10 20 30 40 50 60 70 80 4DSF - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE/DNA 18-FEB-12 4DSF
TITLE TERNARY COMPLEX OF BACILLUS DNA POLYMERASE I LARGE FRAGMENT F710Y, DNA TITLE 2 DUPLEX, AND RCTP (PAIRED WITH DG OF TEMPLATE) IN PRESENCE OF MN2+
COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: UN RESIDUES 287-878; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DOC))-3'); COMPND 10 CHAIN: B, E; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: DNA PRIMER STRAND; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(*CP*AP*TP*GP*GP*GP*AP*GP*TP*CP*AP*GP*G)-3'); COMPND 15 CHAIN: C, F; COMPND 16 ENGINEERED: YES; COMPND 17 OTHER_DETAILS: DNA TEMPLATE STRAND
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS KAUSTOPHILUS; SOURCE 3 ORGANISM_TAXID: 235909; SOURCE 4 STRAIN: HTA426; SOURCE 5 GENE: POLA, GK2730; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET30A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES
KEYWDS DNA POLYMERASE I, TRANSFERASE-DNA COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR W.WANG,L.S.BEESE
REVDAT 3 21-NOV-12 4DSF 1 JRNL REVDAT 2 13-JUN-12 4DSF 1 JRNL REVDAT 1 06-JUN-12 4DSF 0
JRNL AUTH W.WANG,E.Y.WU,H.W.HELLINGA,L.S.BEESE JRNL TITL STRUCTURAL FACTORS THAT DETERMINE SELECTIVITY OF A HIGH JRNL TITL 2 FIDELITY DNA POLYMERASE FOR DEOXY-, DIDEOXY-, AND JRNL TITL 3 RIBONUCLEOTIDES. JRNL REF J.BIOL.CHEM. V. 287 28215 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22648417 JRNL DOI 10.1074/JBC.M112.366609
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH W.WANG,H.W.HELLINGA,L.S.BEESE REMARK 1 TITL STRUCTURAL EVIDENCE FOR THE RARE TAUTOMER HYPOTHESIS OF REMARK 1 TITL 2 SPONTANEOUS MUTAGENESIS. REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 108 17644 2011 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 22006298 REMARK 1 DOI 10.1073/PNAS.1114496108
REMARK 2 REMARK 2 RESOLUTION. 1.66 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1026) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.5 REMARK 3 NUMBER OF REFLECTIONS : 156479 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.320 REMARK 3 FREE R VALUE TEST SET COUNT : 6763 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 71.1278 - 5.1612 0.99 6013 311 0.2043 0.2069 REMARK 3 2 5.1612 - 4.0967 1.00 5875 308 0.1503 0.1829 REMARK 3 3 4.0967 - 3.5789 0.97 5633 289 0.1618 0.1807 REMARK 3 4 3.5789 - 3.2517 1.00 5789 297 0.1660 0.1763 REMARK 3 5 3.2517 - 3.0186 1.00 5756 296 0.1808 0.2028 REMARK 3 6 3.0186 - 2.8406 0.99 5771 267 0.1862 0.2088 REMARK 3 7 2.8406 - 2.6984 0.99 5761 254 0.1869 0.2160 REMARK 3 8 2.6984 - 2.5809 0.99 5741 246 0.1790 0.2035 REMARK 3 9 2.5809 - 2.4815 0.99 5747 232 0.1721 0.1961 REMARK 3 10 2.4815 - 2.3959 0.99 5743 225 0.1688 0.2150 REMARK 3 11 2.3959 - 2.3210 0.98 5687 230 0.1677 0.2063 REMARK 3 12 2.3210 - 2.2546 0.85 3764 140 0.1772 0.2004 REMARK 3 13 2.2546 - 2.1953 0.72 2225 116 0.1909 0.2131 REMARK 3 14 2.1953 - 2.1417 0.98 5620 215 0.1694 0.1945 REMARK 3 15 2.1417 - 2.0930 0.98 5657 232 0.1675 0.1820 REMARK 3 16 2.0930 - 2.0485 0.98 5683 211 0.1702 0.1783 REMARK 3 17 2.0485 - 2.0075 0.97 5641 197 0.1732 0.1953 REMARK 3 18 2.0075 - 1.9696 0.97 5579 189 0.1814 0.2058 REMARK 3 19 1.9696 - 1.9344 0.77 3815 198 0.1869 0.2208 REMARK 3 20 1.9016 - 1.8710 0.76 3300 113 0.1945 0.2493 REMARK 3 21 1.8710 - 1.8422 0.91 5208 263 0.1865 0.2181 REMARK 3 22 1.8422 - 1.8151 0.92 5307 263 0.1915 0.2447 REMARK 3 23 1.8151 - 1.7895 0.92 5196 260 0.1918 0.2140 REMARK 3 24 1.7895 - 1.7653 0.92 5228 267 0.1884 0.2064 REMARK 3 25 1.7653 - 1.7424 0.90 5144 246 0.1979 0.2401 REMARK 3 26 1.7424 - 1.7206 0.90 5143 242 0.2065 0.2394 REMARK 3 27 1.7206 - 1.6999 0.89 5026 251 0.2084 0.2455 REMARK 3 28 1.6999 - 1.6801 