10 20 30 40 50 60 70 80 3ZU6 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 14-JUL-11 3ZU6
TITLE THE 3-DIMENSIONAL STRUCTURE OF MPGP FROM THERMUS THERMOPHILUS HB27, TITLE 2 IN COMPLEX WITH THE ALPHA-MANNOSYLGLYCERATE AND ORTHOPHOSPHATE TITLE 3 REACTION PRODUCTS.
COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANNOSYL-3-PHOSPHOGLYCERATE PHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MPGP; COMPND 5 EC: 3.1.3.70; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 262724; SOURCE 4 STRAIN: HB27; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PKK223-3
KEYWDS HYDROLASE, HALOALKANOID ACID DEHALOGENASE-LIKE PHOSPHATASE, HAD-LIKE KEYWDS 2 PHOSPHATASE
EXPDTA X-RAY DIFFRACTION
AUTHOR S.GONCALVES,N.BORGES,A.M.ESTEVES,H.SANTOS,P.M.MATIAS
REVDAT 2 09-NOV-11 3ZU6 1 JRNL REVDAT 1 19-OCT-11 3ZU6 0
JRNL AUTH S.GONCALVES,A.M.ESTEVES,H.SANTOS,N.BORGES,P.M.MATIAS JRNL TITL THE THREE-DIMENSIONAL STRUCTURE OF MANNOSYL-3- JRNL TITL 2 PHOSPHOGLYCERATE PHOSPHATASE FROM THERMUS THERMOPHILUS JRNL TITL 3 HB27: A NEW MEMBER OF THE HALOALKANOIC ACID DEHALOGENASE JRNL TITL 4 SUPERFAMILY. JRNL REF BIOCHEMISTRY V. 50 9551 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 21961705 JRNL DOI 10.1021/BI201171H
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.GONCALVES,A.M.ESTEVES,N.BORGES,H.SANTOS,P.M.MATIAS REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY ANALYSIS OF REMARK 1 TITL 2 MANNOSYL-3-PHOSPHOGLYCERATE PHOSPHATASE FROM THERMUS REMARK 1 TITL 3 THERMOPHILUS HB27. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 67 390 2011 REMARK 1 REFN ISSN 1744-3091 REMARK 1 PMID 21393850 REMARK 1 DOI 10.1107/S1744309111002843
REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.900 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.852 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.35 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.73 REMARK 3 NUMBER OF REFLECTIONS : 38647 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.1851 REMARK 3 R VALUE (WORKING SET) : 0.1823 REMARK 3 FREE R VALUE : 0.2376 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 1950 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 20.8535 - 4.0842 0.82 3203 168 0.1556 0.1887 REMARK 3 2 4.0842 - 3.2457 0.97 3752 171 0.1534 0.1969 REMARK 3 3 3.2457 - 2.8366 0.98 3762 203 0.1763 0.2441 REMARK 3 4 2.8366 - 2.5777 0.98 3792 211 0.1770 0.2465 REMARK 3 5 2.5777 - 2.3933 0.98 3756 198 0.1815 0.2520 REMARK 3 6 2.3933 - 2.2523 0.99 3770 174 0.1893 0.2916 REMARK 3 7 2.2523 - 2.1396 0.99 3757 215 0.2209 0.2537 REMARK 3 8 2.1396 - 2.0466 0.99 3782 212 0.2360 0.3123 REMARK 3 9 2.0466 - 1.9679 0.99 3760 205 0.2624 0.3184 REMARK 3 10 1.9679 - 1.9000 0.89 3363 193 0.2934 0.3166 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.396 REMARK 3 B_SOL : 83.492 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.24 