10 20 30 40 50 60 70 80 4CEU - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 12-NOV-13 4CEU
TITLE 1.58 A RESOLUTION NATIVE SPOROSARCINA PASTEURII UREASE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: UREASE SUBUNIT GAMMA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UREA AMIDOHYDROLASE SUBUNIT GAMMA; COMPND 5 EC: 3.5.1.5; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: UREASE SUBUNIT ALPHA; COMPND 8 CHAIN: C; COMPND 9 SYNONYM: UREA AMIDOHYDROLASE SUBUNIT ALPHA; COMPND 10 EC: 3.5.1.5; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: UREASE SUBUNIT BETA; COMPND 13 CHAIN: B; COMPND 14 SYNONYM: UREA AMIDOHYDROLASE SUBUNIT BETA; COMPND 15 EC: 3.5.1.5
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPOROSARCINA PASTEURII; SOURCE 3 ORGANISM_TAXID: 1474; SOURCE 4 STRAIN: DSM33; SOURCE 5 OTHER_DETAILS: GERMAN COLLECTION OF MICROORGANISMS (DSM); SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: SPOROSARCINA PASTEURII; SOURCE 8 ORGANISM_TAXID: 1474; SOURCE 9 STRAIN: DSM33; SOURCE 10 OTHER_DETAILS: GERMAN COLLECTION OF MICROORGANISMS (DSM); SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: SPOROSARCINA PASTEURII; SOURCE 13 ORGANISM_TAXID: 1474; SOURCE 14 STRAIN: DSM33; SOURCE 15 OTHER_DETAILS: GERMAN COLLECTION OF MICROORGANISMS (DSM)
KEYWDS HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR S.BENINI,M.CIANCI,S.CIURLI
REVDAT 3 17-DEC-14 4CEU 1 REMARK REVDAT 2 03-DEC-14 4CEU 1 JRNL REVDAT 1 27-AUG-14 4CEU 0
JRNL AUTH S.BENINI,M.CIANCI,L.MAZZEI,S.CIURLI JRNL TITL FLUORIDE INHIBITION OF SPOROSARCINA PASTEURII UREASE: JRNL TITL 2 STRUCTURE AND THERMODYNAMICS. JRNL REF J.BIOL.INORG.CHEM. V. 19 1243 2014 JRNL REFN ISSN 0949-8257 JRNL PMID 25113581 JRNL DOI 10.1007/S00775-014-1182-X
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.BENINI,P.KOSIKOWSKA,M.CIANCI,L.MAZZEI,A.G.VARA,L.BERLICKI, REMARK 1 AUTH 2 S.CIURLI REMARK 1 TITL THE CRYSTAL STRUCTURE OF SPOROSARCINA PASTEURII UREASE IN A REMARK 1 TITL 2 COMPLEX WITH CITRATE PROVIDES NEW HINTS FOR INHIBITOR REMARK 1 TITL 3 DESIGN. REMARK 1 REF J.BIOL.INORG.CHEM. V. 18 391 2013 REMARK 1 REFN ISSN 0949-8257 REMARK 1 PMID 23412551 REMARK 1 DOI 10.1007/S00775-013-0983-7 REMARK 1 REFERENCE 2 REMARK 1 AUTH S.BENINI,W.R.RYPNIEWSKI,K.S.WILSON,S.MANGANI,S.CIURLI REMARK 1 TITL MOLECULAR DETAILS OF UREASE INHIBITION BY BORIC ACID: REMARK 1 TITL 2 INSIGHTS INTO THE CATALYTIC MECHANISM. REMARK 1 REF J.AM.CHEM.SOC. V. 126 3714 2004 REMARK 1 REFN ISSN 0002-7863 REMARK 1 PMID 15038715 REMARK 1 DOI 10.1021/JA049618P REMARK 1 REFERENCE 3 REMARK 1 AUTH S.BENINI,W.R.RYPNIEWSKI,K.S.WILSON,S.CIURLI,S.MANGANI REMARK 1 TITL STRUCTURE-BASED RATIONALIZATION OF UREASE INHIBITION BY REMARK 1 TITL 2 PHOSPHATE: NOVEL INSIGHTS INTO THE ENZYME MECHANISM. REMARK 1 REF J.BIOL.INORG.CHEM. V. 6 778 2001 REMARK 1 REFN ISSN 0949-8257 REMARK 1 PMID 11713685 REMARK 1 DOI 10.1007/S007750100254 REMARK 1 REFERENCE 4 REMARK 1 AUTH S.BENINI,W.R.RYPNIEWSKI,K.S.WILSON,S.MILETTI,S.CIURLI, REMARK 1 AUTH 2 S.MANGANI REMARK 1 TITL THE COMPLEX OF BACILLUS PASTEURII UREASE WITH REMARK 1 TITL 2 ACETOHYDROXAMATE ANION FROM X-RAY DATA AT 1.55 A REMARK 1 TITL 3 RESOLUTION. REMARK 1 REF J.BIOL.INORG.CHEM. V. 5 110 2000 REMARK 1 REFN ISSN 0949-8257 REMARK 1 PMID 10766443 REMARK 1 DOI 10.1007/S007750050014 REMARK 1 REFERENCE 5 REMARK 1 AUTH