0.88 5016 245 0.2233 0.2549 REMARK 3 29 1.6801 - 1.6612 0.63 3648 160 0.2322 0.2480 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00140 REMARK 3 B22 (A**2) : 0.55170 REMARK 3 B33 (A**2) : -0.55310 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 10201 REMARK 3 ANGLE : 1.379 13973 REMARK 3 CHIRALITY : 0.079 1563 REMARK 3 PLANARITY : 0.007 1676 REMARK 3 DIHEDRAL : 14.798 3938 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain 'A' and (resseq 297:372) REMARK 3 ORIGIN FOR THE GROUP (A): 118.7940 -64.1027 24.3908 REMARK 3 T TENSOR REMARK 3 T11: 0.5924 T22: 0.3386 REMARK 3 T33: 0.4460 T12: 0.1013 REMARK 3 T13: 0.1308 T23: -0.0389 REMARK 3 L TENSOR REMARK 3 L11: 2.1440 L22: 2.0457 REMARK 3 L33: 2.4275 L12: 0.4492 REMARK 3 L13: -0.2838 L23: 0.4933 REMARK 3 S TENSOR REMARK 3 S11: -0.1352 S12: 0.2742 S13: -0.5743 REMARK 3 S21: -0.3439 S22: 0.0141 S23: -0.3201 REMARK 3 S31: 0.4044 S32: 0.0115 S33: 0.1059 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain 'A' and (resseq 373:496) REMARK 3 ORIGIN FOR THE GROUP (A): 119.2594 -50.2325 23.8579 REMARK 3 T TENSOR REMARK 3 T11: 0.4078 T22: 0.3551 REMARK 3 T33: 0.2585 T12: 0.0909 REMARK 3 T13: 0.0798 T23: 0.0289 REMARK 3 L TENSOR REMARK 3 L11: 1.1015 L22: 1.8605 REMARK 3 L33: 1.4237 L12: 0.5083 REMARK 3 L13: -0.2854 L23: 0.5690 REMARK 3 S TENSOR REMARK 3 S11: -0.1540 S12: 0.2244 S13: -0.0856 REMARK 3 S21: -0.2719 S22: 0.1396 S23: -0.0185 REMARK 3 S31: 0.3126 S32: 0.2263 S33: 0.0199 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: chain 'A' and (resseq 497:604) REMARK 3 ORIGIN FOR THE GROUP (A): 104.6819 -25.4973 52.0258 REMARK 3 T TENSOR REMARK 3 T11: 0.4022 T22: 0.2662 REMARK 3 T33: 0.2911 T12: -0.0224 REMARK 3 T13: 0.0425 T23: -0.0369 REMARK 3 L TENSOR REMARK 3 L11: 0.8818 L22: 3.2277 REMARK 3 L33: 1.1292 L12: -1.1021 REMARK 3 L13: 0.1029 L23: -0.6939 REMARK 3 S TENSOR REMARK 3 S11: -0.0623 S12: -0.1849 S13: 0.0307 REMARK 3 S21: 0.3395 S22: 0.1027 S23: 0.3391 REMARK 3 S31: -0.1467 S32: -0.0392 S33: -0.0307 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: chain 'A' and (resseq 605:876) REMARK 3 ORIGIN FOR THE GROUP (A): 129.6917 -29.4865 37.2147 REMARK 3 T TENSOR REMARK 3 T11: 0.2879 T22: 0.6012 REMARK 3 T33: 0.3254 T12: -0.0763 REMARK 3 T13: -0.0043 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 0.8330 L22: 1.4581 REMARK 3 L33: 2.7288 L12: 0.2344 REMARK 3 L13: -0.5814 L23: 0.0848 REMARK 3 S TENSOR REMARK 3 S11: 0.0642 S12: -0.3005 S13: 0.0944 REMARK 3 S21: 0.1123 S22: -0.0515 S23: -0.4448 REMARK 3 S31: -0.3447 S32: 0.9023 S33: 0.0086 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: chain 'D' and (resseq 298:467) REMARK 3 ORIGIN FOR THE GROUP (A): 137.7828 -47.7720 -9.3601 REMARK 3 T TENSOR REMARK 3 T11: 0.0964 T22: 0.0885 REMARK 3 T33: 0.1002 T12: 0.0354 REMARK 3 T13: -0.0123 T23: -0.0193 REMARK 3 L TENSOR REMARK 3 L11: 1.7593 L22: 1.5885 REMARK 3 L33: 1.3086 L12: -0.2510 REMARK 3 L13: 0.2922 L23: 0.5659 REMARK 3 S TENSOR REMARK 3 S11: 0.0537 S12: 0.0390 S13: -0.1261 REMARK 3 S21: -0.0594 S22: 0.0045 S23: -0.0994 REMARK 3 S31: 0.1215 S32: 0.1073 S33: -0.0356 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: chain 'D' and (resseq 468:604) REMARK 3 ORIGIN FOR THE GROUP (A): 122.4959 -20.4154 -30.5555 REMARK 3 T TENSOR REMARK 3 T11: 0.2353 T22: 0.1596 REMARK 3 T33: 0.1630 T12: 0.0132 REMARK 3 T13: 0.0087 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.5789 L22: 1.4097 REMARK 3 L33: 1.1698 L12: 0.4276 REMARK 3 L13: -0.0417 L23: -0.7187 REMARK 3 S TENSOR REMARK 3 S11: -0.0941 S12: 0.1869 S13: 0.1401 REMARK 3 S21: -0.3532 S22: 0.2203 S23: 0.1534 REMARK 3 S31: -0.0777 S32: -0.1011 S33: -0.1207 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: chain 'D' and (resseq 