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.68 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.04 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.2932 REMARK 3 B22 (A**2) : 0.3953 REMARK 3 B33 (A**2) : -4.6885 REMARK 3 B12 (A**2) : 0.0000 REMARK 3 B13 (A**2) : 0.9552 REMARK 3 B23 (A**2) : 0.0000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4005 REMARK 3 ANGLE : 1.114 5446 REMARK 3 CHIRALITY : 0.072 593 REMARK 3 PLANARITY : 0.005 722 REMARK 3 DIHEDRAL : 13.532 1524 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:41) REMARK 3 ORIGIN FOR THE GROUP (A): 37.1160 52.1106 -15.8123 REMARK 3 T TENSOR REMARK 3 T11: 0.5789 T22: 0.3801 REMARK 3 T33: 0.7654 T12: 0.0456 REMARK 3 T13: -0.1678 T23: -0.0253 REMARK 3 L TENSOR REMARK 3 L11: 0.8706 L22: 0.7693 REMARK 3 L33: 0.8452 L12: 0.0272 REMARK 3 L13: 0.8007 L23: 0.3156 REMARK 3 S TENSOR REMARK 3 S11: 0.3403 S12: 0.3011 S13: -1.5168 REMARK 3 S21: -0.4195 S22: 0.1327 S23: 0.1367 REMARK 3 S31: 1.3293 S32: 0.2284 S33: 0.0012 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 42:142) REMARK 3 ORIGIN FOR THE GROUP (A): 34.9443 62.9402 2.0356 REMARK 3 T TENSOR REMARK 3 T11: 0.0877 T22: 0.1866 REMARK 3 T33: 0.2046 T12: 0.0193 REMARK 3 T13: 0.0230 T23: 0.0763 REMARK 3 L TENSOR REMARK 3 L11: 1.3735 L22: 1.5538 REMARK 3 L33: 3.3095 L12: 0.9190 REMARK 3 L13: -0.9648 L23: -0.3990 REMARK 3 S TENSOR REMARK 3 S11: 0.0059 S12: -0.2005 S13: -0.0363 REMARK 3 S21: 0.1689 S22: -0.0963 S23: -0.1488 REMARK 3 S31: 0.1016 S32: 0.1721 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 143:175) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4744 64.5601 2.5604 REMARK 3 T TENSOR REMARK 3 T11: 0.2226 T22: 0.4353 REMARK 3 T33: 0.3713 T12: 0.0053 REMARK 3 T13: -0.0503 T23: 0.0980 REMARK 3 L TENSOR REMARK 3 L11: 1.2989 L22: 0.7102 REMARK 3 L33: 2.0149 L12: -0.0082 REMARK 3 L13: 0.9684 L23: -0.2840 REMARK 3 S TENSOR REMARK 3 S11: 0.2474 S12: 0.1064 S13: -0.2634 REMARK 3 S21: -0.5083 S22: 0.0736 S23: 0.3845 REMARK 3 S31: 0.4872 S32: -1.0096 S33: -0.0021 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 176:250) REMARK 3 ORIGIN FOR THE GROUP (A): 29.5162 59.2838 -20.1857 REMARK 3 T TENSOR REMARK 3 T11: 0.3487 T22: 0.2236 REMARK 3 T33: 0.5286 T12: -0.0521 REMARK 3 T13: -0.2268 T23: 0.0492 REMARK 3 L TENSOR REMARK 3 L11: 2.3784 L22: 2.9547 REMARK 3 L33: 3.0223 L12: -2.2075 REMARK 3 L13: 1.7459 L23: -0.7069 REMARK 3 S TENSOR REMARK 3 S11: 0.5432 S12: 0.2874 S13: -0.9396 REMARK 3 S21: -0.4544 S22: 0.1946 S23: 0.7021 REMARK 3 S31: 0.7391 S32: 0.0347 S33: -0.0004 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 1:34) REMARK 3 ORIGIN FOR THE GROUP (A): 16.9309 59.1663 47.0148 REMARK 3 T TENSOR REMARK 3 T11: 0.6718 T22: 0.3136 REMARK 3 T33: 0.4196 T12: 0.0280 REMARK 3 T13: -0.0034 T23: -0.0802 REMARK 3 L TENSOR REMARK 3 L11: 0.9356 L22: 0.6321 