10 20 30 40 50 60 70 80 4CT3 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER VIRAL PROTEIN 12-MAR-14 4CT3
TITLE METHYLMERCURY CHLORIDE DERIVATIVE STRUCTURE OF THE LYTIC CHAPK DOMAIN TITLE 2 OF THE ENDOLYSIN LYSK FROM STAPHYLOCOCCUS AUREUS BACTERIOPHAGE K
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORF30/ORF32; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: CHAPK, RESIDUES 1-165; COMPND 5 SYNONYM: LYSK; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS PHAGE K; SOURCE 3 ORGANISM_TAXID: 221915; SOURCE 4 ATCC: 19685-B1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: XL1-BLUE; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE60
KEYWDS VIRAL PROTEIN, PEPTIDOGLYCAN, PROTEASE
EXPDTA X-RAY DIFFRACTION
AUTHOR M.SANZ-GAITERO,R.KEARY,C.GARCIA-DOVAL,A.COFFEY,M.J.VAN RAAIJ
REVDAT 1 06-AUG-14 4CT3 0
JRNL AUTH M.SANZ-GAITERO,R.KEARY,C.GARCIA-DOVAL,A.COFFEY,M.J.VAN RAAIJ JRNL TITL CRYSTAL STRUCTURE OF THE LYTIC CHAPK DOMAIN OF THE JRNL TITL 2 ENDOLYSIN LYSK FROM STAPHYLOCOCCUS AUREUS BACTERIOPHAGE K. JRNL REF VIROL.J. V. 11 133 2014 JRNL REFN ISSN 1743-422X JRNL PMID 25064136 JRNL DOI 10.1186/1743-422X-11-133
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.SANZ-GAITERO,R.KEARY,C.GARCIA-DOVAL,A.COFFEY,M.J.VAN RAAIJ REMARK 1 TITL CRYSTALLIZATION OF THE CHAP DOMAIN OF THE ENDOLYSIN FROM REMARK 1 TITL 2 STAPHYLOCOCCUS AUREUS BACTERIOPHAGE K. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 69 1393 2013 REMARK 1 REFN ISSN 1744-3091 REMARK 1 PMID 24316838 REMARK 1 DOI 10.1107/S1744309113030133 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.FENTON,J.C.COONEY,R.P.ROSS,R.D.SLEATOR,O.MCAULIFFE, REMARK 1 AUTH 2 J.O'MAHONY,A.COFFEY REMARK 1 TITL IN SILICO MODELING OF THE STAPHYLOCOCCAL BACTERIOPHAGE- REMARK 1 TITL 2 DERIVED PEPTIDASE CHAP(K). REMARK 1 REF BACTERIOPHAGE V. 1 198 2011 REMARK 1 REFN ISSN 2159-7073 REMARK 1 PMID 23050213 REMARK 1 DOI 10.4161/BACT.1.4.18245 REMARK 1 REFERENCE 3 REMARK 1 AUTH M.HORGAN,G.O'FLYNN,J.GARRY,J.COONEY,A.COFFEY,G.F.FITZGERALD, REMARK 1 AUTH 2 R.P.ROSS,O.MCAULIFFE REMARK 1 TITL PHAGE LYSIN LYSK CAN BE TRUNCATED TO ITS CHAP DOMAIN AND REMARK 1 TITL 2 RETAIN LYTIC ACTIVITY AGAINST LIVE ANTIBIOTIC-RESISTANT REMARK 1 TITL 3 STAPHYLOCOCCI. REMARK 1 REF APPL.ENVIRON.MICROBIOL. V. 75 872 2009 REMARK 1 REFN ISSN 0099-2240 REMARK 1 PMID 19047377 REMARK 1 DOI 10.1128/AEM.01831-08
REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU, REMARK 3 STEINER,NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 64.75 REMARK 3 NUMBER OF REFLECTIONS : 46067 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.18291 REMARK 3 R VALUE (WORKING SET) : 0.18074 REMARK 3 FREE R VALUE : 0.22407 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 2431 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.690 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.781 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1349 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 12.