4DSE - Header Asymmetric Unit

HEADER TRANSFERASE/DNA 18-FEB-12 4DSE

TITLE TERNARY COMPLEX OF BACILLUS DNA POLYMERASE I LARGE FRAGMENT F710Y, DNA TITLE 2 DUPLEX, AND RCTP (PAIRED WITH DG OF TEMPLATE) IN PRESENCE OF MG2+

COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: UNP RESIDUES 287-878; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DOC))-3'); COMPND 10 CHAIN: B, E; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: DNA PRIMER STRAND; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(*CP*AP*TP*GP*GP*GP*AP*GP*TP*CP*AP*GP*G)-3'); COMPND 15 CHAIN: C, F; COMPND 16 ENGINEERED: YES; COMPND 17 OTHER_DETAILS: DNA TEMPLATE STRAND

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS KAUSTOPHILUS; SOURCE 3 ORGANISM_TAXID: 235909; SOURCE 4 STRAIN: HTA426; SOURCE 5 GENE: POLA, GK2730; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET30A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES

KEYWDS DNA POLYMERASE I, TRANSFERASE-DNA COMPLEX

EXPDTA X-RAY DIFFRACTION

AUTHOR W.WANG,L.S.BEESE

REVDAT 3 21-NOV-12 4DSE 1 JRNL REVDAT 2 13-JUN-12 4DSE 1 JRNL REVDAT 1 06-JUN-12 4DSE 0

JRNL AUTH W.WANG,E.Y.WU,H.W.HELLINGA,L.S.BEESE JRNL TITL STRUCTURAL FACTORS THAT DETERMINE SELECTIVITY OF A HIGH JRNL TITL 2 FIDELITY DNA POLYMERASE FOR DEOXY-, DIDEOXY-, AND JRNL TITL 3 RIBONUCLEOTIDES. JRNL REF J.BIOL.CHEM. V. 287 28215 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22648417 JRNL DOI 10.1074/JBC.M112.366609

REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH W.WANG,H.W.HELLINGA,L.S.BEESE REMARK 1 TITL STRUCTURAL EVIDENCE FOR THE RARE TAUTOMER HYPOTHESIS OF REMARK 1 TITL 2 SPONTANEOUS MUTAGENESIS. REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 108 17644 2011 REMARK 1 REFN ISSN 0027-8424

REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1026) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.9 REMARK 3 NUMBER OF REFLECTIONS : 156214 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.480 REMARK 3 FREE R VALUE TEST SET COUNT : 7003 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 79.7406 - 5.1886 1.00 6028 311 0.2027 0.2075 REMARK 3 2 5.1886 - 4.1184 1.00 5841 305 0.1487 0.1799 REMARK 3 3 4.1184 - 3.5978 0.97 5631 291 0.1563 0.1693 REMARK 3 4 3.5978 - 3.2689 1.00 5761 291 0.1616 0.1882 REMARK 3 5 3.2689 - 3.0346 1.00 5740 294 0.1785 0.1949 REMARK 3 6 3.0346 - 2.8556 1.00 5713 270 0.1844 0.2107 REMARK 3 7 2.8556 - 2.7126 0.99 5710 249 0.1809 0.2177 REMARK 3 8 2.7126 - 2.5945 0.99 5712 250 0.1723 0.1839 REMARK 3 9 2.5945 - 2.4946 0.99 5684 235 0.1658 0.1929 REMARK 3 10 2.4946 - 2.4085 0.99 5670 226 0.1643 0.2031 REMARK 3 11 2.4085 - 2.3332 0.99 5680 229 0.1635 0.2161 REMARK 3 12 2.3332 - 2.2665 0.89 4314 162 0.1708 0.1992 REMARK 3 13 2.2665 - 2.2069 0.72 1684 90 0.1779 0.1795 REMARK 3 14 2.2069 - 2.1530 0.98 5566 226 0.1626 0.1880 REMARK 3 15 2.1530 - 2.1041 0.98 5630 233 0.1659 0.1926 REMARK 3 16 2.1041 - 2.0593 0.98 5604 216 0.1663 0.1862 REMARK 3 17 2.0593 - 2.0181 0.97 5612 191 0.1719 0.1907 REMARK 3 18 2.0181 - 1.9800 0.96 5551 193 0.1812 0.2073 REMARK 3 19 1.9800 - 1.9446 0.86 4832 254 0.1864 0.2173 REMARK 3 20 1.9117 - 1.8808 0.71 1598 85 0.1962 0.2471 REMARK 3 21 1.8808 - 1.8519 0.91 5155 271 0.1940 0.2254 REMARK 3 22 1.8519 - 1.8247 0.92 5186 273 0.1972 0.2432 REMARK 3 23 1.8247 - 1.7990 0.92 5184 273 0.2011 0.2351 REMARK 3 24 1.7990 - 1.7746 0.92 5162 271 0.2055 0.2506 REMARK 3 25 1.7746 - 1.7516 0.90 5103 269 0.2123 0.2653 REMARK 3 26 1.7516 - 1.7297 0.90 5063 266 0.2114 0.2564 REMARK 3 27 1.7297 - 1.7089 0.89 4980 263 0.2181 0.2552 REMARK 3 28 1.7089 - 1.6890 0.88 4977 262 0.2262 0.2537 REMARK 3 29 1.6890 - 1.6700 0.86 4833 254 0.2425 0.2797 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.23280 REMARK 3 B22 (A**2) : -0.08370 REMARK 3 B33 (A**2) : 0.31650 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 10201 REMARK 3 ANGLE : 1.374 13973 REMARK 3 CHIRALITY : 0.079 1563 REMARK 3 PLANARITY : 0.007 1676 REMARK 3 DIHEDRAL : 14.723 3938 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain 'A' and (resseq 297:372) REMARK 3 ORIGIN FOR THE GROUP (A): 119.0415 -64.3653 24.5527 REMARK 3 T TENSOR REMARK 3 T11: 0.6436 T22: 0.3454 REMARK 3 T33: 0.4537 T12: 0.1139 REMARK 3 T13: 0.1713 T23: -0.0218 REMARK 3 L TENSOR REMARK 3 L11: 1.3741 L22: 1.7064 REMARK 3 L33: 1.9784 L12: 0.3783 REMARK 3 L13: -0.2992 L23: 0.4787 REMARK 3 S TENSOR REMARK 3 S11: -0.1163 S12: 0.2858 S13: -0.4826 REMARK 3 S21: -0.3734 S22: -0.0020 S23: -0.4160 REMARK 3 S31: 0.5214 S32: 0.0726 S33: 0.1460 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain 'A' and (resseq 373:496) REMARK 3 ORIGIN FOR THE GROUP (A): 119.4875 -50.4620 23.9821 REMARK 3 T TENSOR REMARK 3 T11: 0.4260 T22: 0.3710 REMARK 3 T33: 0.2662 T12: 0.0826 REMARK 3 T13: 0.1047 T23: 0.0464 REMARK 3 L TENSOR REMARK 3 L11: 1.0010 L22: 1.7584 REMARK 3 L33: 1.3550 L12: 0.4434 REMARK 3 L13: -0.2835 L23: 0.3768 REMARK 3 S TENSOR REMARK 3 S11: -0.1706 S12: 0.2474 S13: -0.1126 REMARK 3 S21: -0.2853 S22: 0.1384 S23: -0.0579 REMARK 3 S31: 0.3316 S32: 0.2044 S33: 0.0487 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: chain 'A' and (resseq 497:604) REMARK 3 ORIGIN FOR THE GROUP (A): 104.8559 -25.6177 52.2124 REMARK 3 T TENSOR REMARK 3 T11: 0.3967 T22: 0.2494 REMARK 3 T33: 0.2838 T12: -0.0381 REMARK 3 T13: 0.0581 T23: -0.0267 REMARK 3 L TENSOR REMARK 3 L11: 0.8592 L22: 3.4710 REMARK 3 L33: 1.1424 L12: -1.0220 REMARK 3 L13: 0.1654 L23: -0.6879 REMARK 3 S TENSOR REMARK 3 S11: -0.0526 S12: -0.1858 S13: 0.0487 REMARK 3 S21: 0.3865 S22: 0.0989 S23: 0.3480 REMARK 3 S31: -0.1762 S32: -0.0319 S33: -0.0370 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: chain 'A' and (resseq 605:876) REMARK 3 ORIGIN FOR THE GROUP (A): 129.9863 -29.6952 37.3962 REMARK 3 T TENSOR REMARK 3 T11: 0.2780 T22: 0.6141 REMARK 3 T33: 0.3284 T12: -0.1114 REMARK 3 T13: 0.0143 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.9048 L22: 1.3905 REMARK 3 L33: 2.8616 L12: 0.0905 REMARK 3 L13: -0.6661 L23: 0.1567 REMARK 3 S TENSOR REMARK 3 S11: 0.0818 S12: -0.3238 S13: 0.1134 REMARK 3 S21: 0.0897 S22: -0.0730 S23: -0.4482 REMARK 3 S31: -0.3717 S32: 0.9595 S33: 0.0134 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: chain 'D' and (resseq 298:467) REMARK 3 ORIGIN FOR THE GROUP (A): 138.0781 -47.9373 -9.4029 REMARK 3 T TENSOR REMARK 3 T11: 0.0981 T22: 0.0875 REMARK 3 T33: 0.0973 T12: 0.0291 REMARK 3 T13: -0.0104 T23: -0.0217 REMARK 3 L TENSOR REMARK 3 L11: 1.5621 L22: 1.5311 REMARK 3 L33: 1.3067 L12: -0.3258 REMARK 3 L13: 0.3468 L23: 0.5055 REMARK 3 S TENSOR REMARK 3 S11: 0.0557 S12: 0.0346 S13: -0.1415 REMARK 3 S21: -0.0625 S22: 0.0106 S23: -0.0948 REMARK 3 S31: 0.1301 S32: 0.0947 S33: -0.0381 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: chain 'D' and (resseq 468:604) REMARK 3 ORIGIN FOR THE GROUP (A): 122.7280 -20.5077 -30.6364 REMARK 3 T TENSOR REMARK 3 T11: 0.2277 T22: 0.1431 REMARK 3 T33: 0.1500 T12: 0.0132 REMARK 3 T13: 0.0077 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 0.5724 L22: 1.3543 REMARK 3 L33: 1.2361 L12: 0.3740 REMARK 3 L13: -0.0780 L23: -0.6915 REMARK 3 S TENSOR REMARK 3 S11: -0.0772 S12: 0.1849 S13: 0.1354 REMARK 3 S21: -0.3337 S22: 0.1907 S23: 0.1285 REMARK 3 S31: -0.1035 S32: -0.0912 S33: -0.1027 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: chain 'D' and (resseq 605:876) REMARK 3 ORIGIN FOR THE GROUP (A): 118.3419 -18.3904 -8.7002 REMARK 3 T TENSOR REMARK 3 T11: 0.0869 T22: 0.0943 REMARK 3 T33: 0.1273 T12: 0.0110 REMARK 3 T13: 0.0085 T23: 0.0240 REMARK 3 L TENSOR REMARK 3 L11: 1.2673 L22: 1.1805 REMARK 3 L33: 1.1735 L12: -0.0356 REMARK 3 L13: -0.0455 L23: 0.6667 REMARK 3 S TENSOR REMARK 3 S11: 0.0453 S12: 0.1282 S13: 0.2307 REMARK 3 S21: -0.1430 S22: -0.0661 S23: 0.0849 REMARK 3 S31: -0.1904 S32: -0.0698 S33: 0.0210 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: chain 'B' and (resseq 21:29) REMARK 3 ORIGIN FOR THE GROUP (A): 108.7192 -28.2795 40.2683 REMARK 3 T TENSOR REMARK 3 T11: 0.4468 T22: 0.2032 REMARK 3 T33: 0.3321 T12: -0.0517 REMARK 3 T13: -0.0650 T23: -0.0356 REMARK 3 L TENSOR REMARK 3 L11: 3.8708 L22: 1.9046 REMARK 3 L33: 3.8288 L12: 0.3326 REMARK 3 L13: 0.2974 L23: 0.4349 REMARK 3 S TENSOR REMARK 3 S11: -0.4272 S12: 0.0864 S13: 0.1186 REMARK 3 S21: -0.6384 S22: 0.1312 S23: 0.3685 REMARK 3 S31: -0.3093 S32: 0.1763 S33: 0.2180 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: chain 'C' and (resseq 2:12) REMARK 3 ORIGIN FOR THE GROUP (A): 108.7296 -31.1949 39.2013 REMARK 3 T TENSOR REMARK 3 T11: 0.2844 T22: 0.2140 REMARK 3 T33: 0.2691 T12: -0.0105 REMARK 3 T13: 0.0038 T23: 0.0262 REMARK 3 L TENSOR REMARK 3 L11: 3.8766 L22: 3.2690 REMARK 3 L33: 2.3687 L12: 0.3057 REMARK 3 L13: -0.4881 L23: 0.2062 REMARK 3 S TENSOR REMARK 3 S11: -0.0819 S12: -0.0995 S13: 0.1835 REMARK 3 S21: -0.1790 S22: -0.0447 S23: 0.5990 REMARK 3 S31: -0.0741 S32: 0.0528 S33: 0.2243 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: chain 'E' and (resseq 21:29) REMARK 3 ORIGIN FOR THE GROUP (A): 129.8698 -18.6334 -27.1326 REMARK 3 T TENSOR REMARK 3 T11: 0.2068 T22: 0.1559 REMARK 3 T33: 0.2830 T12: 0.0337 REMARK 3 T13: 0.0388 T23: 0.0196 REMARK 3 L TENSOR REMARK 3 L11: 2.4981 L22: 0.9360 REMARK 3 L33: 3.7413 L12: 1.2062 REMARK 3 L13: -1.3723 L23: -0.6562 REMARK 3 S TENSOR REMARK 3 S11: -0.0738 S12: 0.1795 S13: 0.2139 REMARK 3 S21: -0.0146 S22: 0.1511 S23: -0.3663 REMARK 3 S31: 0.0375 S32: 0.0687 S33: -0.1017 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: chain 'F' and (resseq 1:12) REMARK 3 ORIGIN FOR THE GROUP (A): 131.3453 -17.3897 -23.9008 REMARK 3 T TENSOR REMARK 3 T11: 0.2156 T22: 0.1809 REMARK 3 T33: 0.2157 T12: -0.0366 REMARK 3 T13: 0.0872 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.2134 L22: 0.7034 REMARK 3 L33: 1.7015 L12: -0.5211 REMARK 3 L13: -0.7105 L23: -0.5184 REMARK 3 S TENSOR REMARK 3 S11: 0.1386 S12: 0.1314 S13: 0.2774 REMARK 3 S21: -0.3717 S22: 0.0863 S23: -0.3314 REMARK 3 S31: -0.3640 S32: 0.1197 S33: -0.2134 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 4DSE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-FEB-12. REMARK 100 THE RCSB ID CODE IS RCSB070722.

REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 12.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1159 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 163886 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.5100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.680 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2HVI REMARK 200 REMARK 200 REMARK: NULL

REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50% SATURATED AMMONIUM SULFATE, 2.5% REMARK 280 MPD, 10MM MGSO4, 100MM MES, PH 5.8, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 290K

REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 46.92500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.30000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.75500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.30000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.92500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.75500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL

REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A MONOMER. THERE ARE 2 BIOLOGICAL REMARK 300 UNITS IN THE ASYMMETRIC UNIT (CHAINS A, B, & C AND CHAINS D, E, & REMARK 300 F).

REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000

REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 285 REMARK 465 GLU A 286 REMARK 465 SER A 287 REMARK 465 PRO A 288 REMARK 465 SER A 289 REMARK 465 SER A 290 REMARK 465 GLU A 291 REMARK 465 GLU A 292 REMARK 465 GLU A 293 REMARK 465 LYS A 294 REMARK 465 PRO A 295 REMARK 465 LEU A 296 REMARK 465 ASP A 678 REMARK 465 LEU A 679 REMARK 465 ASP A 680 REMARK 465 ILE A 681 REMARK 465 HIS A 682 REMARK 465 THR A 683 REMARK 465 LYS A 684 REMARK 465 THR A 685 REMARK 465 ALA A 686 REMARK 465 MET A 687 REMARK 465 ASP A 688 REMARK 465 ILE A 689 REMARK 465 PHE A 690 REMARK 465 GLN A 691 REMARK 465 VAL A 692 REMARK 465 SER A 693 REMARK 465 GLU A 694 REMARK 465 ASP A 695 REMARK 465 GLU A 696 REMARK 465 VAL A 697 REMARK 465 THR A 698 REMARK 465 PRO A 699 REMARK 465 ASN A 700 REMARK 465 MET A 701 REMARK 465 ARG A 702 REMARK 465 ARG A 703 REMARK 465 GLN A 704 REMARK 465 ALA A 705 REMARK 465 LYS A 706 REMARK 465 ALA A 707 REMARK 465 VAL A 708 REMARK 465 ILE A 712 REMARK 465 VAL A 713 REMARK 465 TYR A 714 REMARK 465 MET D 285 REMARK 465 GLU D 286 REMARK 465 SER D 287 REMARK 465 PRO D 288 REMARK 465 SER D 289 REMARK 465 SER D 290 REMARK 465 GLU D 291 REMARK 465 GLU D 292 REMARK 465 GLU D 293 REMARK 465 LYS D 294 REMARK 465 PRO D 295 REMARK 465 LEU D 296 REMARK 465 ALA D 297 REMARK 465 DC C 0 REMARK 465 DA C 1 REMARK 465 DT C 2 REMARK 465 DG C 3 REMARK 465 DC F 0

REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS D 298 CG CD CE NZ REMARK 470 DA F 1 P OP1 OP2

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE ARG D 596 O HOH D 1096 1.34 REMARK 500 HG CYS D 845 O HOH D 1121 1.37 REMARK 500 HG CYS D 845 O HOH D 1123 1.41 REMARK 500 HH12 ARG D 629 O HOH D 1383 1.54 REMARK 500 HE ARG D 499 O HOH D 1386 1.54 REMARK 500 HE ARG D 784 O HOH D 1438 1.57 REMARK 500 O HOH D 1103 O HOH D 1696 1.80 REMARK 500 O HOH A 1047 O HOH A 1103 1.84 REMARK 500 O HOH D 1696 O HOH D 1697 1.84 REMARK 500 O HOH A 979 O HOH A 1070 1.91 REMARK 500 O HOH A 1231 O HOH A 1233 1.92 REMARK 500 O GLN A 821 O HOH A 1129 1.96 REMARK 500 O HOH C 118 O HOH C 122 1.96 REMARK 500 O HOH D 1305 O HOH D 1393 1.96 REMARK 500 O HOH D 1471 O HOH D 1722 1.99 REMARK 500 O HOH D 1103 O HOH D 1697 2.02 REMARK 500 O HOH A 1170 O HOH A 1178 2.03 REMARK 500 O HOH D 1200 O HOH D 1468 2.03 REMARK 500 OE2 GLU D 340 O HOH D 1600 2.04 REMARK 500 OD1 ASP D 305 O HOH D 1641 2.05 REMARK 500 O HOH D 1650 O HOH D 1698 2.07 REMARK 500 OE2 GLU D 325 O HOH D 1119 2.08 REMARK 500 OE1 GLU D 631 O HOH D 1660 2.09 REMARK 500 O HOH D 1588 O HOH F 133 2.09 REMARK 500 O HOH D 1610 O HOH D 1681 2.09 REMARK 500 O HOH D 1536 O HOH D 1705 2.09 REMARK 500 OG1 THR D 550 O HOH D 1637 2.09 REMARK 500 O HOH D 1615 O HOH D 1621 2.09 REMARK 500 OD2 ASP A 559 O HOH A 1009 2.10 REMARK 500 NH1 ARG D 629 O HOH D 1383 2.10 REMARK 500 O3G CTP D 901 O HOH D 1261 2.10 REMARK 500 O HOH A 1102 O HOH D 1721 2.11 REMARK 500 O HOH E 107 O HOH E 115 2.11 REMARK 500 O HOH D 1602 O HOH D 1604 2.14 REMARK 500 O HOH D 1516 O HOH D 1646 2.15 REMARK 500 O HOH D 1276 O HOH D 1598 2.15 REMARK 500 OE2 GLU D 520 O HOH D 1492 2.16 REMARK 500 O HOH D 1450 O HOH D 1672 2.17 REMARK 500 O HOH D 1337 O HOH D 1423 2.18 REMARK 500 O HOH D 1584 O HOH D 1680 2.19 REMARK 500 NE2 GLN D 418 O HOH D 1399 2.19 REMARK 500 NE ARG D 596 O HOH D 1096 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH D 1171 O HOH D 1400 4445 1.53 REMARK 500 HZ3 LYS A 505 OE1 GLN D 356 2745 1.55 REMARK 500 O HOH A 997 O HOH D 1358 2745 1.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC E 26 O3' DC E 26 C3' -0.047 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG D 634 CG - CD - NE ANGL. DEV. = -13.2 DEGREES REMARK 500 ARG D 660 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DT B 23 O4' - C1' - N1 ANGL. DEV. = -7.1 DEGREES REMARK 500 DA B 25 O5' - P - OP1 ANGL. DEV. = 8.7 DEGREES REMARK 500 DA B 25 O4' - C4' - C3' ANGL. DEV. = -3.9 DEGREES REMARK 500 DC B 26 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DT B 27 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG C 5 O4' - C4' - C3' ANGL. DEV. = -2.4 DEGREES REMARK 500 DG C 7 C2 - N3 - C4 ANGL. DEV. = 3.5 DEGREES REMARK 500 DT C 8 O4' - C1' - N1 ANGL. DEV. = -6.4 DEGREES REMARK 500 DG C 12 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 DT E 23 O4' - C1' - N1 ANGL. DEV. = -6.2 DEGREES REMARK 500 DT E 23 N3 - C4 - O4 ANGL. DEV. = 4.1 DEGREES REMARK 500 DC E 26 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DT E 27 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT F 2 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DG F 4 O5' - P - OP2 ANGL. DEV. = -6.2 DEGREES REMARK 500 DG F 4 O4' - C1' - C2' ANGL. DEV. = 3.3 DEGREES REMARK 500 DG F 4 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 DA F 6 OP1 - P - OP2 ANGL. DEV. = -10.2 DEGREES REMARK 500 DA F 6 C5 - N7 - C8 ANGL. DEV. = -3.2 DEGREES REMARK 500 DT F 8 O4' - C1' - N1 ANGL. DEV. = -7.9 DEGREES REMARK 500 DA F 10 O4' - C1' - N9 ANGL. DEV. = -4.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 372 63.42 60.67 REMARK 500 ASP A 402 98.29 -165.46 REMARK 500 ASP A 408 14.34 -141.49 REMARK 500 ALA A 421 43.03 -87.05 REMARK 500 LEU A 477 -69.72 -124.60 REMARK 500 GLU A 540 -60.61 -109.53 REMARK 500 ILE A 588 -71.08 -107.11 REMARK 500 ILE A 628 -25.86 -150.16 REMARK 500 PHE A 743 73.06 -117.77 REMARK 500 HIS A 768 20.42 84.18 REMARK 500 HIS A 829 -51.75 80.27 REMARK 500 ASP D 402 95.10 -168.13 REMARK 500 ALA D 421 45.54 -90.67 REMARK 500 LEU D 477 -65.00 -124.07 REMARK 500 ILE D 588 -69.84 -104.47 REMARK 500 LEU D 610 -50.70 -124.84 REMARK 500 ILE D 628 -27.35 -146.00 REMARK 500 ASN D 726 57.05 39.38 REMARK 500 HIS D 768 19.35 82.00 REMARK 500 HIS D 829 -54.32 70.28 REMARK 500 REMARK 500 REMARK: NULL

REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1168 DISTANCE = 5.16 ANGSTROMS REMARK 525 HOH A1169 DISTANCE = 5.57 ANGSTROMS REMARK 525 HOH A1174 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH A1176 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH A1211 DISTANCE = 5.28 ANGSTROMS REMARK 525 HOH D1661 DISTANCE = 7.07 ANGSTROMS REMARK 525 HOH D1663 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH D1676 DISTANCE = 5.76 ANGSTROMS

REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CTP D 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 905

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DS4 RELATED DB: PDB REMARK 900 RELATED ID: 4DS5 RELATED DB: PDB REMARK 900 RELATED ID: 4DSF RELATED DB: PDB

REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT THE PROTEIN WAS ISOLATED FROM A STRAIN OF REMARK 999 GEOBACILLUS SPECIES WHOSE SEQUENCE IS NOT AVAILABLE IN THE UNIPROT REMARK 999 DATABASE. IT DIFFERS FROM UNP Q5KWC1 BY THIS SINGLE RESIDUE

DBREF 4DSE A 285 876 UNP Q5KWC1 Q5KWC1_GEOKA 287 878 DBREF 4DSE D 285 876 UNP Q5KWC1 Q5KWC1_GEOKA 287 878 DBREF 4DSE B 21 29 PDB 4DSE 4DSE 21 29 DBREF 4DSE E 21 29 PDB 4DSE 4DSE 21 29 DBREF 4DSE C 0 12 PDB 4DSE 4DSE 0 12 DBREF 4DSE F 0 12 PDB 4DSE 4DSE 0 12

SEQADV 4DSE ALA A 598 UNP Q5KWC1 ASP 600 ENGINEERED MUTATION SEQADV 4DSE TYR A 710 UNP Q5KWC1 PHE 712 ENGINEERED MUTATION SEQADV 4DSE HIS A 823 UNP Q5KWC1 ARG 825 SEE REMARK 999 SEQADV 4DSE ALA D 598 UNP Q5KWC1 ASP 600 ENGINEERED MUTATION SEQADV 4DSE TYR D 710 UNP Q5KWC1 PHE 712 ENGINEERED MUTATION SEQADV 4DSE HIS D 823 UNP Q5KWC1 ARG 825 SEE REMARK 999