REMARK 3 L33: 0.4215 L12: -0.1177 REMARK 3 L13: 0.4371 L23: 0.1168 REMARK 3 S TENSOR REMARK 3 S11: 0.0956 S12: -0.1370 S13: 0.7247 REMARK 3 S21: 0.3580 S22: -0.1002 S23: -0.5340 REMARK 3 S31: -1.1377 S32: -0.1935 S33: -0.0002 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 35:143) REMARK 3 ORIGIN FOR THE GROUP (A): 25.5549 48.4928 31.1132 REMARK 3 T TENSOR REMARK 3 T11: 0.2140 T22: 0.2337 REMARK 3 T33: 0.1880 T12: 0.0281 REMARK 3 T13: -0.0296 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 1.3557 L22: 2.8157 REMARK 3 L33: 3.0263 L12: 0.6607 REMARK 3 L13: -0.4906 L23: 0.0732 REMARK 3 S TENSOR REMARK 3 S11: -0.0821 S12: -0.0460 S13: -0.0024 REMARK 3 S21: 0.2819 S22: 0.0098 S23: -0.1430 REMARK 3 S31: -0.2236 S32: 0.3798 S33: -0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 144:175) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6433 47.0283 21.5138 REMARK 3 T TENSOR REMARK 3 T11: 0.2427 T22: 0.2075 REMARK 3 T33: 0.2880 T12: 0.0305 REMARK 3 T13: 0.0194 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 1.6720 L22: 1.4407 REMARK 3 L33: 1.2764 L12: 0.6075 REMARK 3 L13: -0.0080 L23: 1.2467 REMARK 3 S TENSOR REMARK 3 S11: -0.0787 S12: 0.0241 S13: 0.0630 REMARK 3 S21: 0.2437 S22: 0.1529 S23: 0.6324 REMARK 3 S31: -0.3604 S32: -0.3960 S33: -0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 176:252) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8037 50.4615 45.6462 REMARK 3 T TENSOR REMARK 3 T11: 0.4562 T22: 0.3435 REMARK 3 T33: 0.2067 T12: -0.0163 REMARK 3 T13: 0.0765 T23: -0.0397 REMARK 3 L TENSOR REMARK 3 L11: 1.8936 L22: 2.2032 REMARK 3 L33: 2.0315 L12: 0.1876 REMARK 3 L13: 0.2246 L23: 0.4635 REMARK 3 S TENSOR REMARK 3 S11: 0.0422 S12: -0.1950 S13: 0.1326 REMARK 3 S21: 0.3168 S22: -0.1644 S23: 0.3072 REMARK 3 S31: 0.2240 S32: -0.5648 S33: -0.0003 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 3ZU6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-JUL-11. REMARK 100 THE PDBE ID CODE IS EBI-49015.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.25200 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : BENT CYLINDRICAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 114899 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.90 REMARK 200 RESOLUTION RANGE LOW (A) : 50.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 2.9 REMARK 200 R MERGE (I) : 0.13 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.90 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.6 REMARK 200 R MERGE FOR SHELL (I) : 0.73 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.93 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3ZTY REMARK 200 REMARK 200 REMARK: NONE
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.8 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.3 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SEE REMARK 1 REFERENCE ABOVE.