605:876) REMARK 3 ORIGIN FOR THE GROUP (A): 118.1028 -18.3025 -8.6977 REMARK 3 T TENSOR REMARK 3 T11: 0.0931 T22: 0.1114 REMARK 3 T33: 0.1461 T12: 0.0116 REMARK 3 T13: 0.0090 T23: 0.0282 REMARK 3 L TENSOR REMARK 3 L11: 1.2643 L22: 1.1326 REMARK 3 L33: 1.2036 L12: -0.0416 REMARK 3 L13: -0.0236 L23: 0.6652 REMARK 3 S TENSOR REMARK 3 S11: 0.0450 S12: 0.1340 S13: 0.2517 REMARK 3 S21: -0.1400 S22: -0.0653 S23: 0.0893 REMARK 3 S31: -0.2034 S32: -0.0743 S33: 0.0238 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: chain 'B' and (resseq 21:29) REMARK 3 ORIGIN FOR THE GROUP (A): 108.4732 -28.1397 40.1031 REMARK 3 T TENSOR REMARK 3 T11: 0.4300 T22: 0.1956 REMARK 3 T33: 0.3598 T12: -0.0428 REMARK 3 T13: -0.0714 T23: -0.0577 REMARK 3 L TENSOR REMARK 3 L11: 3.5000 L22: 1.5455 REMARK 3 L33: 3.9840 L12: -0.0648 REMARK 3 L13: 0.3459 L23: 0.0787 REMARK 3 S TENSOR REMARK 3 S11: -0.3577 S12: 0.1084 S13: 0.1729 REMARK 3 S21: -0.5649 S22: 0.1115 S23: 0.3713 REMARK 3 S31: -0.3264 S32: 0.1191 S33: 0.2149 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: chain 'C' and (resseq 2:12) REMARK 3 ORIGIN FOR THE GROUP (A): 108.4863 -31.0687 39.0500 REMARK 3 T TENSOR REMARK 3 T11: 0.2874 T22: 0.2073 REMARK 3 T33: 0.2510 T12: -0.0080 REMARK 3 T13: -0.0052 T23: 0.0196 REMARK 3 L TENSOR REMARK 3 L11: 3.8638 L22: 3.3138 REMARK 3 L33: 2.2508 L12: 0.0383 REMARK 3 L13: -0.3408 L23: 0.2336 REMARK 3 S TENSOR REMARK 3 S11: -0.1056 S12: -0.0230 S13: 0.1659 REMARK 3 S21: -0.1939 S22: -0.0258 S23: 0.5738 REMARK 3 S31: -0.0849 S32: 0.0171 S33: 0.1846 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: chain 'E' and (resseq 21:29) REMARK 3 ORIGIN FOR THE GROUP (A): 129.6121 -18.5466 -27.0549 REMARK 3 T TENSOR REMARK 3 T11: 0.2340 T22: 0.1637 REMARK 3 T33: 0.2649 T12: 0.0287 REMARK 3 T13: 0.0550 T23: 0.0199 REMARK 3 L TENSOR REMARK 3 L11: 2.4049 L22: 1.1505 REMARK 3 L33: 3.8142 L12: 1.2430 REMARK 3 L13: -1.3232 L23: -0.5855 REMARK 3 S TENSOR REMARK 3 S11: -0.0541 S12: 0.2098 S13: 0.2546 REMARK 3 S21: -0.1067 S22: 0.1729 S23: -0.3261 REMARK 3 S31: 0.0265 S32: 0.0238 S33: -0.1367 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: chain 'F' and (resseq 1:12) REMARK 3 ORIGIN FOR THE GROUP (A): 131.0841 -17.3259 -23.8315 REMARK 3 T TENSOR REMARK 3 T11: 0.2371 T22: 0.1877 REMARK 3 T33: 0.2388 T12: -0.0262 REMARK 3 T13: 0.0875 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 1.3449 L22: 0.7395 REMARK 3 L33: 1.7252 L12: -0.5519 REMARK 3 L13: -0.7492 L23: -0.5471 REMARK 3 S TENSOR REMARK 3 S11: 0.1617 S12: 0.1443 S13: 0.3074 REMARK 3 S21: -0.3845 S22: 0.0684 S23: -0.4305 REMARK 3 S31: -0.4508 S32: 0.1046 S33: -0.2112 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 4DSF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-FEB-12. REMARK 100 THE RCSB ID CODE IS RCSB070723.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 12.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1159 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 164320 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.660 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.620 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4DSE REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50% SATURATED AMMONIUM SULFATE, 2.5% REMARK 280 MPD, 10MM MNSO4, 100MM MES, PH 5.8, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 290K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 46.84000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.04500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.53000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.04500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.84000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.53000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 