SEQRES 1 A 592 MET GLU SER PRO SER SER GLU GLU GLU LYS PRO LEU ALA SEQRES 2 A 592 LYS MET ALA PHE THR LEU ALA ASP ARG VAL THR GLU GLU SEQRES 3 A 592 MET LEU ALA ASP LYS ALA ALA LEU VAL VAL GLU VAL VAL SEQRES 4 A 592 GLU GLU ASN TYR HIS ASP ALA PRO ILE VAL GLY ILE ALA SEQRES 5 A 592 VAL VAL ASN GLU HIS GLY ARG PHE PHE LEU ARG PRO GLU SEQRES 6 A 592 THR ALA LEU ALA ASP PRO GLN PHE VAL ALA TRP LEU GLY SEQRES 7 A 592 ASP GLU THR LYS LYS LYS SER MET PHE ASP SER LYS ARG SEQRES 8 A 592 ALA ALA VAL ALA LEU LYS TRP LYS GLY ILE GLU LEU CYS SEQRES 9 A 592 GLY VAL SER PHE ASP LEU LEU LEU ALA ALA TYR LEU LEU SEQRES 10 A 592 ASP PRO ALA GLN GLY VAL ASP ASP VAL ALA ALA ALA ALA SEQRES 11 A 592 LYS MET LYS GLN TYR GLU ALA VAL ARG PRO ASP GLU ALA SEQRES 12 A 592 VAL TYR GLY LYS GLY ALA LYS ARG ALA VAL PRO ASP GLU SEQRES 13 A 592 PRO VAL LEU ALA GLU HIS LEU VAL ARG LYS ALA ALA ALA SEQRES 14 A 592 ILE TRP GLU LEU GLU ARG PRO PHE LEU ASP GLU LEU ARG SEQRES 15 A 592 ARG ASN GLU GLN ASP ARG LEU LEU VAL GLU LEU GLU GLN SEQRES 16 A 592 PRO LEU SER SER ILE LEU ALA GLU MET GLU PHE ALA GLY SEQRES 17 A 592 VAL LYS VAL ASP THR LYS ARG LEU GLU GLN MET GLY LYS SEQRES 18 A 592 GLU LEU ALA GLU GLN LEU GLY THR VAL GLU GLN ARG ILE SEQRES 19 A 592 TYR GLU LEU ALA GLY GLN GLU PHE ASN ILE ASN SER PRO SEQRES 20 A 592 LYS GLN LEU GLY VAL ILE LEU PHE GLU LYS LEU GLN LEU SEQRES 21 A 592 PRO VAL LEU LYS LYS THR LYS THR GLY TYR SER THR SER SEQRES 22 A 592 ALA ASP VAL LEU GLU LYS LEU ALA PRO TYR HIS GLU ILE SEQRES 23 A 592 VAL GLU ASN ILE LEU HIS TYR ARG GLN LEU GLY LYS LEU SEQRES 24 A 592 GLN SER THR TYR ILE GLU GLY LEU LEU LYS VAL VAL ARG SEQRES 25 A 592 PRO ALA THR LYS LYS VAL HIS THR ILE PHE ASN GLN ALA SEQRES 26 A 592 LEU THR GLN THR GLY ARG LEU SER SER THR GLU PRO ASN SEQRES 27 A 592 LEU GLN ASN ILE PRO ILE ARG LEU GLU GLU GLY ARG LYS SEQRES 28 A 592 ILE ARG GLN ALA PHE VAL PRO SER GLU SER ASP TRP LEU SEQRES 29 A 592 ILE PHE ALA ALA ASP TYR SER GLN ILE GLU LEU ARG VAL SEQRES 30 A 592 LEU ALA HIS ILE ALA GLU ASP ASP ASN LEU MET GLU ALA SEQRES 31 A 592 PHE ARG ARG ASP LEU ASP ILE HIS THR LYS THR ALA MET SEQRES 32 A 592 ASP ILE PHE GLN VAL SER GLU ASP GLU VAL THR PRO ASN SEQRES 33 A 592 MET ARG ARG GLN ALA LYS ALA VAL ASN TYR GLY ILE VAL SEQRES 34 A 592 TYR GLY ILE SER ASP TYR GLY LEU ALA GLN ASN LEU ASN SEQRES 35 A 592 ILE SER ARG LYS GLU ALA ALA GLU PHE ILE GLU ARG TYR SEQRES 36 A 592 PHE GLU SER PHE PRO GLY VAL LYS ARG TYR MET GLU ASN SEQRES 37 A 592 ILE VAL GLN GLU ALA LYS GLN LYS GLY TYR VAL THR THR SEQRES 38 A 592 LEU LEU HIS ARG ARG ARG TYR LEU PRO ASP ILE THR SER SEQRES 39 A 592 ARG ASN PHE ASN VAL ARG SER PHE ALA GLU ARG MET ALA SEQRES 40 A 592 MET ASN THR PRO ILE GLN GLY SER ALA ALA ASP ILE ILE SEQRES 41 A 592 LYS LYS ALA MET ILE ASP LEU ASN ALA ARG LEU LYS GLU SEQRES 42 A 592 GLU ARG LEU GLN ALA HIS LEU LEU LEU GLN VAL HIS ASP SEQRES 43 A 592 GLU LEU ILE LEU GLU ALA PRO LYS GLU GLU MET GLU ARG SEQRES 44 A 592 LEU CYS ARG LEU VAL PRO GLU VAL MET GLU GLN ALA VAL SEQRES 45 A 592 THR LEU ARG VAL PRO LEU LYS VAL ASP TYR HIS TYR GLY SEQRES 46 A 592 SER THR TRP TYR ASP ALA LYS SEQRES 1 D 592 MET GLU SER PRO SER SER GLU GLU GLU LYS PRO LEU ALA SEQRES 2 D 592 LYS MET ALA PHE THR LEU ALA ASP ARG VAL THR GLU GLU SEQRES 3 D 592 MET LEU ALA ASP LYS ALA ALA LEU VAL VAL GLU VAL VAL SEQRES 4 D 592 GLU GLU ASN TYR HIS ASP ALA PRO ILE VAL GLY ILE ALA SEQRES 5 D 592 VAL VAL ASN GLU HIS GLY ARG PHE PHE LEU ARG PRO GLU SEQRES 6 D 592 THR ALA LEU ALA ASP PRO GLN PHE VAL ALA TRP LEU GLY SEQRES 7 D 592 ASP GLU THR LYS LYS LYS SER MET PHE ASP SER LYS ARG SEQRES 8 D 592 ALA ALA VAL ALA LEU LYS TRP LYS GLY ILE GLU LEU CYS SEQRES 9 D 592 GLY VAL SER PHE ASP LEU LEU LEU ALA ALA TYR LEU LEU SEQRES 10 D 592 ASP PRO ALA GLN GLY VAL ASP ASP VAL ALA ALA ALA ALA SEQRES 11 D 592 LYS MET LYS GLN TYR GLU ALA VAL ARG PRO ASP GLU ALA SEQRES 12 D 592 VAL TYR GLY LYS GLY ALA LYS ARG ALA VAL PRO ASP GLU SEQRES 13 D 592 PRO VAL LEU ALA GLU HIS LEU VAL ARG LYS ALA ALA ALA SEQRES 14 D 592 ILE TRP GLU LEU GLU ARG PRO PHE LEU ASP GLU LEU ARG SEQRES 15 D 592 ARG ASN GLU GLN ASP ARG LEU LEU VAL GLU LEU GLU GLN SEQRES 16 D 592 PRO LEU SER SER ILE LEU ALA GLU MET GLU PHE ALA GLY SEQRES 17 D 592 VAL LYS VAL ASP THR LYS ARG LEU GLU GLN MET GLY LYS SEQRES 18 D 592 GLU LEU ALA GLU GLN LEU GLY THR VAL GLU GLN ARG ILE SEQRES 19 D 592 TYR GLU LEU ALA GLY GLN GLU PHE ASN ILE ASN SER PRO SEQRES 20 D 592 LYS GLN LEU GLY VAL ILE LEU PHE GLU LYS LEU GLN LEU SEQRES 21 D 592 PRO VAL LEU LYS LYS THR LYS THR GLY TYR SER THR SER SEQRES 22 D 592 ALA ASP VAL LEU GLU LYS LEU ALA PRO TYR HIS GLU ILE SEQRES 23 D 592 VAL GLU ASN ILE LEU HIS TYR ARG GLN LEU GLY LYS LEU SEQRES 24 D 592 GLN SER THR TYR ILE GLU GLY LEU LEU LYS VAL VAL ARG SEQRES 25 D 592 PRO ALA THR LYS LYS VAL HIS THR ILE PHE ASN GLN ALA SEQRES 26 D 592 LEU THR GLN THR GLY ARG LEU SER SER THR GLU PRO ASN SEQRES 27 D 592 LEU GLN ASN ILE PRO ILE ARG LEU GLU GLU GLY ARG LYS SEQRES 28 D 592 ILE ARG GLN ALA PHE VAL PRO SER GLU SER ASP TRP LEU SEQRES 29 D 592 ILE PHE ALA ALA ASP TYR SER GLN ILE GLU LEU ARG VAL SEQRES 30 D 592 LEU ALA HIS ILE ALA GLU ASP ASP ASN LEU MET GLU ALA SEQRES 31 D 592 PHE ARG ARG ASP LEU ASP ILE HIS THR LYS THR ALA MET SEQRES 32 D 592 ASP ILE PHE GLN VAL SER GLU ASP GLU VAL THR PRO ASN SEQRES 33 D 592 MET ARG ARG GLN ALA LYS ALA VAL ASN TYR GLY ILE VAL SEQRES 34 D 592 TYR GLY ILE SER ASP TYR GLY LEU ALA GLN ASN LEU ASN SEQRES 35 D 592 ILE SER ARG LYS GLU ALA ALA GLU PHE ILE GLU ARG TYR SEQRES 36 D 592 PHE GLU SER PHE PRO GLY VAL LYS ARG TYR MET GLU ASN SEQRES 37 D 592 ILE VAL GLN GLU ALA LYS GLN LYS GLY TYR VAL THR THR SEQRES 38 D 592 LEU LEU HIS ARG ARG ARG TYR LEU PRO ASP ILE THR SER SEQRES 39 D 592 ARG ASN PHE ASN VAL ARG SER PHE ALA GLU ARG MET ALA SEQRES 40 D 592 MET ASN THR PRO ILE GLN GLY SER ALA ALA ASP ILE ILE SEQRES 41 D 592 LYS LYS ALA MET ILE ASP LEU ASN ALA ARG LEU LYS GLU SEQRES 42 D 592 GLU ARG LEU GLN ALA HIS LEU LEU LEU GLN VAL HIS ASP SEQRES 43 D 592 GLU LEU ILE LEU GLU ALA PRO LYS GLU GLU MET GLU ARG SEQRES 44 D 592 LEU CYS ARG LEU VAL PRO GLU VAL MET GLU GLN ALA VAL SEQRES 45 D 592 THR LEU ARG VAL PRO LEU LYS VAL ASP TYR HIS TYR GLY SEQRES 46 D 592 SER THR TRP TYR ASP ALA LYS SEQRES 1 B 9 DC DC DT DG DA DC DT DC DOC SEQRES 1 C 13 DC DA DT DG DG DG DA DG DT DC DA DG DG SEQRES 1 E 9 DC DC DT DG DA DC DT DC DOC SEQRES 1 F 13 DC DA DT DG DG DG DA DG DT DC DA DG DG