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.26500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 251 REMARK 465 SER A 252 REMARK 465 ARG A 253 REMARK 465 ARG A 254 REMARK 465 GLY A 255 REMARK 465 GLY A 256 REMARK 465 SER A 257 REMARK 465 GLY A 258 REMARK 465 PRO A 259 REMARK 465 ARG B 253 REMARK 465 ARG B 254 REMARK 465 GLY B 255 REMARK 465 GLY B 256 REMARK 465 SER B 257 REMARK 465 GLY B 258 REMARK 465 PRO B 259
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 15 NE CZ NH1 NH2 REMARK 470 GLU A 17 CD OE1 OE2 REMARK 470 ARG B 75 CZ NH1 NH2 REMARK 470 ARG B 90 CZ NH1 NH2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 10 -72.36 -115.11 REMARK 500 GLU A 17 -149.10 -121.97 REMARK 500 SER A 203 173.07 62.12 REMARK 500 LEU A 247 -62.72 -103.79 REMARK 500 LEU B 7 -64.49 -95.13 REMARK 500 THR B 10 -70.71 -114.73 REMARK 500 ASP B 13 -168.15 -77.50 REMARK 500 TYR B 137 -44.53 -132.04 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B1253 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B1254 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2M8 B1255
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZTY RELATED DB: PDB REMARK 900 THE 3-DIMENSIONAL STRUCTURE OF THE GADOLINIUM DERIVATIVE REMARK 900 OF MPGP, THE MANNOSYL-3-PHOSPHOGLYCERATE PHOSPHATASE REMARK 900 FROM THERMUS THERMOPHILUS HB27 REMARK 900 RELATED ID: 3ZTW RELATED DB: PDB REMARK 900 THE 3-DIMENSIONAL STRUCTURE OF APO-MPGP, THE MANNOSYL REMARK 900 -3-PHOSPHOGLYCERATE PHOSPHATASE FROM THERMUS THERMOPHILUS REMARK 900 HB27 IN ITS APO-FORM
DBREF 3ZU6 A 1 259 UNP Q72K29 Q72K29_THET2 1 259 DBREF 3ZU6 B 1 259 UNP Q72K29 Q72K29_THET2 1 259
SEQRES 1 A 259 MET ILE VAL PHE THR ASP LEU ASP GLY THR LEU LEU ASP SEQRES 2 A 259 GLU ARG GLY GLU LEU GLY PRO ALA ARG GLU ALA LEU GLU SEQRES 3 A 259 ARG LEU ARG ALA LEU GLY VAL PRO VAL VAL PRO VAL THR SEQRES 4 A 259 ALA LYS THR ARG LYS GLU VAL GLU ALA LEU GLY LEU GLU SEQRES 5 A 259 PRO PRO PHE ILE VAL GLU ASN GLY GLY GLY LEU TYR LEU SEQRES 6 A 259 PRO ARG ASP TRP PRO VAL ARG ALA GLY ARG PRO LYS GLY SEQRES 7 A 259 GLY TYR ARG VAL VAL SER LEU ALA TRP PRO TYR ARG LYS SEQRES 8 A 259 VAL ARG ALA ARG LEU ARG GLU ALA GLU ALA LEU ALA GLY SEQRES 9 A 259 ARG PRO ILE LEU GLY TYR GLY ASP LEU THR ALA GLU ALA SEQRES 10 A 259 VAL ALA ARG LEU THR GLY LEU SER ARG GLU ALA ALA ARG SEQRES 11 A 259 ARG ALA LYS ALA ARG GLU TYR ASP GLU THR LEU VAL LEU SEQRES 12 A 259 CYS PRO GLU GLU VAL GLU ALA VAL LEU GLU ALA