S.BENINI,W.R.RYPNIEWSKI,K.S.WILSON,S.MILETTI,S.CIURLI, REMARK 1 AUTH 2 S.MANGANI REMARK 1 TITL A NEW PROPOSAL FOR UREASE MECHANISM BASED ON THE CRYSTAL REMARK 1 TITL 2 STRUCTURES OF THE NATIVE AND INHIBITED ENZYME FROM BACILLUS REMARK 1 TITL 3 PASTEURII: WHY UREA HYDROLYSIS COSTS TWO NICKELS. REMARK 1 REF STRUCTURE V. 7 205 1999 REMARK 1 REFN ISSN 0969-2126 REMARK 1 PMID 10368287 REMARK 1 DOI 10.1016/S0969-2126(99)80026-4 REMARK 1 REFERENCE 6 REMARK 1 AUTH S.BENINI,S.CIURLI,W.R.RYPNIEWSKI,K.S.WILSON,S.MANGANI REMARK 1 TITL THE COMPLEX OF BACILLUS PASTEURII UREASE WITH REMARK 1 TITL 2 BETA-MERCAPTOETHANOL FROM X-RAY DATA AT 1.65 A RESOLUTION REMARK 1 REF J.BIOL.INORG.CHEM. V. 3 268 1998 REMARK 1 REFN ISSN 0949-8257 REMARK 1 DOI 10.1007/S007750050231 REMARK 1 REFERENCE 7 REMARK 1 AUTH S.BENINI,S.CIURLI,W.R.RYPNIEWSKI,K.S.WILSON,S.MANGANI REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY HIGH-RESOLUTION X-RAY REMARK 1 TITL 2 DIFFRACTION ANALYSIS OF NATIVE AND BETA-MERCAPTOETHANOL- REMARK 1 TITL 3 INHIBITED UREASE FROM BACILLUS PASTEURII. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 54 409 1998 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 9761912 REMARK 1 DOI 10.1107/S0907444997013085
REMARK 2 REMARK 2 RESOLUTION. 1.58 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU, REMARK 3 STEINER,NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 97.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 99.81 REMARK 3 NUMBER OF REFLECTIONS : 123815 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.13614 REMARK 3 R VALUE (WORKING SET) : 0.13515 REMARK 3 FREE R VALUE : 0.15495 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 6566 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.580 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.621 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8854 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.183 REMARK 3 BIN FREE R VALUE SET COUNT : 515 REMARK 3 BIN FREE R VALUE : 0.203 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6071 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 100 REMARK 3 SOLVENT ATOMS : 859 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.176 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.41 REMARK 3 B22 (A**2) : 0.41 REMARK 3 B33 (A**2) : -1.34 REMARK 3 B12 (A**2) : 0.41 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.059 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.059 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.037 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.035 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.970 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6266 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6038 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8478 ; 1.597 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13926 ; 0.826 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 810 ; 6.313 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 272 ;34.950 ;24.743 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1076 ;11.841 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;17.056 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 960 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7096 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1322 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS.
