10 20 30 40 50 60 70 80 4AC1 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 12-DEC-11 4AC1
TITLE THE STRUCTURE OF A FUNGAL ENDO-BETA-N-ACETYLGLUCOSAMINIDASE FROM TITLE 2 GLYCOSYL HYDROLASE FAMILY 18, AT 1.3A RESOLUTION
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDO-N-ACETYL-BETA-D-GLUCOSAMINIDASE; COMPND 3 CHAIN: X; COMPND 4 FRAGMENT: GLYCOSIDE HYDROLASE, RESIDUES 31-313; COMPND 5 SYNONYM: ENDO-BETA-N-ACETYLGLUCOSAMINIDASE; COMPND 6 EC: 3.2.1.96
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HYPOCREA JECORINA; SOURCE 3 ORGANISM_TAXID: 51453; SOURCE 4 STRAIN: GICC20000150
KEYWDS HYDROLASE, GLYCOSIDE HYDROLASE FAMILY 18, DEGLYCOSYLATION
EXPDTA X-RAY DIFFRACTION
AUTHOR I.STALS,S.KARKEHABADI,B.DEVREESE,S.KIM,M.WARD,M.SANDGREN
REVDAT 1 22-AUG-12 4AC1 0
JRNL AUTH I.STALS,S.KARKEHABADI,S.KIM,M.WARD,A.VAN LANDSCHOOT, JRNL AUTH 2 B.DEVREESE,M.SANDGREN JRNL TITL HIGH RESOLUTION CRYSTAL STRUCTURE OF THE JRNL TITL 2 ENDO-N-ACETYL-BETA- D-GLUCOSAMINIDASE RESPONSIBLE FOR THE JRNL TITL 3 DEGLYCOSYLATION OF HYPOCREA JECORINA CELLULASES. JRNL REF PLOS ONE V. 7 40854 2012 JRNL REFN ISSN 1932-6203 JRNL PMID 22859955 JRNL DOI 10.1371/JOURNAL.PONE.0040854
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH I.STALS,B.SAMYN,K.SERGEANT,T.WHITE,K.HOORELBEKE,A.COOREVITS, REMARK 1 AUTH 2 B.DEVREESE,M.CLAEYSSENS,K.PIENS REMARK 1 TITL IDENTIFICATION OF A GENE CODING FOR A DEGLYCOSYLATING REMARK 1 TITL 2 ENZYME IN HYPOCREA JECORINA. REMARK 1 REF FEMS MICROBIOL.LETT. V. 303 9 2010 REMARK 1 REFN ISSN 0378-1097 REMARK 1 PMID 20015338 REMARK 1 DOI 10.1111/J.1574-6968.2009.01849.X
REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 99.48 REMARK 3 NUMBER OF REFLECTIONS : 60140 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.18473 REMARK 3 R VALUE (WORKING SET) : 0.18383 REMARK 3 FREE R VALUE : 0.20179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 3206 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.301 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.334 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4140 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.288 REMARK 3 BIN FREE R VALUE SET COUNT : 213 REMARK 3 BIN FREE R VALUE : 0.299 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2218 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 434 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.531 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.09 REMARK 3 B22 (A**2) : -0.15 REMARK 3 B33 (A**2) : 0.06 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.01 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.057 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.057 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.035 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.791 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2322 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3185 ; 1.240 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 300 ; 6.157 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 104 ;38.787 ;24.808 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 344 ;10.892 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;17.739 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 358 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1819 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1439 ; 0.547 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2328 ; 0.963 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 883 ; 1.420 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 848 ; 2.156 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. THERE ARE SOME DISORDERED ZINC ATOMS AND WATERS REMARK 3 THAT ARE HARD TO REFINE PROPERLY.