LEU GLU SEQRES 13 A 259 ALA VAL GLY LEU GLU TRP THR HIS GLY GLY ARG PHE TYR SEQRES 14 A 259 HIS ALA ALA LYS GLY ALA ASP LYS GLY ARG ALA VAL ALA SEQRES 15 A 259 ARG LEU ARG ALA LEU TRP PRO ASP PRO GLU GLU ALA ARG SEQRES 16 A 259 PHE ALA VAL GLY LEU GLY ASP SER LEU ASN ASP LEU PRO SEQRES 17 A 259 LEU PHE ARG ALA VAL ASP LEU ALA VAL TYR VAL GLY ARG SEQRES 18 A 259 GLY ASP PRO PRO GLU GLY VAL LEU ALA THR PRO ALA PRO SEQRES 19 A 259 GLY PRO GLU GLY PHE ARG TYR ALA VAL GLU ARG TYR LEU SEQRES 20 A 259 LEU PRO ARG LEU SER ARG ARG GLY GLY SER GLY PRO SEQRES 1 B 259 MET ILE VAL PHE THR ASP LEU ASP GLY THR LEU LEU ASP SEQRES 2 B 259 GLU ARG GLY GLU LEU GLY PRO ALA ARG GLU ALA LEU GLU SEQRES 3 B 259 ARG LEU ARG ALA LEU GLY VAL PRO VAL VAL PRO VAL THR SEQRES 4 B 259 ALA LYS THR ARG LYS GLU VAL GLU ALA LEU GLY LEU GLU SEQRES 5 B 259 PRO PRO PHE ILE VAL GLU ASN GLY GLY GLY LEU TYR LEU SEQRES 6 B 259 PRO ARG ASP TRP PRO VAL ARG ALA GLY ARG PRO LYS GLY SEQRES 7 B 259 GLY TYR ARG VAL VAL SER LEU ALA TRP PRO TYR ARG LYS SEQRES 8 B 259 VAL ARG ALA ARG LEU ARG GLU ALA GLU ALA LEU ALA GLY SEQRES 9 B 259 ARG PRO ILE LEU GLY TYR GLY ASP LEU THR ALA GLU ALA SEQRES 10 B 259 VAL ALA ARG LEU THR GLY LEU SER ARG GLU ALA ALA ARG SEQRES 11 B 259 ARG ALA LYS ALA ARG GLU TYR ASP GLU THR LEU VAL LEU SEQRES 12 B 259 CYS PRO GLU GLU VAL GLU ALA VAL LEU GLU ALA LEU GLU SEQRES 13 B 259 ALA VAL GLY LEU GLU TRP THR HIS GLY GLY ARG PHE TYR SEQRES 14 B 259 HIS ALA ALA LYS GLY ALA ASP LYS GLY ARG ALA VAL ALA SEQRES 15 B 259 ARG LEU ARG ALA LEU TRP PRO ASP PRO GLU GLU ALA ARG SEQRES 16 B 259 PHE ALA VAL GLY LEU GLY ASP SER LEU ASN ASP LEU PRO SEQRES 17 B 259 LEU PHE ARG ALA VAL ASP LEU ALA VAL TYR VAL GLY ARG SEQRES 18 B 259 GLY ASP PRO PRO GLU GLY VAL LEU ALA THR PRO ALA PRO SEQRES 19 B 259 GLY PRO GLU GLY PHE ARG TYR ALA VAL GLU ARG TYR LEU SEQRES 20 B 259 LEU PRO ARG LEU SER ARG ARG GLY GLY SER GLY PRO
HET MG B1253 1 HET PO4 B1254 5 HET 2M8 B1255 18
HETNAM MG MAGNESIUM ION HETNAM PO4 PHOSPHATE ION HETNAM 2M8 2-O-ALPHA-MANNOSYL-D-GLYCERATE
FORMUL 3 MG MG 2+ FORMUL 4 PO4 O4 P 3- FORMUL 5 2M8 C9 H16 O9 FORMUL 6 HOH *323(H2 O)