MODRES 4DSE DOC B 29 DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE MODRES 4DSE DOC E 29 DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE

HET DOC B 29 28 HET DOC E 29 28 HET CTP D 901 41 HET SO4 D 902 5 HET SO4 D 903 5 HET SO4 D 904 5 HET SO4 D 905 5

HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM CTP CYTIDINE-5'-TRIPHOSPHATE HETNAM SO4 SULFATE ION

FORMUL 3 DOC 2(C9 H14 N3 O6 P) FORMUL 7 CTP C9 H16 N3 O14 P3 FORMUL 8 SO4 4(O4 S 2-) FORMUL 12 HOH *1266(H2 O)

HELIX 1 1 THR A 308 LEU A 312 5 5 HELIX 2 2 ARG A 347 LEU A 352 1 6 HELIX 3 3 ASP A 354 ASP A 363 1 10 HELIX 4 4 ASP A 372 LYS A 383 1 12 HELIX 5 5 LEU A 394 ASP A 402 1 9 HELIX 6 6 PRO A 403 GLY A 406 5 4 HELIX 7 7 ASP A 409 LYS A 415 1 7 HELIX 8 8 MET A 416 GLN A 418 5 3 HELIX 9 9 PRO A 424 GLY A 430 1 7 HELIX 10 10 LYS A 431 ARG A 435 5 5 HELIX 11 11 ASP A 439 ASN A 468 1 30 HELIX 12 12 GLN A 470 LEU A 477 1 8 HELIX 13 13 LEU A 477 GLY A 492 1 16 HELIX 14 14 ASP A 496 GLY A 523 1 28 HELIX 15 15 SER A 530 GLU A 540 1 11 HELIX 16 16 SER A 557 LEU A 564 1 8 HELIX 17 17 GLU A 569 ILE A 588 1 20 HELIX 18 18 ILE A 588 LYS A 593 1 6 HELIX 19 19 LEU A 630 LYS A 635 1 6 HELIX 20 20 ILE A 636 GLN A 638 5 3 HELIX 21 21 GLN A 656 GLU A 667 1 12 HELIX 22 22 ASP A 668 ARG A 677 1 10 HELIX 23 23 SER A 717 ASN A 726 1 10 HELIX 24 24 SER A 728 PHE A 743 1 16 HELIX 25 25 PHE A 743 GLY A 761 1 19 HELIX 26 26 ASN A 780 GLU A 818 1 39 HELIX 27 27 GLU A 840 GLN A 854 1 15 HELIX 28 28 THR D 308 LEU D 312 5 5 HELIX 29 29 ARG D 347 LEU D 352 1 6 HELIX 30 30 ASP D 354 ASP D 363 1 10 HELIX 31 31 ASP D 372 LYS D 383 1 12 HELIX 32 32 LEU D 394 ASP D 402 1 9 HELIX 33 33 PRO D 403 GLY D 406 5 4 HELIX 34 34 ASP D 409 MET D 416 1 8 HELIX 35 35 PRO D 424 GLY D 430 1 7 HELIX 36 36 LYS D 431 ARG D 435 5 5 HELIX 37 37 ASP D 439 ASN D 468 1 30 HELIX 38 38 GLN D 470 LEU D 477 1 8 HELIX 39 39 LEU D 477 GLY D 492 1 16 HELIX 40 40 ASP D 496 GLY D 523 1 28 HELIX 41 41 SER D 530 GLU D 540 1 11 HELIX 42 42 SER D 557 LEU D 564 1 8 HELIX 43 43 GLU D 569 TYR D 587 1 19 HELIX 44 44 ILE D 588 VAL D 595 1 8 HELIX 45 45 LEU D 630 LYS D 635 1 6 HELIX 46 46 ILE D 636 GLN D 638 5 3 HELIX 47 47 GLN D 656 GLU D 667 1 12 HELIX 48 48 ASP D 668 ARG D 677 1 10 HELIX 49 49 ASP D 680 PHE D 690 1 11 HELIX 50 50 THR D 698 TYR D 714 1 17 HELIX 51 51 SER D 717 LEU D 725 1 9 HELIX 52 52 SER D 728 PHE D 743 1 16 HELIX 53 53 PHE D 743 GLY D 761 1 19 HELIX 54 54 PRO D 774 SER D 778 5 5 HELIX 55 55 ASN D 780 GLU D 818 1 39 HELIX 56 56 GLU D 840 GLN D 854 1 15

