10 20 30 40 50 60 70 80 3ZV3 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 23-JUL-11 3ZV3
TITLE CRYSTAL STRUCTURE OF CIS-BIPHENYL-2,3-DIHYDRODIOL-2,3- TITLE 2 DEHYDROGENASE (BPHB)FROM PANDORAEA PNOMENUSA STRAIN B- TITLE 3 356 IN INTERMEDIATE STATE OF SUBSTRATE BINDING LOOP
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CIS-2,3-DIHYDROBIPHENYL-2,3-DIOL DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 2,3-DIHYDRO-2,3-DIHYDROXYBIPHENYL DEHYDROGENASE, COMPND 5 2,3-DIHYDROXY-4-PHENYLHEXA-4,6-DIENE DEHYDROGENASE, B2\,3D, COMPND 6 BIPHENYL-2,3-DIHYDRO-2,3-DIOL DEHYDROGENASE, BIPHENYL-CIS-DIOL COMPND 7 DEHYDROGENASE; COMPND 8 EC: 1.3.1.56; COMPND 9 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PANDORAEA PNOMENUSA; SOURCE 3 ORGANISM_TAXID: 93220; SOURCE 4 STRAIN: B-356; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET14B
KEYWDS OXIDOREDUCTASE, SHORT CHAIN DEHYDROGENASE/OXIDOREDUCTASE, SDR, KEYWDS 2 COMAMONAS TESTOSTERONI
EXPDTA X-RAY DIFFRACTION
AUTHOR S.DHINDWAL,D.N.PATIL,P.KUMAR
REVDAT 2 26-OCT-11 3ZV3 1 JRNL REVDAT 1 31-AUG-11 3ZV3 0
JRNL AUTH S.DHINDWAL,D.N.PATIL,M.MOHAMMADI,M.SYLVESTRE,S.TOMAR,P.KUMAR JRNL TITL BIOCHEMICAL STUDIES AND LIGAND-BOUND STRUCTURES OF BIPHENYL JRNL TITL 2 DEHYDROGENASE FROM PANDORAEA PNOMENUSA STRAIN B-356 REVEAL A JRNL TITL 3 BASIS FOR BROAD SPECIFICITY OF THE ENZYME. JRNL REF J.BIOL.CHEM. V. 286 37011 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21880718 JRNL DOI 10.1074/JBC.M111.291013
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.N.PATIL,S.TOMAR,M.SYLVESTRE,P.KUMAR REMARK 1 TITL EXPRESSION, PURIFICATION, CRYSTALLIZATION AND PRELIMINARY REMARK 1 TITL 2 CRYSTALLOGRAPHIC STUDIES OF CIS- REMARK 1 TITL 3 BIPHENYL-2,3-DIHYDRODIOL-2,3-DEHYDROGENASE FROM PANDORAEA REMARK 1 TITL 4 PNOMENUSA B-356. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 66 1517 2010 REMARK 1 REFN ISSN 1744-3091 REMARK 1 PMID 21045310 REMARK 1 DOI 10.1107/S1744309110036894
REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 99.08 REMARK 3 NUMBER OF REFLECTIONS : 11486 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.26917 REMARK 3 R VALUE (WORKING SET) : 0.26788 REMARK 3 FREE R VALUE : 0.29460 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 601 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.900 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.975 REMARK 3 REFLECTION IN BIN (WORKING SET) : 819 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.386 REMARK 3 BIN FREE R VALUE SET COUNT : 45 REMARK 3 BIN FREE R VALUE : 0.403 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3916 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 39 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.134 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.376 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.11 REMARK 3 B22 (A**2) : -2.11 REMARK 3 B33 (A**2) : 4.21 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.512 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.427 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.302 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.891 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.864 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3986 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2654 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5408 ; 0.999 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6467 ; 0.867 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 531 ; 5.451 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;38.058 ;23.247 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 621 ;16.854 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;15.913 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 622 ; 0.051 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4543 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 808 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 883 ; 0.194 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2920 ; 0.202 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1937 ; 0.171 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2142 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 102 ; 0.163 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.033 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 41 ; 0.124 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 95 ; 0.220 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.261 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS.