REMARK 4 REMARK 4 4AC1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-DEC-11. REMARK 100 THE PDBE ID CODE IS EBI-49497.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03790 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63365 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.30 REMARK 200 RESOLUTION RANGE LOW (A) : 19.42 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.5 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.9 REMARK 200 R MERGE (I) : 0.07 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.30 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.6 REMARK 200 R MERGE FOR SHELL (I) : 0.20 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.50 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AS DESCRIBED IN PUBLICATION
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.93700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO X 152 O HOH X 2265 2.18 REMARK 500 ZN ZN X 1294 O HOH X 2251 1.17 REMARK 500 O HOH X 2199 O HOH X 2260 2.18 REMARK 500 O HOH X 2248 O HOH X 2249 1.23 REMARK 500 O HOH X 2250 O HOH X 2251 1.43 REMARK 500 O HOH X 2250 O HOH X 2309 1.91 REMARK 500 O HOH X 2309 O HOH X 2316 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER X 245 CB A SER X 245 OG A -0.183 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA X 36 63.70 -116.19 REMARK 500 ASN X 56 -118.66 54.21 REMARK 500 THR X 98 -110.05 -127.95 REMARK 500 SER X 168 -152.23 -138.55 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN X1291 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH X2248 O REMARK 620 2 HOH X2249 O 23.7 REMARK 620 3 GLU X 131 OE2 91.9 89.4 REMARK 620 4 ZN X1294 ZN 129.0 105.3 82.4 REMARK 620 5 HOH X2251 O 100.3 77.1 94.9 31.1 REMARK 620 6 HOH X2393 O 86.5 89.3 178.2 99.2 86.1 REMARK 620 7 HOH X2242 O 88.0 111.6 92.8 142.7 168.5 86.5 REMARK 620 8 ACT X1288 OXT 171.5 164.4 86.9 59.2 88.1 94.7 83.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN X1292 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU X 271 OE1 REMARK 620 2 GLU X 274 OE2 89.9 REMARK 620 3 HOH X2414 O 90.4 92.9 REMARK 620 4 HOH X2415 O 90.1 176.7 90.4 REMARK 620 5 HOH X2421 O 178.9 91.2 89.7 88.8 REMARK 620 6 HOH X2413 O 93.4 90.0 175.3 86.7 86.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN X1293 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP X 167 OD2 REMARK 620 2 ASN X 213 OD1 99.6 REMARK 620 3 HOH X2284 O 100.2 90.3 REMARK 620 4 HOH X2285 O 87.9 171.8 91.7 REMARK 620 5 HOH X2286 O 85.6 90.2 174.0 87.0 REMARK 620 6 HOH X2345 O 170.1 85.5 88.2 86.6 86.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN X1294 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU X 131 OE2 REMARK 620 2 GLN X 193 OE1 141.4 REMARK 620 3 ACT X1288 O 127.2 74.7 REMARK 620 4 ZN X1291 ZN 53.9 162.2 87.9 REMARK 620 5 HOH X2250 O 87.3 84.1 143.9 109.0 REMARK 620 6 ACT X1288 OXT 78.5 102.0 52.1 68.9 163.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN X1295 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH X2302 O REMARK 620 2 HOH X2306 O 66.7 REMARK 620 3 ASP X 186 OD1 130.0 159.4 REMARK 620 4 ASP X 186 OD2 74.0 136.6 56.2 REMARK 620 5 HOH X2301 O 83.8 95.2 98.5 98.2 REMARK 620 6 HOH X2305 O 111.1 83.3 79.0 94.6 162.7 REMARK 620 7 HOH X2303 O 149.8 83.1 79.2 133.5 100.9 61.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN X1296 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS X 54 NE2 REMARK 620 2 HOH X2119 O 108.4 REMARK 620 3 HOH X2120 O 95.9 109.8 REMARK 620 4 HOH X2434 O 159.8 85.1 93.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN X1297 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP X 153 OD1 REMARK 620 2 ACT X1289 OXT 97.2 REMARK 620 3 HOH X2274 O 83.8 96.1 REMARK 620 4 ASP X 153 OD2 56.6 106.6 136.0 REMARK 620 5 ASP X 206 OD1 166.6 87.3 83.1 134.0 REMARK 620 6 ASP X 206 OD2 121.6 141.2 90.5 94.4 55.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN X1298 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS X 54 NE2 REMARK 620 2 HOH X2120 O 81.7 REMARK 620 3 HOH X2434 O 142.2 89.9 REMARK 620 N 1 2
REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "XA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL.