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.279 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5227 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 136 REMARK 3 SOLVENT ATOMS : 770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.9 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.280 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.72 REMARK 3 B22 (A**2) : -1.47 REMARK 3 B33 (A**2) : 1.82 REMARK 3 B12 (A**2) : 0.09 REMARK 3 B13 (A**2) : 0.84 REMARK 3 B23 (A**2) : 0.22 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.192 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.162 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.093 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.913 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5488 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 5079 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7439 ; 1.445 ; 1.939 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11711 ; 1.032 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 781 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6195 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1301 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1682 ; 0.254 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 5107 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2693 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2574 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 209 ; 0.166 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 10 ; 0.052 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 27 ; 0.236 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 145 ; 0.260 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 138 ; 0.197 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.215 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): 1 ; 0.006 ; 0.200 REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2630 ; 1.476 ; 2.019 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2629 ; 1.477 ; 2.019 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3283 ; 2.458 ; 3.021 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2858 ; 1.835 ; 2.225 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4151 ; 2.899 ; 3.236 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 2 165 B 2 165 10092 0.05 0.05 REMARK 3 2 A 2 165 C 2 165 10053 0.05 0.05 REMARK 3 3 A 2 165 D 2 165 10000 0.06 0.05 REMARK 3 4 B 2 165 C 2 165 10027 0.07 0.05 REMARK 3 5 B 2 165 D 2 165 9986 0.07 0.05 REMARK 3 6 C 2 165 D 2 165 10092 0.04 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY
REMARK 4 REMARK 4 4CT3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-MAR-14. REMARK 100 THE PDBE ID CODE IS EBI-59879.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8352 REMARK 200 MONOCHROMATOR : SI111 DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : HORIZONTAL AND VERTICAL REMARK 200 FOCUSSING MIRRORS AND SLITS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL (PILATUS 6M) REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48498 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.69 REMARK 200 RESOLUTION RANGE LOW (A) : 71.92 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NONE REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 64.7 REMARK 200 DATA REDUNDANCY : 3.4 REMARK 200 R MERGE (I) : 0.06 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.80 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 10.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.2 REMARK 200 R MERGE FOR SHELL (I) : 0.62 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.80 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.3 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 MM TRIS-HCL, 22%(W/V) PEG REMARK 280 8000, 0.1 M 4-(2- HYDROXYETHYL)-1-PIPERAZINEETHANESULFONIC REMARK 280 ACID (HEPES)-NAOH PH 6.5