SHEET 1 A 6 THR A 302 LEU A 303 0 SHEET 2 A 6 GLY A 342 LEU A 346 1 O ARG A 343 N THR A 302 SHEET 3 A 6 ILE A 332 ASN A 339 -1 N ILE A 335 O LEU A 346 SHEET 4 A 6 LYS A 315 VAL A 322 -1 N GLU A 321 O VAL A 333 SHEET 5 A 6 LYS A 367 MET A 370 1 O SER A 369 N ALA A 316 SHEET 6 A 6 VAL A 390 ASP A 393 1 O PHE A 392 N MET A 370 SHEET 1 B 3 LYS A 601 VAL A 602 0 SHEET 2 B 3 VAL A 493 VAL A 495 -1 N VAL A 493 O VAL A 602 SHEET 3 B 3 PHE A 640 VAL A 641 -1 O VAL A 641 N LYS A 494 SHEET 1 C 2 LYS A 549 THR A 550 0 SHEET 2 C 2 GLY A 553 TYR A 554 -1 O GLY A 553 N THR A 550 SHEET 1 D 2 ILE A 605 ASN A 607 0 SHEET 2 D 2 SER A 617 THR A 619 -1 O THR A 619 N ILE A 605 SHEET 1 E 4 HIS A 823 GLN A 827 0 SHEET 2 E 4 GLU A 831 PRO A 837 -1 O ILE A 833 N LEU A 825 SHEET 3 E 4 TRP A 647 TYR A 654 -1 N PHE A 650 O LEU A 834 SHEET 4 E 4 VAL A 864 GLY A 869 -1 O HIS A 867 N ALA A 651 SHEET 1 F 2 TYR A 762 THR A 764 0 SHEET 2 F 2 ARG A 770 TYR A 772 -1 O ARG A 771 N VAL A 763 SHEET 1 G 6 THR D 302 LEU D 303 0 SHEET 2 G 6 GLY D 342 LEU D 346 1 O PHE D 345 N THR D 302 SHEET 3 G 6 GLY D 334 ASN D 339 -1 N ILE D 335 O LEU D 346 SHEET 4 G 6 LYS D 315 GLU D 321 -1 N ALA D 317 O VAL D 338 SHEET 5 G 6 LYS D 367 MET D 370 1 O SER D 369 N ALA D 316 SHEET 6 G 6 VAL D 390 ASP D 393 1 O PHE D 392 N MET D 370 SHEET 1 H 3 LYS D 601 VAL D 602 0 SHEET 2 H 3 VAL D 493 VAL D 495 -1 N VAL D 493 O VAL D 602 SHEET 3 H 3 PHE D 640 VAL D 641 -1 O VAL D 641 N LYS D 494 SHEET 1 I 2 LYS D 549 THR D 550 0 SHEET 2 I 2 GLY D 553 TYR D 554 -1 O GLY D 553 N THR D 550 SHEET 1 J 2 ILE D 605 ASN D 607 0 SHEET 2 J 2 SER D 617 THR D 619 -1 O THR D 619 N ILE D 605 SHEET 1 K 4 HIS D 823 GLN D 827 0 SHEET 2 K 4 GLU D 831 PRO D 837 -1 O ILE D 833 N LEU D 825 SHEET 3 K 4 TRP D 647 TYR D 654 -1 N PHE D 650 O LEU D 834 SHEET 4 K 4 VAL D 864 GLY D 869 -1 O HIS D 867 N ALA D 651 SHEET 1 L 2 TYR D 762 THR D 764 0 SHEET 2 L 2 ARG D 770 TYR D 772 -1 O ARG D 771 N VAL D 763

LINK O3' DC B 28 P DOC B 29 1555 1555 1.63 LINK O3' DC E 28 P DOC E 29 1555 1555 1.62

CISPEP 1 GLU A 620 PRO A 621 0 4.59 CISPEP 2 GLU D 620 PRO D 621 0 -0.60

SITE 1 AC1 21 ARG D 615 GLN D 656 GLU D 658 HIS D 682 SITE 2 AC1 21 ARG D 702 LYS D 706 ALA D 707 TYR D 710 SITE 3 AC1 21 ASP D 830 HOH D1015 HOH D1043 HOH D1052 SITE 4 AC1 21 HOH D1147 HOH D1214 HOH D1261 HOH D1320 SITE 5 AC1 21 HOH D1683 HOH D1709 DOC E 29 DG F 3 SITE 6 AC1 21 DG F 4 SITE 1 AC2 5 ARG A 779 ASN A 780 PRO D 424 HOH D1454 SITE 2 AC2 5 HOH D1470 SITE 1 AC3 4 MET D 299 ALA D 300 ARG D 343 ARG D 677 SITE 1 AC4 5 LYS A 730 ARG D 517 GLU D 569 ASN D 573 SITE 2 AC4 5 HOH D1715 SITE 1 AC5 4 ARG D 306 THR D 308 GLU D 309 HOH D1194

CRYST1 93.850 109.510 150.600 90.00 90.00 90.00 P 21 21 21 8

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 0.010655 0.000000 0.000000 0.00000

SCALE2 0.000000 0.009132 0.000000 0.00000

SCALE3 0.000000 0.000000 0.006640 0.00000