285 REMARK 465 GLU A 286 REMARK 465 SER A 287 REMARK 465 PRO A 288 REMARK 465 SER A 289 REMARK 465 SER A 290 REMARK 465 GLU A 291 REMARK 465 GLU A 292 REMARK 465 GLU A 293 REMARK 465 LYS A 294 REMARK 465 PRO A 295 REMARK 465 LEU A 296 REMARK 465 ASP A 678 REMARK 465 LEU A 679 REMARK 465 ASP A 680 REMARK 465 ILE A 681 REMARK 465 HIS A 682 REMARK 465 THR A 683 REMARK 465 LYS A 684 REMARK 465 THR A 685 REMARK 465 ALA A 686 REMARK 465 MET A 687 REMARK 465 ASP A 688 REMARK 465 ILE A 689 REMARK 465 PHE A 690 REMARK 465 GLN A 691 REMARK 465 VAL A 692 REMARK 465 SER A 693 REMARK 465 GLU A 694 REMARK 465 ASP A 695 REMARK 465 GLU A 696 REMARK 465 VAL A 697 REMARK 465 THR A 698 REMARK 465 PRO A 699 REMARK 465 ASN A 700 REMARK 465 MET A 701 REMARK 465 ARG A 702 REMARK 465 ARG A 703 REMARK 465 GLN A 704 REMARK 465 ALA A 705 REMARK 465 LYS A 706 REMARK 465 ALA A 707 REMARK 465 VAL A 708 REMARK 465 ILE A 712 REMARK 465 VAL A 713 REMARK 465 TYR A 714 REMARK 465 MET D 285 REMARK 465 GLU D 286 REMARK 465 SER D 287 REMARK 465 PRO D 288 REMARK 465 SER D 289 REMARK 465 SER D 290 REMARK 465 GLU D 291 REMARK 465 GLU D 292 REMARK 465 GLU D 293 REMARK 465 LYS D 294 REMARK 465 PRO D 295 REMARK 465 LEU D 296 REMARK 465 ALA D 297 REMARK 465 DC C 0 REMARK 465 DA C 1 REMARK 465 DT C 2 REMARK 465 DG C 3 REMARK 465 DC F 0
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS D 298 CG CD CE NZ REMARK 470 DA F 1 P OP1 OP2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG CYS D 845 O HOH D 1411 1.38 REMARK 500 HE ARG D 596 O HOH D 1072 1.39 REMARK 500 HH12 ARG D 629 O HOH D 1527 1.41 REMARK 500 HG CYS D 845 O HOH D 1168 1.43 REMARK 500 HZ1 LYS A 758 O HOH A 1239 1.48 REMARK 500 HZ2 LYS D 706 O1A CTP D 901 1.54 REMARK 500 HZ1 LYS A 494 O HOH A 1238 1.58 REMARK 500 HH12 ARG D 779 O HOH D 1590 1.60 REMARK 500 O HOH D 1174 O HOH D 1410 1.82 REMARK 500 O HOH A 1182 O HOH A 1219 1.84 REMARK 500 O HOH D 1416 O HOH D 1519 1.88 REMARK 500 O HOH A 948 O HOH A 970 1.88 REMARK 500 O HOH A 952 O HOH A 1228 1.90 REMARK 500 O HOH D 1568 O HOH D 1589 1.96 REMARK 500 O HOH A 1028 O HOH A 1054 1.98 REMARK 500 O HOH D 1289 O HOH D 1545 1.99 REMARK 500 O HOH D 1274 O HOH D 1634 2.00 REMARK 500 O GLN A 821 O HOH A 1183 2.01 REMARK 500 O HOH D 1343 O HOH D 1383 2.02 REMARK 500 O HOH D 1638 O HOH D 1648 2.03 REMARK 500 O HOH A 948 O HOH A 1089 2.04 REMARK 500 O HOH D 1362 O HOH D 1512 2.04 REMARK 500 OD1 ASP A 408 O HOH A 996 2.06 REMARK 500 O HOH A 1161 O HOH A 1212 2.06 REMARK 500 OP1 DT B 27 O HOH B 128 2.07 REMARK 500 O HOH D 1472 O HOH D 1576 2.07 REMARK 500 O HOH D 1272 O HOH D 1543 2.08 REMARK 500 N ALA D 705 O HOH D 1612 2.10 REMARK 500 O HOH D 1457 O HOH D 1483 2.10 REMARK 500 O HOH D 1258 O HOH D 1449 2.11 REMARK 500 O HOH D 1648 O HOH D 1651 2.11 REMARK 500 OD1 ASP D 305 O HOH D 1627 2.12 REMARK 500 OD1 ASP D 408 O HOH D 1181 2.13 REMARK 500 O HOH D 1411 O HOH D 1466 2.14 REMARK 500 OD2 ASP A 559 O HOH A 1005 2.14 REMARK 500 OE2 GLU D 325 O HOH D 1133 2.15 REMARK 500 OE2 GLU D 520 O HOH D 1577 2.15 REMARK 500 O HOH D 1646 O HOH D 1647 2.16 REMARK 500 O HOH A 1092 O HOH D 1542 2.16 REMARK 500 OE1 GLN D 418 O HOH D 1261 2.16 REMARK 500 O HOH D 1628 O HOH D 1637 2.17 REMARK 500 O HOH D 1528 O HOH D 1629 2.17 REMARK 500 O HOH D 1533 O HOH D 1628 2.17 REMARK 500 O HOH E 110 O HOH E 113 2.19 REMARK 500 OH TYR A 749 O HOH A 951 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HZ3 LYS A 505 OE1 GLN D 356 2745 1.57 REMARK 500 O HOH A 1027 O HOH D 1404 2745 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC C 9 O3' DC C 9 C3' -0.038 REMARK 500 DA F 6 N9 DA F 6 C4 -0.045 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT B 23 O4' - C1' - N1 ANGL. DEV. = -5.5 DEGREES