4ANC - Header Asymmetric Unit

HEADER TRANSFERASE 16-MAR-12 4ANC

TITLE CRYSTAL FORM I OF THE D93N MUTANT OF NUCLEOSIDE DIPHOSPHATE TITLE 2 KINASE FROM MYCOBACTERIUM TUBERCULOSIS

COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOSIDE DIPHOSPHATE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NDK, NDKA, NDP KINASE, NUCLEOSIDE-2-P KINASE; COMPND 5 EC: 2.7.4.6; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET24

KEYWDS TRANSFERASE

EXPDTA X-RAY DIFFRACTION

AUTHOR F.GEORGESCAULD,L.MOYNIE,J.HABERSETZER,I.LASCU,A.DAUTANT

REVDAT 2 03-APR-13 4ANC 1 JRNL REVDAT 1 13-MAR-13 4ANC 0

JRNL AUTH F.GEORGESCAULD,L.MOYNIE,J.HABERSETZER,L.CERVONI,I.MOCAN, JRNL AUTH 2 T.BORZA,P.HARRIS,A.DAUTANT,I.LASCU JRNL TITL INTERSUBUNIT IONIC INTERACTIONS STABILIZE THE NUCLEOSIDE JRNL TITL 2 DIPHOSPHATE KINASE OF MYCOBACTERIUM TUBERCULOSIS. JRNL REF PLOS ONE V. 8 57867 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23526954 JRNL DOI 10.1371/JOURNAL.PONE.0057867

REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.CHEN,S.MORERA,J.MOCAN,I.LASCU,J.JANIN REMARK 1 TITL X-RAY STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS NUCLEOSIDE REMARK 1 TITL 2 DIPHOSPHATE KINASE. REMARK 1 REF PROTEINS V. 47 556 2002 REMARK 1 REFN ISSN 0887-3585 REMARK 1 PMID 12001234 REMARK 1 DOI 10.1002/PROT.10113

REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.800 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.844 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.43 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.88 REMARK 3 NUMBER OF REFLECTIONS : 6100 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.2144 REMARK 3 R VALUE (WORKING SET) : 0.2135 REMARK 3 FREE R VALUE : 0.2316 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.6 REMARK 3 FREE R VALUE TEST SET COUNT : 281 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.8448 - 4.4404 1.00 2579 132 0.1991 0.1964 REMARK 3 2 4.4404 - 3.5270 1.00 2562 118 0.1898 0.2350 REMARK 3 3 3.5270 - 3.0819 1.00 2589 116 0.2335 0.2488 REMARK 3 4 3.0819 - 2.8004 1.00 2562 129 0.2991 0.3367 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.323 REMARK 3 B_SOL : 43.685 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.36 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.58 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.0000 REMARK 3 B22 (A**2) : 0.0000 REMARK 3 B33 (A**2) : 0.0000 REMARK 3 B12 (A**2) : 0.0000 REMARK 3 B13 (A**2) : 0.0000 REMARK 3 B23 (A**2) : 0.0000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 1005 REMARK 3 ANGLE : 0.653 1366 REMARK 3 CHIRALITY : 0.039 164 REMARK 3 PLANARITY : 0.002 180 REMARK 3 DIHEDRAL : 12.182 358 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESI 2:43) REMARK 3 ORIGIN FOR THE GROUP (A): 2.1549 46.2719 23.0853 REMARK 3 T TENSOR REMARK 3 T11: 0.3214 T22: 0.2040 REMARK 3 T33: 0.2820 T12: 0.0031 REMARK 3 T13: -0.1225 T23: -0.0707 REMARK 3 L TENSOR REMARK 3 L11: 0.7012 L22: 0.3542 REMARK 3 L33: 2.6627 L12: 0.4912 REMARK 3 L13: 0.2669 L23: 0.0253 REMARK 3 S TENSOR REMARK 3 S11: -0.0045 S12: -0.0027 S13: -0.1329 REMARK 3 S21: 0.1437 S22: -0.0267 S23: -0.1998 REMARK 3 S31: -0.4506 S32: -0.0760 S33: 0.0393 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESI 44:64) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5162 62.4750 27.8471 REMARK 3 T TENSOR REMARK 3 T11: 0.3537 T22: 0.1085 REMARK 3 T33: 0.3747 T12: -0.1931 REMARK 3 T13: 0.0299 T23: -0.1233 REMARK 3 L TENSOR REMARK 3 L11: 1.5385 L22: 1.6987 REMARK 3 L33: 3.6047 L12: 1.4742 REMARK 3 L13: 1.8841 L23: 2.4146 REMARK 3 S TENSOR REMARK 3 S11: 0.4134 S12: 0.0565 S13: -0.4181 REMARK 3 S21: -0.3331 S22: 0.2716 S23: 0.2036 REMARK 3 S31: -0.2760 S32: 0.3462 S33: -0.6813 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESI 65:136) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6935 52.3137 18.8487 REMARK 3 T TENSOR REMARK 3 T11: 0.1259 T22: 0.0483 REMARK 3 T33: 0.3105 T12: -0.0513 REMARK 3 T13: -0.1204 T23: -0.0397 REMARK 3 L TENSOR REMARK 3 L11: 3.1374 L22: 0.4163 REMARK 3 L33: 2.0934 L12: 0.7065 REMARK 3 L13: 1.9304 L23: 0.9155 REMARK 3 S TENSOR REMARK 3 S11: -0.1416 S12: 0.2286 S13: 0.5454 REMARK 3 S21: 0.1380 S22: 0.1281 S23: -0.4247 REMARK 3 S31: -0.1886 S32: 0.2314 S33: 0.0250 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 4ANC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-MAR-12. REMARK 100 THE PDBE ID CODE IS EBI-51464.

REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 107 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD (MX-225) REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6145 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.80 REMARK 200 RESOLUTION RANGE LOW (A) : 26.90 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 20.5 REMARK 200 R MERGE (I) : 0.09 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 31.60 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 21.0 REMARK 200 R MERGE FOR SHELL (I) : 0.43 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.30 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1K44 REMARK 200 REMARK 200 REMARK: NONE

REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.5 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULFATE, 0.1 M REMARK 280 TRIS-HCL, PH 8.5

REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 14555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 15555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 16555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 17555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 18555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 19555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 20555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 21555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 22555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 23555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 24555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 55.33950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.33950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.33950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.33950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 55.33950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.33950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 55.33950 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 55.33950 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 55.33950 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 55.33950 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 55.33950 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 55.33950 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 55.33950 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 55.33950 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 55.33950 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 55.33950 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 55.33950 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 55.33950 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 27.66975 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 83.00925 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 83.00925 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 27.66975 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 27.66975 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 27.66975 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 83.00925 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 83.00925 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 27.66975 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 83.00925 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 27.66975 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 83.00925 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 27.66975 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 83.00925 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 83.00925 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 83.00925 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 27.66975 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 83.00925 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 27.66975 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 27.66975 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 27.66975 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 83.00925 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 83.00925 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 27.66975 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 27.66975 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 83.00925 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 83.00925 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 83.00925 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 83.00925 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 27.66975 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 83.00925 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 27.66975 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 83.00925 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 27.66975 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 27.66975 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 27.66975 REMARK 290 REMARK 290 REMARK: NULL

REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.

REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 55.33950 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 55.33950 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 -55.33950 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 55.33950 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 27.66975 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 27.66975 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 27.66975 REMARK 350 BIOMT1 5 0.000000 0.000000 1.000000 -27.66975 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 83.00925 REMARK 350 BIOMT3 5 1.000000 0.000000 0.000000 27.66975 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 -27.66975 REMARK 350 BIOMT2 6 0.000000 0.000000 1.000000 27.66975 REMARK 350 BIOMT3 6 0.000000 1.000000 0.000000 -27.66975

REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2013 LIES ON A SPECIAL POSITION.

REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASP 93 TO ASN

REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1

REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 52 CG CD OE1 OE2 REMARK 470 HIS A 53 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 54 CG CD OE1 OE2 REMARK 470 LYS A 56 CG CD CE NZ REMARK 470 PRO A 57 CG CD REMARK 470 PHE A 58 CG CD1 CD2 CE1 CE2 CZ

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 115 -41.83 68.08 REMARK 500 REMARK 500 REMARK: NULL

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1K44 RELATED DB: PDB REMARK 900 MYCOBACTERIUM TUBERCULOSIS NUCLEOSIDE DIPHOSPHATE KINASE REMARK 900 RELATED ID: 4AND RELATED DB: PDB REMARK 900 CRYSTAL FORM II OF THE D93N MUTANT OF NUCLEOSIDE REMARK 900 DIPHOSPHATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS REMARK 900 RELATED ID: 4ANE RELATED DB: PDB REMARK 900 R80N MUTANT OF NUCLEOSIDE DIPHOSPHATE KINASE FROM REMARK 900 MYCOBACTERIUM TUBERCULOSIS

DBREF 4ANC A 1 136 UNP P84284 NDK_MYCTU 1 136

SEQADV 4ANC ASN A 93 UNP P84284 ASP 93 ENGINEERED MUTATION

SEQRES 1 A 136 MET THR GLU ARG THR LEU VAL LEU ILE LYS PRO ASP GLY SEQRES 2 A 136 ILE GLU ARG GLN LEU ILE GLY GLU ILE ILE SER ARG ILE SEQRES 3 A 136 GLU ARG LYS GLY LEU THR ILE ALA ALA LEU GLN LEU ARG SEQRES 4 A 136 THR VAL SER ALA GLU LEU ALA SER GLN HIS TYR ALA GLU SEQRES 5 A 136 HIS GLU GLY LYS PRO PHE PHE GLY SER LEU LEU GLU PHE SEQRES 6 A 136 ILE THR SER GLY PRO VAL VAL ALA ALA ILE VAL GLU GLY SEQRES 7 A 136 THR ARG ALA ILE ALA ALA VAL ARG GLN LEU ALA GLY GLY SEQRES 8 A 136 THR ASN PRO VAL GLN ALA ALA ALA PRO GLY THR ILE ARG SEQRES 9 A 136 GLY ASP PHE ALA LEU GLU THR GLN PHE ASN LEU VAL HIS SEQRES 10 A 136 GLY SER ASP SER ALA GLU SER ALA GLN ARG GLU ILE ALA SEQRES 11 A 136 LEU TRP PHE PRO GLY ALA

FORMUL 2 HOH *19(H2 O)

HELIX 1 1 LYS A 10 ARG A 16 1 7 HELIX 2 2 LEU A 18 GLY A 30 1 13 HELIX 3 3 SER A 42 TYR A 50 1 9 HELIX 4 4 PHE A 58 THR A 67 1 10 HELIX 5 5 ARG A 80 GLY A 90 1 11 HELIX 6 6 THR A 102 ALA A 108 1 7 HELIX 7 7 SER A 121 PHE A 133 1 13

SHEET 1 AA 4 THR A 32 ARG A 39 0 SHEET 2 AA 4 VAL A 71 GLY A 78 -1 O VAL A 71 N ARG A 39 SHEET 3 AA 4 GLU A 3 ILE A 9 -1 O GLU A 3 N GLY A 78 SHEET 4 AA 4 VAL A 116 GLY A 118 -1 O HIS A 117 N LEU A 8

CRYST1 110.679 110.679 110.679 90.00 90.00 90.00 P 43 3 2 24

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 0.009035 0.000000 0.000000 0.00000

SCALE2 0.000000 0.009035 0.000000 0.00000

SCALE3 0.000000 0.000000 0.009035 0.00000