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT X1288 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT X1289 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT X1290 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN X1291 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN X1292 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN X1293 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN X1294 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN X1295 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN X1296 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN X1297 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN X1298 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR MONO-SACCHARIDE REMARK 800 NAG X 302 BOUND TO ASN X 70 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR MONO-SACCHARIDE REMARK 800 NAG X 301 BOUND TO ASN X 240
REMARK 999 REMARK 999 SEQUENCE REMARK 999 MATURE PEPTIDE FROM PRECURSOR CAZ16624.1.
DBREF 4AC1 X 5 287 UNP C4RA89 C4RA89_HYPJE 31 313
SEQADV 4AC1 VAL X 281 UNP C4RA89 GLU 307 CONFLICT
SEQRES 1 X 283 ASP LEU PRO ARG LEU ILE VAL TYR PHE GLN THR THR HIS SEQRES 2 X 283 ASP SER SER ASN ARG PRO ILE SER MET LEU PRO LEU ILE SEQRES 3 X 283 THR GLU LYS GLY ILE ALA LEU THR HIS LEU ILE VAL CYS SEQRES 4 X 283 SER PHE HIS ILE ASN GLN GLY GLY VAL VAL HIS LEU ASN SEQRES 5 X 283 ASP PHE PRO PRO ASP ASP PRO HIS PHE TYR THR LEU TRP SEQRES 6 X 283 ASN GLU THR ILE THR MET LYS GLN ALA GLY VAL LYS VAL SEQRES 7 X 283 MET GLY MET VAL GLY GLY ALA ALA PRO GLY SER PHE ASN SEQRES 8 X 283 THR GLN THR LEU ASP SER PRO ASP SER ALA THR PHE GLU SEQRES 9 X 283 HIS TYR TYR GLY GLN LEU ARG ASP ALA ILE VAL ASN PHE SEQRES 10 X 283 GLN LEU GLU GLY MET ASP LEU ASP VAL GLU GLN PRO MET SEQRES 11 X 283 SER GLN GLN GLY ILE ASP ARG LEU ILE ALA ARG LEU ARG SEQRES 12 X 283 ALA ASP PHE GLY PRO ASP PHE LEU ILE THR LEU ALA PRO SEQRES 13 X 283 VAL ALA SER ALA LEU GLU ASP SER SER ASN LEU SER GLY SEQRES 14 X 283 PHE SER TYR THR ALA LEU GLN GLN THR GLN GLY ASN ASP SEQRES 15 X 283 ILE ASP TRP TYR ASN THR GLN PHE TYR SER GLY PHE GLY SEQRES 16 X 283 SER MET ALA ASP THR SER ASP TYR ASP ARG ILE VAL ALA SEQRES 17 X 283 ASN GLY PHE ALA PRO ALA LYS VAL VAL ALA GLY GLN LEU SEQRES 18 X 283 THR THR PRO GLU GLY ALA GLY TRP ILE PRO THR SER SER SEQRES 19 X 283 LEU ASN ASN THR ILE VAL SER LEU VAL SER GLU TYR GLY SEQRES 20 X 283 GLN ILE GLY GLY VAL MET GLY TRP GLU TYR PHE ASN SER SEQRES 21 X 283 LEU PRO GLY GLY THR ALA GLU PRO TRP GLU TRP ALA GLN SEQRES 22 X 283 ILE VAL THR VAL ILE LEU ARG PRO GLY LEU