REMARK 4 REMARK 4 4CEU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-NOV-13. REMARK 100 THE PDBE ID CODE IS EBI-58947.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.968 REMARK 200 MONOCHROMATOR : SI(III) CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 130522 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.58 REMARK 200 RESOLUTION RANGE LOW (A) : 97.51 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.8 REMARK 200 R MERGE (I) : 0.09 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.00 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.8 REMARK 200 R MERGE FOR SHELL (I) : 0.52 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.50 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: PDB ENTRY 4AC7 REMARK 200 REMARK 200 REMARK: NONE
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M AMMONIUM SULFATE, 100 MM REMARK 280 CITRATE, PH 6.3, 50 MM NA2SO3
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 94.42000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 94.42000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 94.42000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 94.42000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 94.42000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 94.42000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: NONAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: NONAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 56970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -384.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 -65.56200 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 113.55672 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 65.56200 REMARK 350 BIOMT2 3 0.866025 -0.500000 0.000000 113.55672 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2025 LIES ON A SPECIAL POSITION. REMARK 375 HOH C2102 LIES ON A SPECIAL POSITION.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASN B 3 REMARK 465 ASN B 4
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 20 CG CD1 CD2 REMARK 470 ASN B 5 ND2 REMARK 470 LYS B 110 CG CD CE NZ REMARK 470 GLU B 111 CD OE1 OE2 REMARK 470 VAL C 42 CG1 CG2 REMARK 470 LYS C 326 CD CE NZ REMARK 470 LYS C 395 CG CD CE NZ REMARK 470 ASN C 396 CG OD1 ND2 REMARK 470 LEU C 403 CG CD1 CD2 REMARK 470 GLU C 551 CG CD OE1 OE2 REMARK 470 LYS C 559 NZ
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2A GLU C 64 O HOH C 2113 2.02 REMARK 500 N ALA C 370 O HOH C 2364 2.15 REMARK 500 O HOH A 2081 O HOH A 2119 2.15 REMARK 500 O HOH C 2111 O HOH C 2227 2.20 REMARK 500 O HOH C 2278 O HOH C 2442 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O1 EDO C 1575 O HOH C 2447 12565 2.04 REMARK 500 S SO4 C 1581 O4 SO4 C 1581 2665 2.02 REMARK 500 S SO4 C 1581 S SO4 C 1581 2665 0.70 REMARK 500 S SO4 C 1581 O1 SO4 C 1581 3565 1.48 REMARK 500 S SO4 C 1581 O2 SO4 C 1581 2665 1.70 REMARK 500 S SO4 C 1581 O3 SO4 C 1581 2665 1.75 REMARK 500 O1 SO4 C 1581 O1 SO4 C 1581 3565 2.03 REMARK 500 O1 SO4 C 1581 O2 SO4 C 1581 3565 1.97 REMARK 500 O1 SO4 C 1581 O3 SO4 C 1581 2665 0.60 REMARK 500 O1 SO4 C 1581 O4 SO4 C 1581 3565 0.64 REMARK 500 O2 SO4 C 1581 O2 SO4 C 1581 2665 1.05 REMARK 500 O2 SO4 C 1581 O3 SO4 C 1581 3565 2.00 REMARK 500 O3 SO4 C 1581 O4 SO4 C 1581 2665 0.67 REMARK 500 O HOH C 2364 O HOH C 2423 3565 1.72 REMARK 500 O HOH C 2450 O HOH C 2450 10665 1.