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 CYS A 54 REMARK 465 MET B 1 REMARK 465 CYS B 54 REMARK 465 MET C 1 REMARK 465 CYS C 54 REMARK 465 MET D 1 REMARK 465 CYS D 54
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG A SER B 31 O HOH B 2070 2.18 REMARK 500 NZ LYS C 77 O HOH C 2109 1.98 REMARK 500 NZ LYS D 77 O HOH D 2100 2.09 REMARK 500 O HOH A 2001 O HOH A 2005 2.00 REMARK 500 O HOH A 2046 O HOH A 2047 1.78 REMARK 500 O HOH A 2047 O HOH A 2048 2.06 REMARK 500 O HOH A 2084 O HOH A 2098 1.96 REMARK 500 O HOH A 2091 O HOH A 2190 2.14 REMARK 500 O HOH A 2126 O HOH A 2127 1.79 REMARK 500 O HOH A 2165 O HOH A 2166 1.58 REMARK 500 O HOH A 2166 O HOH A 2167 2.00 REMARK 500 O HOH B 2014 O HOH B 2148 1.87 REMARK 500 O HOH B 2028 O HOH B 2057 1.93 REMARK 500 O HOH B 2047 O HOH B 2048 1.87 REMARK 500 O HOH B 2064 O HOH B 2122 2.09 REMARK 500 O HOH B 2089 O HOH B 2099 1.89 REMARK 500 O HOH B 2095 O HOH B 2181 1.87 REMARK 500 O HOH B 2148 O HOH B 2149 1.66 REMARK 500 O HOH C 2014 O HOH C 2019 1.59 REMARK 500 O HOH C 2015 O HOH C 2027 2.18 REMARK 500 O HOH C 2015 O HOH C 2094 1.57 REMARK 500 O HOH C 2023 O HOH C 2044 2.14 REMARK 500 O HOH C 2027 O HOH C 2088 1.46 REMARK 500 O HOH C 2027 O HOH C 2094 1.96 REMARK 500 O HOH C 2052 O HOH C 2067 1.83 REMARK 500 O HOH C 2055 O HOH C 2120 1.97 REMARK 500 O HOH C 2064 O HOH A 2167 2.17 REMARK 500 O HOH C 2088 O HOH C 2094 2.09 REMARK 500 O HOH C 2098 O HOH C 2102 1.88 REMARK 500 O HOH D 2020 O HOH D 2021 1.71 REMARK 500 O HOH D 2045 O HOH D 2063 2.10 REMARK 500 O HOH D 2069 O HOH A 2118 1.91 REMARK 500 O HOH D 2080 O HOH D 2141 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH D 2168 O HOH A 2181 2565 1.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 32 -12.88 -142.46 REMARK 500 HIS A 51 -136.01 53.00 REMARK 500 TYR B 32 -12.58 -143.25 REMARK 500 HIS B 51 -135.73 53.91 REMARK 500 TYR C 32 -7.76 -142.35 REMARK 500 HIS C 51 -136.38 50.67 REMARK 500 TYR D 32 -8.24 -142.01 REMARK 500 HIS D 51 -137.43 52.81 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CMH A1166 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CMH A1166 SG REMARK 620 2 CL A1167 CL 81.8 REMARK 620 3 HOH A2094 O 95.0 74.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CMH B1166 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B2097 O REMARK 620 2 CMH B1166 SG 93.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CMH C1166 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CMH C1166 SG REMARK 620 2 HOH C2081 O 96.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CMH D1166 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CMH D1166 SG REMARK 620 2 HOH D2077 O 97.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1170 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 45 OD1 REMARK 620 2 ASP A 47 OD1 82.5 REMARK 620 3 TYR A 49 O 102.0 78.4 REMARK 620 4 HIS A 51 O 82.8 155.5 85.7 REMARK 620 5 ASP A 56 OD1 87.5 74.8 150.1 123.9 REMARK 620 6 ASP A 56 OD2 111.7 121.2 142.3 82.6 50.7 REMARK 620 7 HOH A2083 O 162.4 79.9 75.2 114.0 87.1 77.