REMARK 4 REMARK 4 3ZV3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JUL-11. REMARK 100 THE PDBE ID CODE IS EBI-49147.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE (MAR345) REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL 2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13445 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.80 REMARK 200 RESOLUTION RANGE LOW (A) : 100.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.8 REMARK 200 R MERGE (I) : 0.15 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.44 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 69.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.5 REMARK 200 R MERGE FOR SHELL (I) : 0.85 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.08 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1BDB REMARK 200 REMARK 200 REMARK: NONE
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM MALONATE, PEG3350
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.47350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 37.86750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.86750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 134.21025 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.86750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 37.86750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 44.73675 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.86750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.86750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 134.21025 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 37.86750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.86750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 44.73675 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 89.47350 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -142.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -89.47350
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 190 REMARK 465 LEU A 191 REMARK 465 ARG A 192 REMARK 465 GLY A 193 REMARK 465 PRO A 194 REMARK 465 SER A 195 REMARK 465 SER A 196 REMARK 465 LEU A 197 REMARK 465 GLY A 198 REMARK 465 LEU A 199 REMARK 465 SER A 200 REMARK 465 GLU A 201 REMARK 465 GLN A 202 REMARK 465 SER A 203 REMARK 465 ILE A 204 REMARK 465 SER A 205 REMARK 465 ARG A 277 REMARK 465 GLU A 278 REMARK 465 GLY A 279 REMARK 465 GLN A 280 REMARK 465 GLU A 281 REMARK 465 ARG B 277 REMARK 465 GLU B 278 REMARK 465 GLY B 279 REMARK 465 GLN B 280 REMARK 465 GLU B 281
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 276 CA C O CB CG OD1 ND2 REMARK 470 ASN B 276 CA C O CB CG OD1 ND2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2003 O HOH B 2003 7555 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 86 -36.31 -140.03 REMARK 500 ILE A 141 -120.64 -90.74 REMARK 500 SER A 142 149.53 158.76 REMARK 500 ASN A 143 -31.20 -38.25 REMARK 500 PHE A 146 -41.50 -137.03 REMARK 500 ALA A 183 77.78 -117.83 REMARK 500 ARG A 238 -79.48 -14.49 REMARK 500 ASP A 268 54.31 -101.87 REMARK 500 ASN A 274 66.58 30.81 REMARK 500 ILE B 141 -130.90 -108.02 REMARK 500 SER B 142 157.90 178.66 REMARK 500 ASN B 188 44.83 -94.25 REMARK 500 LEU B 191 96.09 49.07 REMARK 500 