HET NAG X 301 14 HET NAG X 302 14 HET ACT X1288 4 HET ACT X1289 4 HET ACT X1290 4 HET ZN X1291 1 HET ZN X1292 1 HET ZN X1293 1 HET ZN X1294 1 HET ZN X1295 1 HET ZN X1296 1 HET ZN X1297 1 HET ZN X1298 1
HETNAM NAG N-ACETYL-D-GLUCOSAMINE HETNAM ACT ACETATE ION HETNAM ZN ZINC ION
FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 3 ACT 3(C2 H3 O2 1-) FORMUL 4 ZN 8(ZN 2+) FORMUL 5 HOH *434(H2 O)
HELIX 1 1 LEU X 27 GLU X 32 1 6 HELIX 2 2 ASP X 62 HIS X 64 5 3 HELIX 3 3 PHE X 65 ALA X 78 1 14 HELIX 4 4 ASP X 103 PHE X 121 1 19 HELIX 5 5 SER X 135 GLY X 151 1 17 HELIX 6 6 ALA X 162 GLU X 166 5 5 HELIX 7 7 SER X 175 GLY X 184 1 10 HELIX 8 8 ASN X 185 ILE X 187 5 3 HELIX 9 9 THR X 204 ASN X 213 1 10 HELIX 10 10 ALA X 216 ALA X 218 5 3 HELIX 11 11 PRO X 235 GLY X 251 1 17 HELIX 12 12 TRP X 273 ARG X 284 1 12
SHEET 1 XA10 ARG X 8 PHE X 13 0 SHEET 2 XA10 GLY X 255 TRP X 259 1 O VAL X 256 N ILE X 10 SHEET 3 XA10 VAL X 220 LEU X 225 1 O ALA X 222 N MET X 257 SHEET 4 XA10 TRP X 189 GLN X 193 1 O TYR X 190 N VAL X 221 SHEET 5 XA10 LEU X 155 LEU X 158 1 O LEU X 158 N ASN X 191 SHEET 6 XA10 GLY X 125 ASP X 129 1 O MET X 126 N THR X 157 SHEET 7 XA10 LYS X 81 GLY X 87 1 O GLY X 84 N ASP X 127 SHEET 8 XA10 HIS X 39 HIS X 46 1 O LEU X 40 N MET X 83 SHEET 9 XA10 ARG X 8 PHE X 13 0
LINK ND2 ASN X 70 C1 NAG X 302 1555 1555 1.44 LINK ND2 ASN X 240 C1 NAG X 301 1555 1555 1.44 LINK OXT ACT X1288 ZN ZN X1294 1555 1555 1.91 LINK OXT ACT X1288 ZN ZN X1291 1555 1555 2.08 LINK O ACT X1288 ZN ZN X1294 1555 1555 2.67 LINK OXT ACT X1289 ZN ZN X1297 1555 1555 1.89 LINK ZN ZN X1291 OE2 GLU X 131 1555 1555 2.05 LINK ZN ZN X1291 ZN ZN X1294 1555 1555 1.75 LINK ZN ZN X1291 O HOH X2251 1555 1555 2.25 LINK ZN ZN X1291 O HOH X2393 1555 1555 2.17 LINK ZN ZN X1291 O HOH X2242 1555 1555 2.14 LINK ZN ZN X1291 O HOH X2249 1555 1555 2.70 LINK ZN ZN X1291 O HOH X2248 1555 1555 1.89 LINK ZN ZN X1292 O HOH X2414 1555 1555 1.96 LINK ZN ZN X1292 O HOH X2415 1555 1555 2.10 LINK ZN ZN X1292 O HOH X2421 1555 1555 2.11 LINK ZN ZN X1292 O HOH X2413 1555 1555 2.25 LINK ZN ZN X1292 OE2 GLU X 274 1555 1555 2.09 LINK ZN ZN X1292 OE1 GLU X 271 1555 1555 2.10 LINK ZN ZN X1293 O HOH X2284 1555 1555 1.98 LINK ZN ZN X1293 O HOH X2285 1555 1555 2.05 LINK ZN ZN X1293 O HOH X2286 1555 1555 2.18 LINK ZN ZN X1293 O HOH X2345 1555 1555 1.93 LINK ZN ZN X1293 OD1 ASN X 213 1555 1555 2.08 LINK ZN ZN X1293 OD2 ASP X 167 1555 1555 2.13 LINK ZN ZN X1294 O