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1169 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 45 OD1 REMARK 620 2 TYR B 49 O 101.7 REMARK 620 3 HIS B 51 O 81.5 84.8 REMARK 620 4 ASP B 47 OD1 83.0 79.3 155.0 REMARK 620 5 ASP B 56 OD1 88.1 152.0 122.8 76.0 REMARK 620 6 ASP B 56 OD2 111.3 141.8 81.6 122.5 50.7 REMARK 620 7 HOH B2088 O 163.9 76.6 114.0 80.9 86.8 76.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D1169 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 56 OD1 REMARK 620 2 ASP D 45 OD1 83.1 REMARK 620 3 ASP D 47 OD1 73.4 82.8 REMARK 620 4 TYR D 49 O 153.5 104.8 82.5 REMARK 620 5 HIS D 51 O 117.7 80.7 158.6 88.7 REMARK 620 6 ASP D 56 OD2 48.4 104.7 118.6 145.5 79.0 REMARK 620 7 HOH D2068 O 88.3 163.2 80.9 77.1 116.1 79.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C1168 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 45 OD1 REMARK 620 2 ASP C 47 OD1 82.7 REMARK 620 3 TYR C 49 O 102.9 80.5 REMARK 620 4 HIS C 51 O 81.3 156.8 86.8 REMARK 620 5 ASP C 56 OD1 84.4 73.7 152.1 121.1 REMARK 620 6 ASP C 56 OD2 107.4 119.8 145.1 81.1 49.9 REMARK 620 7 HOH C2073 O 163.7 81.0 75.0 114.4 90.4 80.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG C1171 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 117 ND1 REMARK 620 2 HOH C2156 O 130.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MMC A1171 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP A 64 O REMARK 620 2 ASP A 67 OD1 88.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MMC B1171 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 67 OD1 REMARK 620 2 TRP B 64 O 82.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MMC D1171 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 67 OD1 REMARK 620 2 TRP D 64 O 87.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MMC C1170 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP C 64 O REMARK 620 2 ASP C 67 OD1 87.5 REMARK 620 N 1
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMH A1166 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1167 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1168 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A1169 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1170 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MMC A1171 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MMC A1172 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A1173 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A1174 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMH B1166 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B1167 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE B1168 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B1169 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MMC B1170 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MMC B1171 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG B1172 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG B1173 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMH C1166 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE C1167 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C1168 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MMC C1169 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MMC C1170 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG C1171 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMH D1166 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D1167 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE D1168 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D1169 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MMC D1170 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MMC D1171 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG D1172