REMARK 500 DT B 23 N3 - C4 - O4 ANGL. DEV. = 4.1 DEGREES REMARK 500 DA B 25 O4' - C4' - C3' ANGL. DEV. = -2.9 DEGREES REMARK 500 DA B 25 C5' - C4' - C3' ANGL. DEV. = 9.1 DEGREES REMARK 500 DA B 25 O4' - C1' - C2' ANGL. DEV. = 3.4 DEGREES REMARK 500 DC B 26 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DT C 8 O4' - C1' - N1 ANGL. DEV. = -6.4 DEGREES REMARK 500 DG C 12 O4' - C1' - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 DC E 21 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DT E 23 O4' - C1' - N1 ANGL. DEV. = -5.9 DEGREES REMARK 500 DT E 23 N3 - C4 - O4 ANGL. DEV. = 3.9 DEGREES REMARK 500 DT E 23 C5 - C4 - O4 ANGL. DEV. = -4.3 DEGREES REMARK 500 DC E 26 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DT E 27 C6 - C5 - C7 ANGL. DEV. = -3.8 DEGREES REMARK 500 DT F 2 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG F 4 O4' - C1' - C2' ANGL. DEV. = 3.2 DEGREES REMARK 500 DG F 4 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA F 6 OP1 - P - OP2 ANGL. DEV. = -10.3 DEGREES REMARK 500 DA F 6 C2 - N3 - C4 ANGL. DEV. = -3.4 DEGREES REMARK 500 DT F 8 O4' - C1' - N1 ANGL. DEV. = -9.1 DEGREES REMARK 500 DA F 10 O4' - C1' - N9 ANGL. DEV. = -4.4 DEGREES REMARK 500 DG F 12 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 312 40.35 -108.44 REMARK 500 ASP A 372 63.53 60.72 REMARK 500 ASP A 402 99.74 -166.46 REMARK 500 ALA A 421 43.76 -84.53 REMARK 500 LEU A 477 -69.58 -123.54 REMARK 500 ILE A 588 -71.59 -105.83 REMARK 500 LEU A 610 -51.99 -120.15 REMARK 500 ILE A 628 -29.41 -146.84 REMARK 500 HIS A 768 19.80 87.93 REMARK 500 HIS A 829 -52.92 78.36 REMARK 500 ASP D 402 97.21 -169.20 REMARK 500 ALA D 421 45.11 -93.77 REMARK 500 ILE D 588 -66.33 -103.20 REMARK 500 LEU D 610 -52.22 -123.89 REMARK 500 ILE D 628 -25.73 -148.70 REMARK 500 ASN D 726 55.30 35.01 REMARK 500 HIS D 768 19.65 83.33 REMARK 500 HIS D 829 -52.75 70.13 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1206 DISTANCE = 5.19 ANGSTROMS REMARK 525 HOH D1598 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH D1626 DISTANCE = 7.27 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CTP D 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 905
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DS4 RELATED DB: PDB REMARK 900 RELATED ID: 4DS5 RELATED DB: PDB REMARK 900 RELATED ID: 4DSE RELATED DB: PDB
REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT THE PROTEIN WAS ISOLATED FROM A STRAIN OF REMARK 999 GEOBACILLUS SPECIES WHOSE SEQUENCE IS NOT AVAILABLE IN THE UNIPROT REMARK 999 DATABASE. IT DIFFERS FROM UNP Q5KWC1 BY THIS SINGLE RESIDUE
DBREF 4DSF A 285 876 UNP Q5KWC1 Q5KWC1_GEOKA 287 878 DBREF 4DSF D 285 876 UNP Q5KWC1 Q5KWC1_GEOKA 287 878 DBREF 4DSF B 21 29 PDB 4DSF 4DSF 21 29 DBREF 4DSF E 21 29 PDB 4DSF 4DSF 21 29 DBREF 4DSF C 0 12 PDB 4DSF 4DSF 0 12 DBREF 4DSF F 0 12 PDB 4DSF 4DSF 0 12
SEQADV 4DSF ALA A 598 UNP Q5KWC1 ASP 600 ENGINEERED MUTATION SEQADV 4DSF TYR A 710 UNP Q5KWC1 PHE 712 ENGINEERED MUTATION SEQADV 4DSF HIS A 823 UNP Q5KWC1 ARG 825 SEE REMARK 999 SEQADV 4DSF ALA D 598 UNP Q5KWC1 ASP 600 ENGINEERED MUTATION SEQADV 4DSF TYR D 710 UNP Q5KWC1 PHE 712 ENGINEERED MUTATION SEQADV 4DSF HIS D 823 UNP Q5KWC1 ARG 825 SEE REMARK 999