SER B 200 -66.64 -11.87 REMARK 500 SER B 205 -43.47 -152.43 REMARK 500 SER B 206 87.80 -68.13 REMARK 500 ASN B 274 88.50 72.80 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Y99 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CIS-BIPHENYL-2,3-DIHYDRODIOL-2, REMARK 900 3-DEHYDROGENASE (BPHB)FROM PANDORAEA PNOMENUSA STRAIN B REMARK 900 -356 COMPLEX WITH CO-ENZYME NAD REMARK 900 RELATED ID: 2Y93 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CIS-BIPHENYL-2,3-DIHYDRODIOL-2, REMARK 900 3-DEHYDROGENASE (BPHB)FROM PANDORAEA PNOMENUSA STRAIN B REMARK 900 -356. REMARK 900 RELATED ID: 3ZV5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CIS-BIPHENYL-2,3-DIHYDRODIOL-2, REMARK 900 3-DEHYDROGENASE (BPHB)FROM PANDORAEA PNOMENUSA STRAIN B REMARK 900 -356 COMPLEX WITH CO-ENZYME NAD AND PRODUCT 2,3- REMARK 900 DIHYDROXYBIPHENYL REMARK 900 RELATED ID: 3ZV6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CIS-BIPHENYL-2,3-DIHYDRODIOL-2, REMARK 900 3-DEHYDROGENASE (BPHB)FROM PANDORAEA PNOMENUSA STRAIN B REMARK 900 -356 COMPLEX WITH CO-ENZYME NAD AND PRODUCT ANALOG REMARK 900 4,4'-DIHYDROXYBIPHENYL REMARK 900 RELATED ID: 3ZV4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CIS-BIPHENYL-2,3-DIHYDRODIOL-2, REMARK 900 3-DEHYDROGENASE (BPHB)FROM PANDORAEA PNOMENUSA STRAIN B REMARK 900 -356 IN APO FORM AT 1.8 ANGSTROM
DBREF 3ZV3 A 1 281 UNP Q46381 BPHB_COMTE 1 281 DBREF 3ZV3 B 1 281 UNP Q46381 BPHB_COMTE 1 281
SEQRES 1 A 281 MET LYS LEU THR GLY GLU VAL ALA LEU ILE THR GLY GLY SEQRES 2 A 281 ALA SER GLY LEU GLY ARG ALA LEU VAL ASP ARG PHE VAL SEQRES 3 A 281 ALA GLU GLY ALA ARG VAL ALA VAL LEU ASP LYS SER ALA SEQRES 4 A 281 GLU ARG LEU ARG GLU LEU GLU VAL ALA HIS GLY GLY ASN SEQRES 5 A 281 ALA VAL GLY VAL VAL GLY ASP VAL ARG SER LEU GLN ASP SEQRES 6 A 281 GLN LYS ARG ALA ALA GLU ARG CYS LEU ALA ALA PHE GLY SEQRES 7 A 281 LYS ILE ASP THR LEU ILE PRO ASN ALA GLY ILE TRP ASP SEQRES 8 A 281 TYR SER THR ALA LEU ALA ASP LEU PRO GLU ASP LYS ILE SEQRES 9 A 281 ASP ALA ALA PHE ASP ASP ILE PHE HIS VAL ASN VAL LYS SEQRES 10 A 281 GLY TYR ILE HIS ALA VAL LYS ALA CYS LEU PRO ALA LEU SEQRES 11 A 281 VAL SER SER ARG GLY SER VAL VAL PHE THR ILE SER ASN SEQRES 12 A 281 ALA GLY PHE TYR PRO ASN GLY GLY GLY PRO LEU TYR THR SEQRES 13 A 281 ALA THR LYS HIS ALA VAL VAL GLY LEU VAL ARG GLN MET SEQRES 14 A 281 ALA PHE GLU LEU ALA PRO HIS VAL ARG VAL ASN GLY VAL SEQRES 15 A 281 ALA PRO GLY GLY MET ASN THR ASP LEU ARG GLY PRO SER SEQRES 16 A 281 SER LEU GLY LEU SER GLU GLN SER ILE SER SER VAL PRO SEQRES 17 A 281 LEU ALA ASP MET LEU LYS SER VAL LEU PRO ILE GLY ARG SEQRES 18 A 281 MET PRO ALA LEU GLU GLU TYR THR GLY ALA TYR VAL PHE SEQRES 19 A 281 PHE ALA THR ARG GLY ASP SER LEU PRO ALA THR GLY ALA SEQRES 20 A 281 LEU LEU ASN TYR ASP GLY GLY MET GLY VAL ARG GLY PHE SEQRES 21 A 281 LEU THR ALA ALA GLY GLY ALA ASP LEU PRO GLU LYS LEU SEQRES 22 A 281 ASN ILE ASN ARG GLU GLY GLN GLU SEQRES 1 B 281 MET LYS LEU THR GLY GLU VAL ALA LEU ILE THR GLY GLY SEQRES 2 B 281 ALA SER GLY LEU GLY ARG ALA LEU VAL ASP ARG PHE VAL SEQRES 3 B 281 ALA GLU GLY ALA ARG VAL ALA VAL LEU ASP LYS SER ALA SEQRES 4 B 281 GLU ARG LEU ARG GLU LEU GLU VAL ALA HIS GLY GLY ASN SEQRES 5 