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CSH RELATED DB: PDB REMARK 900 NATIVE STRUCTURE OF THE LYTIC CHAPK DOMAIN OF THE REMARK 900 ENDOLYSIN LYSK FROM STAPHYLOCOCCUS AUREUS BACTERIOPHAGE K
DBREF 4CT3 A 1 165 UNP Q6Y7T6 Q6Y7T6_BPPGK 1 165 DBREF 4CT3 B 1 165 UNP Q6Y7T6 Q6Y7T6_BPPGK 1 165 DBREF 4CT3 C 1 165 UNP Q6Y7T6 Q6Y7T6_BPPGK 1 165 DBREF 4CT3 D 1 165 UNP Q6Y7T6 Q6Y7T6_BPPGK 1 165
SEQRES 1 A 165 MET ALA LYS THR GLN ALA GLU ILE ASN LYS ARG LEU ASP SEQRES 2 A 165 ALA TYR ALA LYS GLY THR VAL ASP SER PRO TYR ARG VAL SEQRES 3 A 165 LYS LYS ALA THR SER TYR ASP PRO SER PHE GLY VAL MET SEQRES 4 A 165 GLU ALA GLY ALA ILE ASP ALA ASP GLY TYR TYR HIS ALA SEQRES 5 A 165 GLN CYS GLN ASP LEU ILE THR ASP TYR VAL LEU TRP LEU SEQRES 6 A 165 THR ASP ASN LYS VAL ARG THR TRP GLY ASN ALA LYS ASP SEQRES 7 A 165 GLN ILE LYS GLN SER TYR GLY THR GLY PHE LYS ILE HIS SEQRES 8 A 165 GLU ASN LYS PRO SER THR VAL PRO LYS LYS GLY TRP ILE SEQRES 9 A 165 ALA VAL PHE THR SER GLY SER TYR GLU GLN TRP GLY HIS SEQRES 10 A 165 ILE GLY ILE VAL TYR ASP GLY GLY ASN THR SER THR PHE SEQRES 11 A 165 THR ILE LEU GLU GLN ASN TRP ASN GLY TYR ALA ASN LYS SEQRES 12 A 165 LYS PRO THR LYS ARG VAL ASP ASN TYR TYR GLY LEU THR SEQRES 13 A 165 HIS PHE ILE GLU ILE PRO VAL LYS ALA SEQRES 1 B 165 MET ALA LYS THR GLN ALA GLU ILE ASN LYS ARG LEU ASP SEQRES 2 B 165 ALA TYR ALA LYS GLY THR VAL ASP SER PRO TYR ARG VAL SEQRES 3 B 165 LYS LYS ALA THR SER TYR ASP PRO SER PHE GLY VAL MET SEQRES 4 B 165 GLU ALA GLY ALA ILE ASP ALA ASP GLY TYR TYR HIS ALA SEQRES 5 B 165 GLN CYS GLN ASP LEU ILE THR ASP TYR VAL LEU TRP LEU SEQRES 6 B 165 THR ASP ASN LYS VAL ARG THR TRP GLY ASN ALA LYS ASP SEQRES 7 B 165 GLN ILE LYS GLN SER TYR GLY THR GLY PHE LYS ILE HIS SEQRES 8 B 165 GLU ASN LYS PRO SER THR VAL PRO LYS LYS GLY TRP ILE SEQRES 9 B 165 ALA VAL PHE THR SER GLY SER TYR GLU GLN TRP GLY HIS SEQRES 10 B 165 ILE GLY ILE VAL TYR ASP GLY GLY ASN THR SER THR PHE SEQRES 11 B 165 THR ILE LEU GLU GLN ASN TRP ASN GLY TYR ALA ASN LYS SEQRES 12 B 165 LYS PRO THR LYS ARG VAL ASP ASN TYR TYR GLY LEU THR SEQRES 13 B 165 HIS PHE ILE GLU ILE PRO VAL LYS ALA SEQRES 1 C 165 MET ALA LYS THR GLN ALA GLU ILE ASN LYS ARG LEU ASP SEQRES 2 C 165 ALA TYR ALA LYS GLY THR VAL ASP SER PRO TYR ARG VAL SEQRES 3 C 165 LYS LYS ALA THR SER TYR ASP PRO SER PHE GLY VAL MET SEQRES 4 C 165 GLU ALA GLY ALA ILE ASP ALA ASP GLY TYR TYR HIS ALA SEQRES 5 C 165 GLN CYS GLN ASP LEU ILE THR ASP TYR VAL LEU TRP LEU SEQRES 6 C 165 THR ASP ASN LYS VAL ARG THR TRP GLY ASN ALA LYS ASP SEQRES 7 C 165 GLN ILE LYS GLN SER TYR GLY THR GLY PHE LYS ILE HIS SEQRES 8 C 165 GLU ASN LYS PRO SER THR VAL PRO LYS LYS GLY TRP ILE SEQRES 9 C 165 ALA VAL PHE THR SER GLY SER TYR GLU GLN TRP GLY HIS SEQRES 10 C 165 ILE GLY ILE VAL TYR ASP GLY GLY ASN THR SER THR PHE SEQRES 11 C 165 THR ILE LEU GLU GLN ASN TRP ASN GLY TYR ALA ASN LYS SEQRES 12 C 165 LYS PRO THR LYS ARG VAL ASP ASN TYR TYR GLY LEU THR SEQRES 13 C 165 HIS PHE ILE GLU ILE PRO