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CXM A 1 C HIS A 2 N 0.207 REMARK 500 KCX C 220 C ILE C 221 N 0.174 REMARK 500 CYS C 520 CB CYS C 520 SG -0.156 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 5 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG C 5 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 PHE C 274 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 CYS C 322 CA - CB - SG ANGL. DEV. = -7.5 DEGREES REMARK 500 ARG C 388 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 CYS C 520 CB - CA - C ANGL. DEV. = -12.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 52 126.40 -27.67 REMARK 500 ILE B 99 -101.84 61.31 REMARK 500 THR C 15 -169.78 -128.81 REMARK 500 ALA C 23 -134.32 47.82 REMARK 500 MET C 54 -118.05 -117.37 REMARK 500 HIS C 275 63.45 26.57 REMARK 500 HIS C 283 112.69 -27.82 REMARK 500 ASP C 363 34.71 70.46 REMARK 500 LEU C 365 -0.17 70.01 REMARK 500 MET C 367 54.00 -163.46 REMARK 500 ASN C 396 -143.24 57.64 REMARK 500 THR C 411 -85.32 -121.62 REMARK 500 VAL C 445 -63.71 -107.62 REMARK 500 ASN C 531 55.59 -148.78 REMARK 500 ALA C 564 -109.78 -138.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASN C 302 23.0 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI C 600 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX C 220 OQ1 REMARK 620 2 HIS C 249 ND1 100.4 REMARK 620 3 HIS C 275 NE2 107.2 98.6 REMARK 620 4 OH C1571 O 96.6 154.2 94.6 REMARK 620 5 HOH C2221 O 108.2 89.3 141.6 67.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI C 601 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX C 220 OQ2 REMARK 620 2 HIS C 137 NE2 90.8 REMARK 620 3 HIS C 139 NE2 91.7 108.5 REMARK 620 4 ASP C 363 OD1 172.4 82.8 86.4 REMARK 620 5 HOH C2196 O 92.9 162.6 88.4 94.5 REMARK 620 6 OH C1571 O 95.6 95.0 155.3 89.1 67.7 REMARK 620 N 1 2 3 4 5
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI C 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI C 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OH C1571 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C1572 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C1573 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C1574 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B1127 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C1575 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C1576 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C1577 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C1578 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C1579 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1128 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C1580 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C1581 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C1582 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1104