B 281 ALA VAL GLY VAL VAL GLY ASP VAL ARG SER LEU GLN ASP SEQRES 6 B 281 GLN LYS ARG ALA ALA GLU ARG CYS LEU ALA ALA PHE GLY SEQRES 7 B 281 LYS ILE ASP THR LEU ILE PRO ASN ALA GLY ILE TRP ASP SEQRES 8 B 281 TYR SER THR ALA LEU ALA ASP LEU PRO GLU ASP LYS ILE SEQRES 9 B 281 ASP ALA ALA PHE ASP ASP ILE PHE HIS VAL ASN VAL LYS SEQRES 10 B 281 GLY TYR ILE HIS ALA VAL LYS ALA CYS LEU PRO ALA LEU SEQRES 11 B 281 VAL SER SER ARG GLY SER VAL VAL PHE THR ILE SER ASN SEQRES 12 B 281 ALA GLY PHE TYR PRO ASN GLY GLY GLY PRO LEU TYR THR SEQRES 13 B 281 ALA THR LYS HIS ALA VAL VAL GLY LEU VAL ARG GLN MET SEQRES 14 B 281 ALA PHE GLU LEU ALA PRO HIS VAL ARG VAL ASN GLY VAL SEQRES 15 B 281 ALA PRO GLY GLY MET ASN THR ASP LEU ARG GLY PRO SER SEQRES 16 B 281 SER LEU GLY LEU SER GLU GLN SER ILE SER SER VAL PRO SEQRES 17 B 281 LEU ALA ASP MET LEU LYS SER VAL LEU PRO ILE GLY ARG SEQRES 18 B 281 MET PRO ALA LEU GLU GLU TYR THR GLY ALA TYR VAL PHE SEQRES 19 B 281 PHE ALA THR ARG GLY ASP SER LEU PRO ALA THR GLY ALA SEQRES 20 B 281 LEU LEU ASN TYR ASP GLY GLY MET GLY VAL ARG GLY PHE SEQRES 21 B 281 LEU THR ALA ALA GLY GLY ALA ASP LEU PRO GLU LYS LEU SEQRES 22 B 281 ASN ILE ASN ARG GLU GLY GLN GLU
FORMUL 3 HOH *39(H2 O)
HELIX 1 1 SER A 15 ALA A 27 1 13 HELIX 2 2 SER A 38 HIS A 49 1 12 HELIX 3 3 SER A 62 GLY A 78 1 17 HELIX 4 4 ALA A 95 LEU A 99 5 5 HELIX 5 5 LYS A 103 VAL A 116 1 14 HELIX 6 6 VAL A 116 ARG A 134 1 19 HELIX 7 7 SER A 142 PHE A 146 5 5 HELIX 8 8 GLY A 152 LEU A 173 1 22 HELIX 9 9 PRO A 208 VAL A 216 1 9 HELIX 10 10 ALA A 224 TYR A 228 5 5 HELIX 11 11 THR A 229 ALA A 236 1 8 HELIX 12 12 GLY A 254 ARG A 258 5 5 HELIX 13 13 LEU A 269 LEU A 273 5 5 HELIX 14 14 GLY B 16 GLU B 28 1 13 HELIX 15 15 SER B 38 GLY B 50 1 13 HELIX 16 16 SER B 62 GLY B 78 1 17 HELIX 17 17 PRO B 100 VAL B 116 1 17 HELIX 18 18 VAL B 116 SER B 133 1 18 HELIX 19 19 SER B 142 PHE B 146 5 5 HELIX 20 20 GLY B 152 LEU B 173 1 22 HELIX 21 21 PRO B 208 LEU B 213 1 6 HELIX 22 22 LYS B 214 VAL B 216 5 3 HELIX 23 23 ALA B 224 TYR B 228 5 5 HELIX 24 24 THR B 229 THR B 237 1 9 HELIX 25 25 GLY B 254 ARG B 258 5 5 HELIX 26 26 ASP B 268 ASN B 274 1 7
SHEET 1 AA 7 ALA A 53 VAL A 57 0 SHEET 2 AA 7 ALA A 30 ASP A 36 1 O VAL A 32 N VAL A 54 SHEET 3 AA 7 GLU A 6 THR A 11 1 O GLU A 6 N ARG A 31 SHEET 4 AA 7 THR A 82 ILE A 84 1 O THR A 82 N LEU A 9 SHEET 5 AA 7 SER A 136 THR A 140 1 O SER A 136 N LEU A 83 SHEET 6 AA 7 ARG A 178 PRO A 184 1 O ARG A 178 N VAL A 137 SHEET 7 AA 7 LEU A 248 TYR A 251 1 O LEU A 249 N ALA A 183 SHEET 1 BA 7 ALA B 53 VAL B 57 0 SHEET 2 BA 7 ARG B 31 ASP B 36 1 O VAL B 32 N VAL B 54 SHEET 3 BA 7 VAL B 7 THR B 11 1 O ALA B 8 N ALA B 33 SHEET 4 BA 7 THR B 82 ILE B 84 1 O THR B 82 N LEU B 9 SHEET 5 BA 7 SER B 136 THR B 140 1 O SER B 136 N LEU B 83 SHEET 6 BA 7 ARG B 178 PRO B 184 1 O ARG B 178 N VAL B 137 SHEET 7 BA 7 LEU B 248 TYR B 251 1 O LEU B 249 N ALA B 183
CISPEP 1 ALA A 174 PRO A 175 0 0.42 CISPEP 2 ALA B 174 PRO B 175 0 -1.66
CRYST1 75.735 75.735 178.947 90.00 90.00 90.00 P 43 21 2 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.013204 0.000000 0.000000 0.00000
SCALE2 0.000000 0.013204 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005588 0.00000