VAL LYS ALA SEQRES 1 D 165 MET ALA LYS THR GLN ALA GLU ILE ASN LYS ARG LEU ASP SEQRES 2 D 165 ALA TYR ALA LYS GLY THR VAL ASP SER PRO TYR ARG VAL SEQRES 3 D 165 LYS LYS ALA THR SER TYR ASP PRO SER PHE GLY VAL MET SEQRES 4 D 165 GLU ALA GLY ALA ILE ASP ALA ASP GLY TYR TYR HIS ALA SEQRES 5 D 165 GLN CYS GLN ASP LEU ILE THR ASP TYR VAL LEU TRP LEU SEQRES 6 D 165 THR ASP ASN LYS VAL ARG THR TRP GLY ASN ALA LYS ASP SEQRES 7 D 165 GLN ILE LYS GLN SER TYR GLY THR GLY PHE LYS ILE HIS SEQRES 8 D 165 GLU ASN LYS PRO SER THR VAL PRO LYS LYS GLY TRP ILE SEQRES 9 D 165 ALA VAL PHE THR SER GLY SER TYR GLU GLN TRP GLY HIS SEQRES 10 D 165 ILE GLY ILE VAL TYR ASP GLY GLY ASN THR SER THR PHE SEQRES 11 D 165 THR ILE LEU GLU GLN ASN TRP ASN GLY TYR ALA ASN LYS SEQRES 12 D 165 LYS PRO THR LYS ARG VAL ASP ASN TYR TYR GLY LEU THR SEQRES 13 D 165 HIS PHE ILE GLU ILE PRO VAL LYS ALA
HET CMH A1166 8 HET CL A1167 1 HET GOL A1168 6 HET EPE A1169 15 HET CA A1170 1 HET MMC A1171 2 HET MMC A1172 2 HET HG A1173 1 HET HG A1174 1 HET CMH B1166 8 HET CL B1167 1 HET EPE B1168 15 HET CA B1169 1 HET MMC B1170 2 HET MMC B1171 2 HET HG B1172 1 HET HG B1173 1 HET CMH C1166 8 HET EPE C1167 15 HET CA C1168 1 HET MMC C1169 4 HET MMC C1170 2 HET HG C1171 1 HET CMH D1166 8 HET GOL D1167 6 HET EPE D1168 15 HET CA D1169 1 HET MMC D1170 4 HET MMC D1171 2 HET HG D1172 1
HETNAM CMH S-(METHYLMERCURY)-L-CYSTEINE HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE HETNAM 2 EPE ETHANESULFONIC ACID HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETNAM HG MERCURY (II) ION HETNAM MMC METHYL MERCURY ION
HETSYN EPE HEPES HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 5 CMH 4(C4 H9 HG N O2 S) FORMUL 6 CL 2(CL 1-) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 8 EPE 4(C8 H18 N2 O4 S) FORMUL 9 CA 4(CA 2+) FORMUL 10 MMC 8(C H3 HG 1+) FORMUL 12 HG 6(HG 2+) FORMUL 13 HOH *770(H2 O)
HELIX 1 1 GLN A 5 GLY A 18 1 14 HELIX 2 2 GLN A 55 THR A 66 1 12 HELIX 3 3 ASN A 75 GLN A 82 5 8 HELIX 4 4 SER A 109 GLU A 113 5 5 HELIX 5 5 GLN B 5 GLY B 18 1 14 HELIX 6 6 GLN B 55 THR B 66 1 12 HELIX 7 7 ASN B 75 GLN B 82 5 8 HELIX 8 8 SER B 109 GLU B 113 5 5 HELIX 9 9 GLN C 5 LYS C 17 1 13 HELIX 10 10 GLN C 55 THR C 66 1 12 HELIX 11 11 ASN C 75 GLN C 82 5 8 HELIX 12 12 SER C 109 GLU C 113 5 5 HELIX 13 13 GLN D 5 LYS D 17 1 13 HELIX 14 14 GLN D 55 THR D 66 1 12 HELIX 15 15 ASN D 75 GLN D 82 5 8 HELIX 16 16 SER D 109 GLU D 113 5 5
SHEET 1 AA 2 LYS A 3 THR A 4 0 SHEET 2 AA 2 VAL A 163 LYS A 164 1 N LYS A 164 O LYS A 3 SHEET 1 AB 6 LYS A 89 GLU A 92 0 SHEET 2 AB 6 LEU A 155 GLU A 160 -1 O PHE A 158 N HIS A 91 SHEET 3 AB 6 ILE A 104 PHE A 107 -1 O ILE A 104 N ILE A 159 SHEET 4 AB 6 HIS A 117 ASP A 123 -1 O HIS A 117 N PHE A 107 SHEET 5 AB 6 PHE A 130 GLU A 134 -1 O THR A 131 N TYR A 122 SHEET 6 AB 6 THR A 146 ASP A 150 -1 O THR A 146 N GLU A 134 SHEET 1 BA 2 LYS B 3 THR B 4 0 SHEET 2 BA 2 VAL B 163 LYS B 164 1 N LYS B 164 O LYS B 3 SHEET 1 BB 6 LYS B 89 GLU B 92 0 SHEET 2 BB 6 LEU B 155 GLU B 160 -1 O PHE B 158 N HIS B 91 SHEET 3 BB 6 ILE B 104 PHE B 107 -1 O ILE B 104 N ILE B 159 SHEET 4 BB 6 HIS B 117 ASP B 123 -1 O HIS B 117 N PHE B 107 SHEET 5 BB 6 PHE B 130 GLU B 134 -1 O THR B 131 N TYR B 122 SHEET 6 BB 6 THR B 146 ASP B 150 -1 O THR B 146 N GLU B 134 SHEET 1 CA 2 LYS C 3 THR C 4 0 SHEET 2 CA 2 VAL C 163 LYS C 164 