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CEX RELATED DB: PDB REMARK 900 1.58 A RESOLUTION FLUORIDE INHIBITED SPOROSARCINA REMARK 900 PASTEURII UREASE
DBREF 4CEU A 1 100 UNP P41022 URE3_BACPA 1 100 DBREF 4CEU B 1 126 UNP P41021 URE2_BACPA 1 126 DBREF 4CEU C 1 570 UNP P41020 URE1_BACPA 1 569
SEQADV 4CEU GLU C 19 UNP P41020 ARG 19 CONFLICT SEQADV 4CEU TRP C 28 UNP P41020 GLY 28 CONFLICT SEQADV 4CEU ILE C 29 UNP P41020 INSERTION SEQADV 4CEU THR C 36 UNP P41020 TYR 35 CONFLICT SEQADV 4CEU THR C 37 UNP P41020 TYR 36 CONFLICT SEQADV 4CEU TYR C 38 UNP P41020 LEU 37 CONFLICT SEQADV 4CEU LEU C 263 UNP P41020 VAL 262 CONFLICT SEQADV 4CEU ILE C 420 UNP P41020 MET 419 CONFLICT
SEQRES 1 A 100 CXM HIS LEU ASN PRO ALA GLU LYS GLU LYS LEU GLN ILE SEQRES 2 A 100 PHE LEU ALA SER GLU LEU LEU LEU ARG ARG LYS ALA ARG SEQRES 3 A 100 GLY LEU LYS LEU ASN TYR PRO GLU ALA VAL ALA ILE ILE SEQRES 4 A 100 THR SER PHE ILE MET GLU GLY ALA ARG ASP GLY LYS THR SEQRES 5 A 100 VAL ALA MET LEU MET GLU GLU GLY LYS HIS VAL LEU THR SEQRES 6 A 100 ARG ASP ASP VAL MET GLU GLY VAL PRO GLU MET ILE ASP SEQRES 7 A 100 ASP ILE GLN ALA GLU ALA THR PHE PRO ASP GLY THR LYS SEQRES 8 A 100 LEU VAL THR VAL HIS ASN PRO ILE SER SEQRES 1 B 126 MET SER ASN ASN ASN TYR ILE VAL PRO GLY GLU TYR ARG SEQRES 2 B 126 VAL ALA GLU GLY GLU ILE GLU ILE ASN ALA GLY ARG GLU SEQRES 3 B 126 LYS THR THR ILE ARG VAL SER ASN THR GLY ASP ARG PRO SEQRES 4 B 126 ILE GLN VAL GLY SER HIS ILE HIS PHE VAL GLU VAL ASN SEQRES 5 B 126 LYS GLU LEU LEU PHE ASP ARG ALA GLU GLY ILE GLY ARG SEQRES 6 B 126 ARG LEU ASN ILE PRO SER GLY THR ALA ALA ARG PHE GLU SEQRES 7 B 126 PRO GLY GLU GLU MET GLU VAL GLU LEU THR GLU LEU GLY SEQRES 8 B 126 GLY ASN ARG GLU VAL PHE GLY ILE SER ASP LEU THR ASN SEQRES 9 B 126 GLY SER VAL ASP ASN LYS GLU LEU ILE LEU GLN ARG ALA SEQRES 10 B 126 LYS GLU LEU GLY TYR LYS GLY VAL GLU SEQRES 1 C 570 MET LYS ILE ASN ARG GLN GLN TYR ALA GLU SER TYR GLY SEQRES 2 C 570 PRO THR VAL GLY ASP GLU VAL ARG LEU ALA ASP THR ASP SEQRES 3 C 570 LEU TRP ILE GLU VAL GLU LYS ASP TYR THR THR TYR GLY SEQRES 4 C 570 ASP GLU VAL ASN PHE GLY GLY GLY LYS VAL LEU ARG GLU SEQRES 5 C 570 GLY MET GLY GLU ASN GLY THR TYR THR ARG THR GLU ASN SEQRES 6 C 570 VAL LEU ASP LEU LEU LEU THR ASN ALA LEU ILE LEU ASP SEQRES 7 C 570 TYR THR GLY ILE TYR LYS ALA ASP ILE GLY VAL LYS ASP SEQRES 8 C 570 GLY TYR ILE VAL GLY ILE GLY LYS GLY GLY ASN PRO ASP SEQRES 9 C 570 ILE MET ASP GLY VAL THR PRO ASN MET ILE VAL GLY THR SEQRES 10 C 570 ALA THR GLU VAL ILE ALA ALA GLU GLY LYS ILE VAL THR SEQRES 11 C 570 ALA GLY GLY ILE ASP THR HIS VAL HIS PHE ILE ASN PRO SEQRES 12 C 570 ASP GLN VAL ASP VAL ALA LEU ALA ASN GLY ILE THR THR SEQRES 13 C 570 LEU PHE GLY GLY GLY THR