SEQRES 1 A 592 MET GLU SER PRO SER SER GLU GLU GLU LYS PRO LEU ALA SEQRES 2 A 592 LYS MET ALA PHE THR LEU ALA ASP ARG VAL THR GLU GLU SEQRES 3 A 592 MET LEU ALA ASP LYS ALA ALA LEU VAL VAL GLU VAL VAL SEQRES 4 A 592 GLU GLU ASN TYR HIS ASP ALA PRO ILE VAL GLY ILE ALA SEQRES 5 A 592 VAL VAL ASN GLU HIS GLY ARG PHE PHE LEU ARG PRO GLU SEQRES 6 A 592 THR ALA LEU ALA ASP PRO GLN PHE VAL ALA TRP LEU GLY SEQRES 7 A 592 ASP GLU THR LYS LYS LYS SER MET PHE ASP SER LYS ARG SEQRES 8 A 592 ALA ALA VAL ALA LEU LYS TRP LYS GLY ILE GLU LEU CYS SEQRES 9 A 592 GLY VAL SER PHE ASP LEU LEU LEU ALA ALA TYR LEU LEU SEQRES 10 A 592 ASP PRO ALA GLN GLY VAL ASP ASP VAL ALA ALA ALA ALA SEQRES 11 A 592 LYS MET LYS GLN TYR GLU ALA VAL ARG PRO ASP GLU ALA SEQRES 12 A 592 VAL TYR GLY LYS GLY ALA LYS ARG ALA VAL PRO ASP GLU SEQRES 13 A 592 PRO VAL LEU ALA GLU HIS LEU VAL ARG LYS ALA ALA ALA SEQRES 14 A 592 ILE TRP GLU LEU GLU ARG PRO PHE LEU ASP GLU LEU ARG SEQRES 15 A 592 ARG ASN GLU GLN ASP ARG LEU LEU VAL GLU LEU GLU GLN SEQRES 16 A 592 PRO LEU SER SER ILE LEU ALA GLU MET GLU PHE ALA GLY SEQRES 17 A 592 VAL LYS VAL ASP THR LYS ARG LEU GLU GLN MET GLY LYS SEQRES 18 A 592 GLU LEU ALA GLU GLN LEU GLY THR VAL GLU GLN ARG ILE SEQRES 19 A 592 TYR GLU LEU ALA GLY GLN GLU PHE ASN ILE ASN SER PRO SEQRES 20 A 592 LYS GLN LEU GLY VAL ILE LEU PHE GLU LYS LEU GLN LEU SEQRES 21 A 592 PRO VAL LEU LYS LYS THR LYS THR GLY TYR SER THR SER SEQRES 22 A 592 ALA ASP VAL LEU GLU LYS LEU ALA PRO TYR HIS GLU ILE SEQRES 23 A 592 VAL GLU ASN ILE LEU HIS TYR ARG GLN LEU GLY LYS LEU SEQRES 24 A 592 GLN SER THR TYR ILE GLU GLY LEU LEU LYS VAL VAL ARG SEQRES 25 A 592 PRO ALA THR LYS LYS VAL HIS THR ILE PHE ASN GLN ALA SEQRES 26 A 592 LEU THR GLN THR GLY ARG LEU SER SER THR GLU PRO ASN SEQRES 27 A 592 LEU GLN ASN ILE PRO ILE ARG LEU GLU GLU GLY ARG LYS SEQRES 28 A 592 ILE ARG GLN ALA PHE VAL PRO SER GLU SER ASP TRP LEU SEQRES 29 A 592 ILE PHE ALA ALA ASP TYR SER GLN ILE GLU LEU ARG VAL SEQRES 30 A 592 LEU ALA HIS ILE ALA GLU ASP ASP ASN LEU MET GLU ALA SEQRES 31 A 592 PHE ARG ARG ASP LEU ASP ILE HIS THR LYS THR ALA MET SEQRES 32 A 592 ASP ILE PHE GLN VAL SER GLU ASP GLU VAL THR PRO ASN SEQRES 33 A 592 MET ARG ARG GLN ALA LYS ALA VAL ASN TYR GLY ILE VAL SEQRES 34 A 592 TYR GLY ILE SER ASP TYR GLY LEU ALA GLN ASN LEU ASN SEQRES 35 A 592 ILE SER ARG LYS GLU ALA ALA GLU PHE ILE GLU ARG TYR SEQRES 36 A 592 PHE GLU SER PHE PRO GLY VAL LYS ARG TYR MET GLU ASN SEQRES 37 A 592 ILE VAL GLN GLU ALA LYS GLN LYS GLY TYR VAL THR THR SEQRES 38 A 592 LEU LEU HIS ARG ARG ARG TYR LEU PRO ASP ILE THR SER SEQRES 39 A 592 ARG ASN PHE ASN VAL ARG SER PHE ALA GLU ARG MET ALA SEQRES 40 A 592 MET ASN THR PRO ILE GLN GLY SER ALA ALA ASP ILE ILE SEQRES 41 A 592 LYS LYS ALA MET ILE ASP LEU ASN ALA ARG LEU LYS GLU SEQRES 42 A 592 GLU ARG LEU GLN ALA HIS LEU LEU LEU GLN VAL HIS ASP SEQRES 43 A 592 GLU LEU ILE LEU GLU ALA PRO LYS GLU GLU MET GLU ARG SEQRES 44 A 592 LEU CYS ARG LEU VAL PRO GLU VAL MET GLU GLN ALA VAL SEQRES 45 A 592 THR LEU ARG VAL PRO LEU LYS VAL ASP TYR HIS TYR GLY SEQRES 46 A 592 SER THR TRP TYR ASP ALA LYS SEQRES 1 D 592 MET GLU SER PRO SER SER GLU GLU GLU LYS PRO LEU ALA SEQRES 2 D 592 LYS MET ALA PHE THR LEU ALA ASP ARG VAL THR GLU GLU SEQRES 3 D 592 MET LEU ALA ASP LYS ALA ALA LEU VAL VAL GLU VAL VAL SEQRES 4 D 592 GLU GLU ASN TYR HIS ASP ALA PRO ILE VAL GLY ILE ALA SEQRES 5 D 592 VAL VAL ASN GLU HIS GLY ARG PHE PHE LEU ARG PRO GLU SEQRES 6 D 592 THR ALA LEU ALA ASP PRO GLN PHE VAL ALA TRP LEU GLY SEQRES 7 D 592 ASP GLU THR LYS LYS LYS SER MET PHE ASP SER LYS ARG SEQRES 8 D 592 ALA ALA VAL ALA LEU LYS TRP LYS GLY ILE GLU LEU CYS SEQRES 9 D 592 GLY VAL SER PHE ASP LEU LEU LEU ALA ALA TYR LEU LEU SEQRES 10 D 592 ASP PRO ALA GLN GLY VAL ASP ASP VAL ALA ALA ALA ALA SEQRES 11 D 592 LYS MET LYS GLN TYR GLU ALA VAL ARG PRO ASP GLU ALA SEQRES 12 D 592 VAL TYR GLY LYS GLY ALA LYS ARG ALA VAL PRO ASP GLU SEQRES 13 D 592 PRO VAL LEU ALA GLU HIS LEU VAL ARG LYS ALA ALA ALA SEQRES 14 D 592 ILE TRP GLU LEU GLU ARG PRO PHE LEU ASP GLU LEU ARG SEQRES 15 D 592 ARG ASN GLU GLN ASP ARG LEU LEU VAL GLU LEU GLU GLN SEQRES 16 D 592 PRO LEU SER SER ILE LEU ALA GLU MET GLU PHE ALA GLY SEQRES 17 D 592 VAL LYS VAL ASP THR LYS ARG LEU GLU GLN MET GLY