1 N LYS C 164 O LYS C 3 SHEET 1 CB 6 LYS C 89 GLU C 92 0 SHEET 2 CB 6 LEU C 155 GLU C 160 -1 O PHE C 158 N HIS C 91 SHEET 3 CB 6 ILE C 104 PHE C 107 -1 O ILE C 104 N ILE C 159 SHEET 4 CB 6 HIS C 117 ASP C 123 -1 O HIS C 117 N PHE C 107 SHEET 5 CB 6 PHE C 130 GLU C 134 -1 O THR C 131 N TYR C 122 SHEET 6 CB 6 THR C 146 ASP C 150 -1 O THR C 146 N GLU C 134 SHEET 1 DA 2 LYS D 3 THR D 4 0 SHEET 2 DA 2 VAL D 163 LYS D 164 1 N LYS D 164 O LYS D 3 SHEET 1 DB 6 LYS D 89 GLU D 92 0 SHEET 2 DB 6 LEU D 155 GLU D 160 -1 O PHE D 158 N HIS D 91 SHEET 3 DB 6 ILE D 104 PHE D 107 -1 O ILE D 104 N ILE D 159 SHEET 4 DB 6 HIS D 117 ASP D 123 -1 O HIS D 117 N PHE D 107 SHEET 5 DB 6 PHE D 130 GLU D 134 -1 O THR D 131 N TYR D 122 SHEET 6 DB 6 THR D 146 ASP D 150 -1 O THR D 146 N GLU D 134
LINK C GLN A 53 N CMH A1166 1555 1555 1.33 LINK N GLN A 55 C CMH A1166 1555 1555 1.33 LINK HG CMH A1166 CL CL A1167 1555 1555 2.05 LINK HG CMH A1166 O HOH A2094 1555 1555 2.94 LINK CA CA A1170 OD1 ASP A 45 1555 1555 2.25 LINK CA CA A1170 OD1 ASP A 47 1555 1555 2.40 LINK CA CA A1170 O TYR A 49 1555 1555 2.41 LINK CA CA A1170 O HIS A 51 1555 1555 2.28 LINK CA CA A1170 OD1 ASP A 56 1555 1555 2.70 LINK CA CA A1170 OD2 ASP A 56 1555 1555 2.38 LINK CA CA A1170 O HOH A2083 1555 1555 2.40 LINK HG MMC A1171 OD1 ASP A 67 1555 1555 2.95 LINK HG MMC A1171 O TRP A 64 1555 1555 2.78 LINK HG MMC A1172 O HOH A2143 1555 1555 2.97 LINK HG HG A1173 O ALA A 2 1555 1555 2.83 LINK C GLN B 53 N CMH B1166 1555 1555 1.33 LINK N GLN B 55 C CMH B1166 1555 1555 1.33 LINK HG CMH B1166 O HOH B2097 1555 1555 2.90 LINK CA CA B1169 OD1 ASP B 45 1555 1555 2.26 LINK CA CA B1169 O TYR B 49 1555 1555 2.41 LINK CA CA B1169 O HIS B 51 1555 1555 2.32 LINK CA CA B1169 OD1 ASP B 47 1555 1555 2.36 LINK CA CA B1169 OD1 ASP B 56 1555 1555 2.68 LINK CA CA B1169 OD2 ASP B 56 1555 1555 2.40 LINK CA CA B1169 O HOH B2088 1555 1555 2.39 LINK HG MMC B1170 ND1 HIS B 91 1555 1555 2.69 LINK HG MMC B1171 O TRP B 64 1555 1555 2.95 LINK HG MMC B1171 OD1 ASP B 67 1555 1555 3.14 LINK HG HG B1172 O ALA B 2 1555 1555 2.79 LINK C GLN C 53 N CMH C1166 1555 1555 1.32 LINK N GLN C 55 C CMH C1166 1555 1555 1.33 LINK HG CMH C1166 O HOH C2081 1555 1555 3.09 LINK CA CA C1168 OD2 ASP C 56 1555 1555 2.46 LINK CA CA C1168 OD1 ASP C 45 1555 1555 2.30 LINK CA CA C1168 OD1 ASP C 47 1555 1555 2.37 LINK CA CA C1168 O TYR C 49 1555 1555 2.34 LINK CA CA C1168 O HIS C 51 1555 1555 2.29 LINK CA CA C1168 OD1 ASP C 56 1555 1555 2.73 LINK CA CA C1168 O HOH C2073 1555 1555 2.39 LINK HG MMC C1170 O TRP C 64 1555 1555 2.70 LINK HG MMC C1170 OD1 ASP C 67 1555 1555 3.08 LINK HG HG C1171 O HOH C2156 1555 1555 3.08 LINK HG HG C1171 ND1 HIS C 117 1555 1555 2.41 LINK C GLN D 53 N CMH D1166 1555 1555 1.32 LINK N GLN D 55 C CMH D1166 1555 1555 1.33 LINK HG CMH D1166 O HOH D2077 1555 1555 3.03 LINK CA CA D1169 O HOH D2068 1555 1555 2.34 LINK CA CA D1169 OD2 ASP D 56 1555 1555 2.53 LINK CA CA D1169 O HIS D 51 1555 1555 2.31 LINK CA CA D1169 O TYR D 49 1555 1555 2.27 LINK CA CA D1169 OD1 ASP D 47 1555 1555 2.34 LINK CA CA D1169 OD1 ASP D 45 1555 1555 2.32 LINK CA CA D1169 OD1 ASP D 56 1555 1555 2.78 LINK HG MMC D1171 O TRP D 64 1555 1555 2.76 LINK HG MMC D1171 OD1 ASP D 67 1555 1555 3.01 LINK HG HG D1172 ND1 HIS D 117 1555 1555 2.08