GLY PRO ALA GLU GLY SER LYS SEQRES 14 C 570 ALA THR THR VAL THR PRO GLY PRO TRP ASN ILE GLU LYS SEQRES 15 C 570 MET LEU LYS SER THR GLU GLY LEU PRO ILE ASN VAL GLY SEQRES 16 C 570 ILE LEU GLY LYS GLY HIS GLY SER SER ILE ALA PRO ILE SEQRES 17 C 570 MET GLU GLN ILE ASP ALA GLY ALA ALA GLY LEU KCX ILE SEQRES 18 C 570 HIS GLU ASP TRP GLY ALA THR PRO ALA SER ILE ASP ARG SEQRES 19 C 570 SER LEU THR VAL ALA ASP GLU ALA ASP VAL GLN VAL ALA SEQRES 20 C 570 ILE HIS SER ASP THR LEU ASN GLU ALA GLY PHE LEU GLU SEQRES 21 C 570 ASP THR LEU ARG ALA ILE ASN GLY ARG VAL ILE HIS SER SEQRES 22 C 570 PHE HIS VAL GLU GLY ALA GLY GLY GLY HIS ALA PRO ASP SEQRES 23 C 570 ILE MET ALA MET ALA GLY HIS PRO ASN VAL LEU PRO SER SEQRES 24 C 570 SER THR ASN PRO THR ARG PRO PHE THR VAL ASN THR ILE SEQRES 25 C 570 ASP GLU HIS LEU ASP MET LEU MET VAL CYS HIS HIS LEU SEQRES 26 C 570 LYS GLN ASN ILE PRO GLU ASP VAL ALA PHE ALA ASP SER SEQRES 27 C 570 ARG ILE ARG PRO GLU THR ILE ALA ALA GLU ASP ILE LEU SEQRES 28 C 570 HIS ASP LEU GLY ILE ILE SER MET MET SER THR ASP ALA SEQRES 29 C 570 LEU ALA MET GLY ARG ALA GLY GLU MET VAL LEU ARG THR SEQRES 30 C 570 TRP GLN THR ALA ASP LYS MET LYS LYS GLN ARG GLY PRO SEQRES 31 C 570 LEU ALA GLU GLU LYS ASN GLY SER ASP ASN PHE ARG LEU SEQRES 32 C 570 LYS ARG TYR VAL SER LYS TYR THR ILE ASN PRO ALA ILE SEQRES 33 C 570 ALA GLN GLY ILE ALA HIS GLU VAL GLY SER ILE GLU GLU SEQRES 34 C 570 GLY LYS PHE ALA ASP LEU VAL LEU TRP GLU PRO LYS PHE SEQRES 35 C 570 PHE GLY VAL LYS ALA ASP ARG VAL ILE LYS GLY GLY ILE SEQRES 36 C 570 ILE ALA TYR ALA GLN ILE GLY ASP PRO SER ALA SER ILE SEQRES 37 C 570 PRO THR PRO GLN PRO VAL MET GLY ARG ARG MET TYR GLY SEQRES 38 C 570 THR VAL GLY ASP LEU ILE HIS ASP THR ASN ILE THR PHE SEQRES 39 C 570 MET SER LYS SER SER ILE GLN GLN GLY VAL PRO ALA LYS SEQRES 40 C 570 LEU GLY LEU LYS ARG ARG ILE GLY THR VAL LYS ASN CYS SEQRES 41 C 570 ARG ASN ILE GLY LYS LYS ASP MET LYS TRP ASN ASP VAL SEQRES 42 C 570 THR THR ASP ILE ASP ILE ASN PRO GLU THR TYR GLU VAL SEQRES 43 C 570 LYS VAL ASP GLY GLU VAL LEU THR CYS GLU PRO VAL LYS SEQRES 44 C 570 GLU LEU PRO MET ALA GLN ARG TYR PHE LEU PHE
MODRES 4CEU CXM A 1 MET N-CARBOXYMETHIONINE MODRES 4CEU KCX C 220 LYS LYSINE NZ-CARBOXYLIC ACID
HET CXM A 1 11 HET KCX C 220 12 HET NI C 600 1 HET NI C 601 1 HET OH C1571 1 HET EDO C1572 4 HET EDO A1101 4 HET EDO C1573 4 HET EDO C1574 4 HET EDO B1127 4 HET EDO C1575 4 HET EDO C1576 4 HET EDO A1102 4 HET EDO C1577 4 HET EDO A1103 4 HET EDO C1578 4 HET SO4 C1579 5 HET SO4 B1128 5 HET SO4 C1580 5 HET SO4 C1581 5 HET SO4 C1582 5 HET SO4 A1104 5
HETNAM EDO 1,2-ETHANEDIOL HETNAM OH HYDROXIDE ION HETNAM SO4 SULFATE ION HETNAM CXM N-CARBOXYMETHIONINE HETNAM NI NICKEL (II) ION HETNAM KCX LYSINE NZ-CARBOXYLIC ACID
HETSYN EDO ETHYLENE GLYCOL
FORMUL 4 EDO 11(C2 H6 O2) FORMUL 5 OH H O 1- FORMUL 6 SO4 6(O4 S 2-) FORMUL 7 CXM C6 H11 N O4 S FORMUL 8 NI 2(NI 2+) FORMUL 9 KCX C7 H14 N2 O4 FORMUL 10 HOH *859(H2 O)