LYS SEQRES 18 D 592 GLU LEU ALA GLU GLN LEU GLY THR VAL GLU GLN ARG ILE SEQRES 19 D 592 TYR GLU LEU ALA GLY GLN GLU PHE ASN ILE ASN SER PRO SEQRES 20 D 592 LYS GLN LEU GLY VAL ILE LEU PHE GLU LYS LEU GLN LEU SEQRES 21 D 592 PRO VAL LEU LYS LYS THR LYS THR GLY TYR SER THR SER SEQRES 22 D 592 ALA ASP VAL LEU GLU LYS LEU ALA PRO TYR HIS GLU ILE SEQRES 23 D 592 VAL GLU ASN ILE LEU HIS TYR ARG GLN LEU GLY LYS LEU SEQRES 24 D 592 GLN SER THR TYR ILE GLU GLY LEU LEU LYS VAL VAL ARG SEQRES 25 D 592 PRO ALA THR LYS LYS VAL HIS THR ILE PHE ASN GLN ALA SEQRES 26 D 592 LEU THR GLN THR GLY ARG LEU SER SER THR GLU PRO ASN SEQRES 27 D 592 LEU GLN ASN ILE PRO ILE ARG LEU GLU GLU GLY ARG LYS SEQRES 28 D 592 ILE ARG GLN ALA PHE VAL PRO SER GLU SER ASP TRP LEU SEQRES 29 D 592 ILE PHE ALA ALA ASP TYR SER GLN ILE GLU LEU ARG VAL SEQRES 30 D 592 LEU ALA HIS ILE ALA GLU ASP ASP ASN LEU MET GLU ALA SEQRES 31 D 592 PHE ARG ARG ASP LEU ASP ILE HIS THR LYS THR ALA MET SEQRES 32 D 592 ASP ILE PHE GLN VAL SER GLU ASP GLU VAL THR PRO ASN SEQRES 33 D 592 MET ARG ARG GLN ALA LYS ALA VAL ASN TYR GLY ILE VAL SEQRES 34 D 592 TYR GLY ILE SER ASP TYR GLY LEU ALA GLN ASN LEU ASN SEQRES 35 D 592 ILE SER ARG LYS GLU ALA ALA GLU PHE ILE GLU ARG TYR SEQRES 36 D 592 PHE GLU SER PHE PRO GLY VAL LYS ARG TYR MET GLU ASN SEQRES 37 D 592 ILE VAL GLN GLU ALA LYS GLN LYS GLY TYR VAL THR THR SEQRES 38 D 592 LEU LEU HIS ARG ARG ARG TYR LEU PRO ASP ILE THR SER SEQRES 39 D 592 ARG ASN PHE ASN VAL ARG SER PHE ALA GLU ARG MET ALA SEQRES 40 D 592 MET ASN THR PRO ILE GLN GLY SER ALA ALA ASP ILE ILE SEQRES 41 D 592 LYS LYS ALA MET ILE ASP LEU ASN ALA ARG LEU LYS GLU SEQRES 42 D 592 GLU ARG LEU GLN ALA HIS LEU LEU LEU GLN VAL HIS ASP SEQRES 43 D 592 GLU LEU ILE LEU GLU ALA PRO LYS GLU GLU MET GLU ARG SEQRES 44 D 592 LEU CYS ARG LEU VAL PRO GLU VAL MET GLU GLN ALA VAL SEQRES 45 D 592 THR LEU ARG VAL PRO LEU LYS VAL ASP TYR HIS TYR GLY SEQRES 46 D 592 SER THR TRP TYR ASP ALA LYS SEQRES 1 B 9 DC DC DT DG DA DC DT DC DOC SEQRES 1 C 13 DC DA DT DG DG DG DA DG DT DC DA DG DG SEQRES 1 E 9 DC DC DT DG DA DC DT DC DOC SEQRES 1 F 13 DC DA DT DG DG DG DA DG DT DC DA DG DG
MODRES 4DSF DOC B 29 DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE MODRES 4DSF DOC E 29 DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE
HET DOC B 29 28 HET DOC E 29 28 HET CTP D 901 41 HET SO4 D 902 5 HET SO4 D 903 5 HET SO4 D 904 5 HET SO4 D 905 5
HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM CTP CYTIDINE-5'-TRIPHOSPHATE HETNAM SO4 SULFATE ION
FORMUL 3 DOC 2(C9 H14 N3 O6 P) FORMUL 7 CTP C9 H16 N3 O14 P3 FORMUL 8 SO4 4(O4 S 2-) FORMUL 12 HOH *1168(H2 O)
HELIX 1 1 THR A 308 LEU A 312 5 5 HELIX 2 2 ARG A 347 LEU A 352 1 6 HELIX 3 3 ASP A 354 ASP A 363 1 10 HELIX 4 4 ASP A 372 LYS A 383 1 12 HELIX 5 5 LEU A 394 ASP A 402 1 9 HELIX 6 6 PRO A 403 GLY A 406 5 4 HELIX 7 7 ASP A 409 MET A 416 1 8 HELIX 8 8 PRO A 424 GLY A 430 1 7 HELIX 9 9 LYS A 431 ARG A 435 5 5 HELIX 10 10 ASP A 439 ASN A 468 1 30 HELIX 11 11 GLN A 470 LEU A 477 1 8 HELIX 12 12 LEU A 477 GLY A 492 1 16 HELIX 13 13 ASP A 496 GLY A 523 1 28 HELIX 14 14 SER A 530 GLU A 540 1 11 HELIX 15 15 SER A 557 ALA A 565 1 9 HELIX 16 16 GLU A 569 ILE A 588 1 20 HELIX 17 17 ILE A 588 VAL A 595 1 8 HELIX 18 18 LEU A 630 LYS A 635 1 6 HELIX 19 19 ILE A 636 GLN A 638 5 3 HELIX 20 20 GLN A 656 GLU A 667 1 12 HELIX 21 21 ASP A 668 ARG A 677 1 10 HELIX 22 22 SER A 717 ASN A 726 1 10 HELIX 23 23 SER A 728 PHE A 743 1 16 HELIX 24 24 PHE A 743 GLY A 761 1 19 HELIX 25 25 ASN A 780 GLU A 818 1 39 HELIX 26 26 GLU A 840 GLN A 854 1 15 HELIX 27 27 THR D 308 ALA D 313 5 6 HELIX 28 28 ARG D 347 LEU D 352 1 6 HELIX 29 29 ASP D 354 ASP D 363 1 10 HELIX 30 30 ASP D 372 TRP D 382 1 11 HELIX 31 31 LEU D 