SITE 1 AC1 12 GLN A 53 GLN A 55 ASP A 56 LEU A 57 SITE 2 AC1 12 GLY A 116 HIS A 117 ILE A 118 GLN A 135 SITE 3 AC1 12 CL A1167 EPE A1169 HOH A2094 HOH A2172 SITE 1 AC2 2 HIS A 117 CMH A1166 SITE 1 AC3 7 ARG A 11 SER A 22 PRO A 23 ASP A 60 SITE 2 AC3 7 TRP A 64 ASN A 68 MMC A1171 SITE 1 AC4 11 PHE A 36 TYR A 50 GLN A 53 GLN A 55 SITE 2 AC4 11 ASN A 75 ALA A 76 TRP A 115 CMH A1166 SITE 3 AC4 11 HOH A2097 HOH A2113 HOH A2114 SITE 1 AC5 6 ASP A 45 ASP A 47 TYR A 49 HIS A 51 SITE 2 AC5 6 ASP A 56 HOH A2083 SITE 1 AC6 5 LYS A 3 TRP A 64 ASP A 67 ASN A 68 SITE 2 AC6 5 GOL A1168 SITE 1 AC7 3 ILE A 90 HIS A 91 HOH A2143 SITE 1 AC8 1 ALA A 2 SITE 1 AC9 2 GLY A 110 SER A 111 SITE 1 BC1 12 GLN B 53 GLN B 55 ASP B 56 LEU B 57 SITE 2 BC1 12 GLY B 116 HIS B 117 ILE B 118 GLN B 135 SITE 3 BC1 12 CL B1167 EPE B1168 HOH B2097 HOH B2163 SITE 1 BC2 4 GLY B 116 HIS B 117 CMH B1166 HOH B2097 SITE 1 BC3 11 PHE B 36 TYR B 50 GLN B 53 GLN B 55 SITE 2 BC3 11 ASN B 75 ALA B 76 TRP B 115 CMH B1166 SITE 3 BC3 11 HOH B2073 HOH B2089 HOH B2115 SITE 1 BC4 6 ASP B 45 ASP B 47 TYR B 49 HIS B 51 SITE 2 BC4 6 ASP B 56 HOH B2088 SITE 1 BC5 2 ILE B 90 HIS B 91 SITE 1 BC6 4 LYS B 3 TRP B 64 ASP B 67 ASN B 68 SITE 1 BC7 1 ALA B 2 SITE 1 BC8 2 GLY B 110 SER B 111 SITE 1 BC9 11 GLN C 53 GLN C 55 ASP C 56 LEU C 57 SITE 2 BC9 11 GLY C 116 HIS C 117 ILE C 118 GLN C 135 SITE 3 BC9 11 EPE C1167 HOH C2081 HOH C2142 SITE 1 CC1 10 TYR C 50 GLN C 53 GLN C 55 ASN C 75 SITE 2 CC1 10 ALA C 76 TRP C 115 CMH C1166 HOH C2082 SITE 3 CC1 10 HOH C2085 HOH C2104 SITE 1 CC2 6 ASP C 45 ASP C 47 TYR C 49 HIS C 51 SITE 2 CC2 6 ASP C 56 HOH C2073 SITE 1 CC3 2 ILE C 90 HIS C 91 SITE 1 CC4 4 LYS C 3 TRP C 64 ASP C 67 HOH C2015 SITE 1 CC5 2 HIS C 117 HOH C2156 SITE 1 CC6 11 GLN D 53 GLN D 55 ASP D 56 LEU D 57 SITE 2 CC6 11 GLY D 116 HIS D 117 ILE D 118 GLN D 135 SITE 3 CC6 11 EPE D1168 HOH D2077 HOH D2132 SITE 1 CC7 5 LYS A 81 HOH A2120 ARG D 71 THR D 72 SITE 2 CC7 5 TRP D 73 SITE 1 CC8 10 TYR D 50 GLN D 53 GLN D 55 ASN D 75 SITE 2 CC8 10 ALA D 76 TRP D 115 CMH D1166 HOH D2096 SITE 3 CC8 10 HOH D2177 HOH D2178 SITE 1 CC9 6 ASP D 45 ASP D 47 TYR D 49 HIS D 51 SITE 2 CC9 6 ASP D 56 HOH D2068 SITE 1 DC1 3 ILE D 90 HIS D 91 HOH D2116 SITE 1 DC2 4 LYS D 3 TRP D 64 ASP D 67 ASN D 68 SITE 1 DC3 1 HIS D 117
CRYST1 39.020 61.520 72.800 91.80 98.73 90.01 P 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.025628 0.000004 0.003937 0.00000
SCALE2 0.000000 0.016255 0.000517 0.00000
SCALE3 0.000000 0.000000 0.013904 0.00000
MTRIX1 1 -0.999980 -0.000410 -0.005660 28.81070 1
MTRIX2 1 -0.000410 1.000000 -0.000990 30.82522 1
MTRIX3 1 0.005660 -0.000990 -0.999980 125.46037 1
MTRIX1 2 0.999590 -0.028710 0.000180 -16.85748 1
MTRIX2 2 -0.025860 -0.897720 0.439810 -13.40129 1
MTRIX3 2 -0.012470 -0.439630 -0.898090 129.27524 1
MTRIX1 3 -0.999560 0.029430 0.002750 6.12498 1
MTRIX2 3 -0.025200 -0.897060 0.441200 17.25254 1
MTRIX3 3 0.015450 0.440930 0.897410 -3.83987 1
MTRIX1 4 -0.999560 -0.029140 0.005610 12.14037 1
MTRIX2 4 0.023710 -0.897980 -0.439390 68.70654 1
MTRIX3 4 0.017840 -0.439070 0.898280 29.59155 1
MTRIX1 5 0.999520 0.029840 -0.008510 -22.52818 1
MTRIX2 5 0.023030 -0.897330 -0.440760 99.53175 1
MTRIX3 5 -0.020790 0.440350 -0.897590 95.80234 1
MTRIX1 6 -0.999990 0.000520 -0.003350 -10.30666 1
MTRIX2 6 0.000520 1.000000 -0.001610 30.87002 1
MTRIX3 6 0.003350 -0.001610 -0.999990 125.46338 1