HELIX 1 1 ASN A 4 ARG A 26 1 23 HELIX 2 2 ASN A 31 ASP A 49 1 19 HELIX 3 3 THR A 52 GLY A 60 1 9 HELIX 4 4 LYS A 61 VAL A 63 5 3 HELIX 5 5 THR A 65 ASP A 68 5 4 HELIX 6 6 GLY A 72 ILE A 77 1 6 HELIX 7 7 HIS B 47 VAL B 51 5 5 HELIX 8 8 ASP B 58 ILE B 63 5 6 HELIX 9 9 ASN B 109 GLY B 121 1 13 HELIX 10 10 ARG C 5 GLY C 13 1 9 HELIX 11 11 ASP C 144 ASN C 152 1 9 HELIX 12 12 ALA C 165 THR C 171 1 7 HELIX 13 13 PRO C 175 GLU C 188 1 14 HELIX 14 14 SER C 204 GLY C 215 1 12 HELIX 15 15 ASP C 224 GLY C 226 5 3 HELIX 16 16 THR C 228 ASP C 243 1 16 HELIX 17 17 PHE C 258 ASN C 267 1 10 HELIX 18 18 ASP C 286 HIS C 293 5 8 HELIX 19 19 ASN C 310 HIS C 323 1 14 HELIX 20 20 ILE C 329 ILE C 340 1 12 HELIX 21 21 ARG C 341 LEU C 354 1 14 HELIX 22 22 GLU C 372 GLY C 389 1 18 HELIX 23 23 ASP C 399 THR C 411 1 13 HELIX 24 24 THR C 411 GLN C 418 1 8 HELIX 25 25 GLU C 439 PHE C 443 5 5 HELIX 26 26 TYR C 480 GLY C 484 5 5 HELIX 27 27 ASP C 485 THR C 490 1 6 HELIX 28 28 SER C 496 GLN C 502 1 7 HELIX 29 29 GLY C 503 GLY C 509 1 7 HELIX 30 30 GLY C 524 MET C 528 5 5
SHEET 1 AA 2 ASP A 79 PHE A 86 0 SHEET 2 AA 2 GLY A 89 HIS A 96 -1 O GLY A 89 N PHE A 86 SHEET 1 BA 3 TYR B 12 ARG B 13 0 SHEET 2 BA 3 GLU C 19 ARG C 21 -1 O GLU C 19 N ARG B 13 SHEET 3 BA 3 TRP C 28 GLU C 30 -1 O ILE C 29 N VAL C 20 SHEET 1 BB 2 GLU B 18 GLU B 20 0 SHEET 2 BB 2 LYS C 2 ASN C 4 -1 O ILE C 3 N ILE B 19 SHEET 1 BC 4 LEU B 55 LEU B 56 0 SHEET 2 BC 4 LYS B 27 ASN B 34 -1 O SER B 33 N LEU B 56 SHEET 3 BC 4 GLU B 82 GLU B 89 -1 O MET B 83 N VAL B 32 SHEET 4 BC 4 ARG B 65 LEU B 67 -1 O ARG B 66 N THR B 88 SHEET 1 BD 2 ILE B 40 GLY B 43 0 SHEET 2 BD 2 ALA B 74 PHE B 77 -1 O ALA B 75 N VAL B 42 SHEET 1 BE 2 GLU B 95 VAL B 96 0 SHEET 2 BE 2 GLY B 105 SER B 106 -1 O GLY B 105 N VAL B 96 SHEET 1 CA 8 TYR C 93 GLY C 98 0 SHEET 2 CA 8 GLY C 81 LYS C 90 -1 O ASP C 86 N GLY C 98 SHEET 3 CA 8 LEU C 69 ASP C 78 -1 O LEU C 69 N VAL C 89 SHEET 4 CA 8 ILE C 128 ALA C 131 1 O VAL C 129 N LEU C 77 SHEET 5 CA 8 LEU C 435 TRP C 438 -1 O VAL C 436 N THR C 130 SHEET 6 CA 8 ARG C 449 LYS C 452 -1 O ARG C 449 N LEU C 437 SHEET 7 CA 8 ILE C 455 ILE C 461 -1 O ILE C 455 N LYS C 452 SHEET 8 CA 8 MET C 475 ARG C 478 -1 O MET C 475 N ILE C 461 SHEET 1 CB 4 TYR C 93 GLY C 98 0 SHEET 2 CB 4 GLY C 81 LYS C 90 -1 O ASP C 86 N GLY C 98 SHEET 3 CB 4 LEU C 69 ASP C 78 -1 O LEU C 69 N VAL C 89 SHEET 4 CB 4 GLU C 120 ALA C 123 1 O GLU C 120 N LEU C 70 SHEET 1 CC 7 GLY C 133 HIS C 139 0 SHEET 2 CC 7 ILE C 154 GLY C 160 1 N THR C 155 O GLY C 133 SHEET 3 CC 7 ASN C 193 LYS C 199 1 O ASN C 193 N LEU C 157 SHEET 4 CC 7 GLY C 218 HIS C 222 1 O GLY C 218 N GLY C 198 SHEET 5 CC 7 GLN C 245 HIS C 249 1 O GLN C 245 N LEU C 219 SHEET 6 CC 7 ILE C 271 SER C 273 1 O HIS C 272 N ILE C 248 SHEET 7 CC 7 VAL C 296 PRO C 298 1 O LEU C 297 N SER C 273 SHEET 1 CD 5 GLY C 133 HIS C 139 0 SHEET 2 CD 5 ILE C 154 GLY C 160 1 N THR C 155 O GLY C 133 SHEET 3 CD 5 ASN C 193 LYS C 199 1 O ASN C 193 N LEU C 157 SHEET 4 CD 5 ILE C 492 MET C 495 -1 O ILE C 492 N VAL C 194 SHEET 5 CD 5 ARG C 513 THR C 516 1 O ARG C 513 N THR C 493 SHEET 1 CE 3 ILE C 537 ILE C 539 0 SHEET 2 CE 3 VAL C 546 VAL C 548 -1 O LYS C 547 N ASP C 538 SHEET 3 CE 3 GLU C 551 VAL C 552 -1 O GLU C 551 N VAL C 548