HOH X2250 1555 1555 2.08 LINK ZN ZN X1294 OE1 GLN X 193 1555 1555 2.39 LINK ZN ZN X1294 OE2 GLU X 131 1555 1555 2.52 LINK ZN ZN X1295 OD2 ASP X 186 1555 1555 1.94 LINK ZN ZN X1295 O HOH X2301 1555 1555 2.16 LINK ZN ZN X1295 O HOH X2305 1555 1555 2.29 LINK ZN ZN X1295 O HOH X2303 1555 1555 2.66 LINK ZN ZN X1295 OD1 ASP X 186 1555 1555 2.56 LINK ZN ZN X1295 O HOH X2306 1555 1555 1.98 LINK ZN ZN X1295 O HOH X2302 1555 1555 2.37 LINK ZN ZN X1296 O HOH X2434 1555 1555 2.15 LINK ZN ZN X1296 O HOH X2120 1555 1555 1.92 LINK ZN ZN X1296 O HOH X2119 1555 1555 2.01 LINK ZN ZN X1296 NE2 HIS X 54 1555 1555 2.07 LINK ZN ZN X1297 OD1 ASP X 206 1555 1655 2.57 LINK ZN ZN X1297 OD2 ASP X 206 1555 1655 1.97 LINK ZN ZN X1297 OD2 ASP X 153 1555 1555 2.28 LINK ZN ZN X1297 O HOH X2274 1555 1555 2.19 LINK ZN ZN X1297 OD1 ASP X 153 1555 1555 2.32 LINK ZN ZN X1298 O HOH X2434 1555 1555 2.03 LINK ZN ZN X1298 O HOH X2120 1555 1555 2.17 LINK ZN ZN X1298 NE2 HIS X 54 1555 1555 2.36
CISPEP 1 LEU X 6 PRO X 7 0 3.05 CISPEP 2 CYS X 43 SER X 44 0 -7.19 CISPEP 3 TRP X 259 GLU X 260 0 -7.65 CISPEP 4 LEU X 265 PRO X 266 0 4.98
SITE 1 AC1 10 ASP X 129 GLU X 131 GLN X 193 TYR X 195 SITE 2 AC1 10 TRP X 259 ZN X1291 ZN X1294 HOH X2242 SITE 3 AC1 10 HOH X2251 HOH X2393 SITE 1 AC2 9 PRO X 152 ASP X 153 ASP X 206 ARG X 209 SITE 2 AC2 9 ZN X1297 HOH X2274 HOH X2280 HOH X2330 SITE 3 AC2 9 HOH X2433 SITE 1 AC3 7 ILE X 30 ALA X 36 LEU X 37 ALA X 78 SITE 2 AC3 7 GLY X 79 VAL X 80 HOH X2063 SITE 1 AC4 8 GLU X 131 ACT X1288 ZN X1294 HOH X2242 SITE 2 AC4 8 HOH X2248 HOH X2249 HOH X2251 HOH X2393 SITE 1 AC5 6 GLU X 271 GLU X 274 HOH X2413 HOH X2414 SITE 2 AC5 6 HOH X2415 HOH X2421 SITE 1 AC6 6 ASP X 167 ASN X 213 HOH X2284 HOH X2285 SITE 2 AC6 6 HOH X2286 HOH X2345 SITE 1 AC7 7 GLU X 131 GLN X 193 ACT X1288 ZN X1291 SITE 2 AC7 7 HOH X2250 HOH X2251 HOH X2393 SITE 1 AC8 6 ASP X 186 HOH X2301 HOH X2302 HOH X2303 SITE 2 AC8 6 HOH X2305 HOH X2306 SITE 1 AC9 5 HIS X 54 ZN X1298 HOH X2119 HOH X2120 SITE 2 AC9 5 HOH X2434 SITE 1 BC1 4 ASP X 153 ASP X 206 ACT X1289 HOH X2274 SITE 1 BC2 5 HIS X 54 ZN X1296 HOH X2119 HOH X2120 SITE 2 BC2 5 HOH X2434 SITE 1 BC3 6 TYR X 66 TRP X 69 ASN X 70 HOH X2152 SITE 2 BC3 6 HOH X2431 HOH X2432 SITE 1 BC4 4 ASN X 240 VAL X 281 HOH X2380 HOH X2423
CRYST1 35.438 63.874 59.360 90.00 100.97 90.00 P 1 21 1 2
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.028218 0.000000 0.005470 0.00000
SCALE2 0.000000 0.015656 0.000000 0.00000
SCALE3 0.000000 0.000000 0.017160 0.00000