 O ILE A 833 N LEU A 825 SHEET 3 D 4 TRP A 647 TYR A 654 -1 N PHE A 650 O LEU A 834 SHEET 4 D 4 VAL A 864 GLY A 869 -1 O HIS A 867 N ALA A 651 SHEET 1 E 2 TYR A 762 THR A 764 0 SHEET 2 E 2 ARG A 770 TYR A 772 -1 O ARG A 771 N VAL A 763 SHEET 1 F 6 THR D 302 LEU D 303 0 SHEET 2 F 6 GLY D 342 LEU D 346 1 O ARG D 343 N THR D 302 SHEET 3 F 6 GLY D 334 ASN D 339 -1 N ILE D 335 O LEU D 346 SHEET 4 F 6 LYS D 315 GLU D 321 -1 N ALA D 317 O VAL D 338 SHEET 5 F 6 LYS D 367 MET D 370 1 O SER D 369 N LEU D 318 SHEET 6 F 6 VAL D 390 ASP D 393 1 O PHE D 392 N MET D 370 SHEET 1 G 3 LYS D 601 VAL D 602 0 SHEET 2 G 3 VAL D 493 VAL D 495 -1 N VAL D 493 O VAL D 602 SHEET 3 G 3 PHE D 640 VAL D 641 -1 O VAL D 641 N LYS D 494 SHEET 1 H 2 LYS D 549 THR D 550 0 SHEET 2 H 2 GLY D 553 TYR D 554 -1 O GLY D 553 N THR D 550 SHEET 1 I 2 ILE D 605 ASN D 607 0 SHEET 2 I 2 SER D 617 THR D 619 -1 O THR D 619 N ILE D 605 SHEET 1 J 4 HIS D 823 GLN D 827 0 SHEET 2 J 4 GLU D 831 PRO D 837 -1 O ILE D 833 N LEU D 825 SHEET 3 J 4 TRP D 647 TYR D 654 -1 N PHE D 650 O LEU D 834 SHEET 4 J 4 VAL D 864 GLY D 869 -1 O HIS D 867 N ALA D 651 SHEET 1 K 2 TYR D 762 THR D 764 0 SHEET 2 K 2 ARG D 770 TYR D 772 -1 O ARG D 771 N VAL D 763
LINK O2B CTP D 901 MG MG D 902 1555 1555 2.03 LINK O2A CTP D 901 MG MG D 902 1555 1555 2.14 LINK O2G CTP D 901 MG MG D 902 1555 1555 2.48 LINK MG MG D 902 O HOH D1642 1555 1555 1.91 LINK MG MG D 902 O HOH D1641 1555 1555 2.09 LINK MG MG D 902 O HOH D1643 1555 1555 2.10 LINK O3' DC B 28 P DOC B 29 1555 1555 1.61 LINK O3' DC E 28 P DOC E 29 1555 1555 1.62
CISPEP 1 GLU A 620 PRO A 621 0 0.78 CISPEP 2 GLU D 620 PRO D 621 0 2.02
SITE 1 AC1 15 ARG A 629 GLN A 656 HIS A 682 ARG A 702 SITE 2 AC1 15 LYS A 706 ALA A 707 TYR A 710 TYR A 714 SITE 3 AC1 15 HOH A1019 HOH A1083 HOH A1145 HOH A1174 SITE 4 AC1 15 HOH A1330 DOC B 29 DG C 3 SITE 1 AC2 16 GLU A 325 TYR A 327 ASP A 372 ARG A 375 SITE 2 AC2 16 ASP A 408 ILE A 605 ASN A 607 HOH A1011 SITE 3 AC2 16 HOH A1013 HOH A1032 HOH A1053 HOH A1072 SITE 4 AC2 16 HOH A1171 HOH A1212 HOH A1223 HOH A1279 SITE 1 AC3 19 GLN D 656 GLU D 658 HIS D 682 ARG D 702 SITE 2 AC3 19 LYS D 706 TYR D 710 TYR D 714 ASP D 830 SITE 3 AC3 19 MG D 902 HOH D1531 HOH D1641 HOH D1642 SITE 4 AC3 19 HOH D1643 DOC E 29 HOH E 203 HOH E 228 SITE 5 AC3 19 DG F 3 DG F 4 HOH F 144 SITE 1 AC4 4 CTP D 901 HOH D1641 HOH D1642 HOH D1643 SITE 1 AC5 6 LYS D 298 MET D 299 ALA D 300 ARG D 343 SITE 2 AC5 6 ARG D 677 HOH D1524 SITE 1 AC6 16 GLU D 325 TYR D 327 ASP D 372 ARG D 375 SITE 2 AC6 16 ASP D 408 ILE D 605 ASN D 607 HOH D1009 SITE 3 AC6 16 HOH D1036 HOH D1065 HOH D1072 HOH D1089 SITE 4 AC6 16 HOH D1199 HOH D1248 HOH D1366 HOH D1508 SITE 1 AC7 4 ARG D 306 THR D 308 GLU D 309 HOH D1362 SITE 1 AC8 5 ARG A 779 ASN A 780 PRO D 424 HOH D1490 SITE 2 AC8 5 HOH D1559
CRYST1 93.220 108.480 150.950 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010727 0.000000 0.000000 0.00000
SCALE2 0.000000 0.009218 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006625 0.00000