394 ASP D 402 1 9 HELIX 32 32 PRO D 403 GLY D 406 5 4 HELIX 33 33 ASP D 409 MET D 416 1 8 HELIX 34 34 PRO D 424 GLY D 430 1 7 HELIX 35 35 LYS D 431 ARG D 435 5 5 HELIX 36 36 ASP D 439 ASN D 468 1 30 HELIX 37 37 GLN D 470 LEU D 477 1 8 HELIX 38 38 LEU D 477 GLY D 492 1 16 HELIX 39 39 ASP D 496 GLY D 523 1 28 HELIX 40 40 SER D 530 GLU D 540 1 11 HELIX 41 41 SER D 557 LEU D 564 1 8 HELIX 42 42 GLU D 569 TYR D 587 1 19 HELIX 43 43 ILE D 588 VAL D 595 1 8 HELIX 44 44 LEU D 630 LYS D 635 1 6 HELIX 45 45 ILE D 636 GLN D 638 5 3 HELIX 46 46 GLN D 656 GLU D 667 1 12 HELIX 47 47 ASP D 668 ARG D 677 1 10 HELIX 48 48 ASP D 680 PHE D 690 1 11 HELIX 49 49 THR D 698 TYR D 714 1 17 HELIX 50 50 SER D 717 LEU D 725 1 9 HELIX 51 51 SER D 728 PHE D 743 1 16 HELIX 52 52 PHE D 743 GLY D 761 1 19 HELIX 53 53 PRO D 774 SER D 778 5 5 HELIX 54 54 ASN D 780 GLU D 818 1 39 HELIX 55 55 GLU D 840 GLN D 854 1 15
SHEET 1 A 6 THR A 302 LEU A 303 0 SHEET 2 A 6 GLY A 342 LEU A 346 1 O ARG A 343 N THR A 302 SHEET 3 A 6 GLY A 334 ASN A 339 -1 N VAL A 337 O PHE A 344 SHEET 4 A 6 LYS A 315 GLU A 321 -1 N ALA A 317 O VAL A 338 SHEET 5 A 6 LYS A 367 MET A 370 1 O SER A 369 N ALA A 316 SHEET 6 A 6 VAL A 390 ASP A 393 1 O PHE A 392 N MET A 370 SHEET 1 B 3 LYS A 601 VAL A 602 0 SHEET 2 B 3 VAL A 493 VAL A 495 -1 N VAL A 493 O VAL A 602 SHEET 3 B 3 PHE A 640 VAL A 641 -1 O VAL A 641 N LYS A 494 SHEET 1 C 2 LYS A 549 THR A 550 0 SHEET 2 C 2 GLY A 553 TYR A 554 -1 O GLY A 553 N THR A 550 SHEET 1 D 2 ILE A 605 ASN A 607 0 SHEET 2 D 2 SER A 617 THR A 619 -1 O THR A 619 N ILE A 605 SHEET 1 E 4 HIS A 823 GLN A 827 0 SHEET 2 E 4 GLU A 831 PRO A 837 -1 O ILE A 833 N LEU A 825 SHEET 3 E 4 TRP A 647 TYR A 654 -1 N PHE A 650 O LEU A 834 SHEET 4 E 4 VAL A 864 GLY A 869 -1 O HIS A 867 N ALA A 651 SHEET 1 F 2 TYR A 762 THR A 764 0 SHEET 2 F 2 ARG A 770 TYR A 772 -1 O ARG A 771 N VAL A 763 SHEET 1 G 6 THR D 302 ALA D 304 0 SHEET 2 G 6 GLY D 342 LEU D 346 1 O PHE D 345 N THR D 302 SHEET 3 G 6 GLY D 334 ASN D 339 -1 N ILE D 335 O LEU D 346 SHEET 4 G 6 LYS D 315 GLU D 321 -1 N ALA D 317 O VAL D 338 SHEET 5 G 6 LYS D 367 MET D 370 1 O SER D 369 N ALA D 316 SHEET 6 G 6 VAL D 390 ASP D 393 1 O PHE D 392 N MET D 370 SHEET 1 H 3 LYS D 601 VAL D 602 0 SHEET 2 H 3 VAL D 493 VAL D 495 -1 N VAL D 493 O VAL D 602 SHEET 3 H 3 PHE D 640 VAL D 641 -1 O VAL D 641 N LYS D 494 SHEET 1 I 2 LYS D 549 THR D 550 0 SHEET 2 I 2 GLY D 553 TYR D 554 -1 O GLY D 553 N THR D 550 SHEET 1 J 2 ILE D 605 ASN D 607 0 SHEET 2 J 2 SER D 617 THR D 619 -1 O THR D 619 N ILE D 605 SHEET 1 K 4 HIS D 823 GLN D 827 0 SHEET 2 K 4 GLU D 831 PRO D 837 -1 O ILE D 833 N LEU D 825 SHEET 3 K 4 TRP D 647 TYR D 654 -1 N ALA D 652 O LEU D 832 SHEET 4 K 4 VAL D 864 GLY D 869 -1 O HIS D 867 N ALA D 651 SHEET 1 L 2 TYR D 762 THR D 764 0 SHEET 2 L 2 ARG D 770 TYR D 772 -1 O ARG D 771 N VAL D 763
LINK O3' DC B 28 P DOC B 29 1555 1555 1.63 LINK O3' DC E 28 P DOC E 29 1555 1555 1.61
CISPEP 1 GLU A 620 PRO A 621 0 6.25 CISPEP 2 GLU D 620 PRO D 621 0 -0.82
SITE 1 AC1 18 ARG D 615 GLN D 656 GLU D 658 HIS D 682 SITE 2 AC1 18 ARG D 702 LYS D 706 ALA D 707 TYR D 710 SITE 3 AC1 18 ASP D 830 HOH D1035 HOH D1055 HOH D1060 SITE 4 AC1 18 HOH D1171 HOH D1420 HOH D1595 DOC E 29 SITE 5 AC1 18 DG F 3 DG F 4 SITE 1 AC2 5 ARG A 779 ASN A 780 PRO D 424 HOH D1423 SITE 2 AC2 5 HOH D1603 SITE 1 AC3 5 MET D 299 ALA D 300 ARG D 343 ARG D 677 SITE 2 AC3 5 HOH D1562 SITE 1 AC4 5 ARG D 306 THR D 308 GLU D 309 HOH D1166 SITE 2 AC4 5 HOH D1655 SITE 1 AC5 4 LYS A 730 ARG D 517 GLU D 569 ASN D 573
CRYST1 93.680 109.060 150.090 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010675 0.000000 0.000000 0.00000
SCALE2 0.000000 0.009169 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006663 0.00000