LINK C CXM A 1 N HIS A 2 1555 1555 1.53 LINK C LEU C 219 N KCX C 220 1555 1555 1.33 LINK C KCX C 220 N ILE C 221 1555 1555 1.50 LINK NI NI C 600 OQ1 KCX C 220 1555 1555 1.94 LINK NI NI C 600 ND1 HIS C 249 1555 1555 2.03 LINK NI NI C 600 NE2 HIS C 275 1555 1555 2.02 LINK NI NI C 600 O HOH C2221 1555 1555 2.23 LINK NI NI C 600 O OH C1571 1555 1555 2.07 LINK NI NI C 601 NE2 HIS C 139 1555 1555 2.08 LINK NI NI C 601 OD1 ASP C 363 1555 1555 2.10 LINK NI NI C 601 O HOH C2196 1555 1555 2.07 LINK NI NI C 601 NE2 HIS C 137 1555 1555 2.11 LINK NI NI C 601 OQ2 KCX C 220 1555 1555 2.08 LINK NI NI C 601 O OH C1571 1555 1555 2.12
CISPEP 1 ALA C 284 PRO C 285 0 3.15 CISPEP 2 ARG C 305 PRO C 306 0 -15.12 CISPEP 3 GLN C 472 PRO C 473 0 3.44
SITE 1 AC1 8 KCX C 220 HIS C 222 HIS C 249 HIS C 275 SITE 2 AC1 8 GLY C 280 NI C 601 OH C1571 HOH C2221 SITE 1 AC2 7 HIS C 137 HIS C 139 KCX C 220 ASP C 363 SITE 2 AC2 7 NI C 600 OH C1571 HOH C2196 SITE 1 AC3 9 HIS C 137 KCX C 220 HIS C 275 ASP C 363 SITE 2 AC3 9 NI C 600 NI C 601 HOH C2196 HOH C2221 SITE 3 AC3 9 HOH C2312 SITE 1 AC4 6 ASP C 34 THR C 36 TYR C 38 HOH C2062 SITE 2 AC4 6 HOH C2072 HOH C2523 SITE 1 AC5 9 GLY A 50 LYS A 51 THR A 52 PHE A 86 SITE 2 AC5 9 ASP A 88 HOH A2120 VAL C 309 ASN C 310 SITE 3 AC5 9 LYS C 559 SITE 1 AC6 7 ASP C 286 ALA C 289 ILE C 537 ASP C 538 SITE 2 AC6 7 ILE C 539 HOH C2294 HOH C2490 SITE 1 AC7 7 HOH B2112 GLY C 46 HIS C 323 LEU C 325 SITE 2 AC7 7 PHE C 335 HOH C2256 HOH C2526 SITE 1 AC8 6 ASP B 101 HOH B2170 HOH B2203 PRO C 229 SITE 2 AC8 6 HOH C2266 HOH C2302 SITE 1 AC9 6 TYR C 93 GLU C 423 ARG C 513 ILE C 514 SITE 2 AC9 6 HOH C2447 HOH C2527 SITE 1 BC1 6 TYR C 35 TYR C 83 ILE C 97 GLU C 429 SITE 2 BC1 6 HOH C2059 HOH C2528 SITE 1 BC2 6 GLY A 27 LYS A 29 ASP A 67 ASP A 68 SITE 2 BC2 6 HOH A2045 HOH A2058 SITE 1 BC3 5 ARG C 62 PRO C 177 TRP C 178 GLU C 181 SITE 2 BC3 5 HOH C2227 SITE 1 BC4 8 ASN A 4 ALA A 6 LYS A 10 HOH A2111 SITE 2 BC4 8 HOH A2122 PHE C 568 PHE C 570 HOH C2367 SITE 1 BC5 6 ASP C 536 ASP C 538 LYS C 547 VAL C 548 SITE 2 BC5 6 ASP C 549 GLY C 550 SITE 1 BC6 6 SER C 204 ILE C 205 HOH C2115 HOH C2238 SITE 2 BC6 6 HOH C2239 HOH C2243 SITE 1 BC7 2 ARG B 116 HOH B2191 SITE 1 BC8 6 VAL C 558 LYS C 559 GLU C 560 HOH C2511 SITE 2 BC8 6 HOH C2530 HOH C2531 SITE 1 BC9 2 LYS C 511 HOH C2532 SITE 1 CC1 11 HIS C 222 GLU C 223 ASP C 224 HIS C 249 SITE 2 CC1 11 GLY C 280 HIS C 323 ARG C 339 HOH C2221 SITE 3 CC1 11 HOH C2258 HOH C2261 HOH C2312 SITE 1 CC2 4 MET A 70 GLU A 71 HOH A2124 ARG C 566
CRYST1 131.124 131.124 188.840 90.00 90.00 120.00 P 63 2 2 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.007626 0.004403 0.000000 0.00000
SCALE2 0.000000 0.008806 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005295 0.00000