HELIX 1 1 PRO A 20 LEU A 31 1 12 HELIX 2 2 THR A 42 LEU A 49 1 8 HELIX 3 3 GLU A 58 GLY A 60 5 3 HELIX 4 4 PRO A 88 GLY A 104 1 17 HELIX 5 5 THR A 114 GLY A 123 1 10 HELIX 6 6 SER A 125 ALA A 134 1 10 HELIX 7 7 GLU A 147 VAL A 158 1 12 HELIX 8 8 ASP A 176 LEU A 187 1 12 HELIX 9 9 ASP A 190 ARG A 195 1 6 HELIX 10 10 SER A 203 ASN A 205 5 3 HELIX 11 11 ASP A 206 VAL A 213 1 8 HELIX 12 12 GLY A 235 LEU A 247 1 13 HELIX 13 13 LEU B 18 PRO B 20 5 3 HELIX 14 14 ALA B 21 LEU B 31 1 11 HELIX 15 15 THR B 42 LEU B 49 1 8 HELIX 16 16 GLU B 58 GLY B 60 5 3 HELIX 17 17 PRO B 88 GLY B 104 1 17 HELIX 18 18 TYR B 110 ASP B 112 5 3 HELIX 19 19 THR B 114 GLY B 123 1 10 HELIX 20 20 SER B 125 ALA B 134 1 10 HELIX 21 21 CYS B 144 GLU B 146 5 3 HELIX 22 22 GLU B 147 VAL B 158 1 12 HELIX 23 23 ASP B 176 LEU B 187 1 12 HELIX 24 24 SER B 203 ASN B 205 5 3 HELIX 25 25 ASP B 206 VAL B 213 1 8 HELIX 26 26 PRO B 234 TYR B 246 1 13 HELIX 27 27 TYR B 246 SER B 252 1 7
SHEET 1 AA 5 VAL A 35 PRO A 37 0 SHEET 2 AA 5 ILE A 2 THR A 5 1 O VAL A 3 N VAL A 36 SHEET 3 AA 5 ALA A 197 GLY A 201 1 O VAL A 198 N PHE A 4 SHEET 4 AA 5 LEU A 215 TYR A 218 1 O LEU A 215 N GLY A 199 SHEET 5 AA 5 LEU A 229 ALA A 230 1 O LEU A 229 N TYR A 218 SHEET 1 AB 4 PHE A 55 VAL A 57 0 SHEET 2 AB 4 GLY A 62 PRO A 66 -1 O GLY A 62 N VAL A 57 SHEET 3 AB 4 TYR A 80 SER A 84 -1 O ARG A 81 N LEU A 65 SHEET 4 AB 4 ARG A 75 LYS A 77 -1 O ARG A 75 N VAL A 82 SHEET 1 AC 4 LEU A 108 GLY A 109 0 SHEET 2 AC 4 GLU A 139 VAL A 142 -1 O VAL A 142 N LEU A 108 SHEET 3 AC 4 TYR A 169 ALA A 172 -1 O TYR A 169 N LEU A 141 SHEET 4 AC 4 GLU A 161 HIS A 164 -1 O GLU A 161 N ALA A 172 SHEET 1 BA 5 VAL B 35 PRO B 37 0 SHEET 2 BA 5 ILE B 2 THR B 5 1 O VAL B 3 N VAL B 36 SHEET 3 BA 5 ALA B 197 GLY B 201 1 O VAL B 198 N PHE B 4 SHEET 4 BA 5 LEU B 215 TYR B 218 1 O LEU B 215 N GLY B 199 SHEET 5 BA 5 LEU B 229 ALA B 230 1 O LEU B 229 N TYR B 218 SHEET 1 BB 4 PHE B 55 VAL B 57 0 SHEET 2 BB 4 GLY B 62 PRO B 66 -1 O GLY B 62 N VAL B 57 SHEET 3 BB 4 TYR B 80 SER B 84 -1 O ARG B 81 N LEU B 65 SHEET 4 BB 4 ARG B 75 LYS B 77 -1 O ARG B 75 N VAL B 82 SHEET 1 BC 3 GLU B 139 THR B 140 0 SHEET 2 BC 3 TYR B 169 ALA B 172 -1 O ALA B 171 N GLU B 139 SHEET 3 BC 3 GLU B 161 HIS B 164 -1 O GLU B 161 N ALA B 172
LINK MG MG B1253 O2 PO4 B1254 1555 1555 1.92 LINK MG MG B1253 OD1 ASP B 6 1555 1555 2.61 LINK MG MG B1253 OD2 ASP B 6 1555 1555 2.66 LINK MG MG B1253 O ASP B 8 1555 1555 2.28 LINK MG MG B1253 OD1 ASP B 202 1555 1555 2.39 LINK MG MG B1253 O HOH B2004 1555 1555 2.44 LINK MG MG B1253 O HOH B2006 1555 1555 2.42
CISPEP 1 PRO A 53 PRO A 54 0 3.66 CISPEP 2 PRO B 53 PRO B 54 0 6.05
SITE 1 AC1 6 ASP B 6 ASP B 8 ASP B 202 PO4 B1254 SITE 2 AC1 6 HOH B2004 HOH B2006 SITE 1 AC2 9 ASP B 6 LEU B 7 ASP B 8 THR B 39 SITE 2 AC2 9 ALA B 40 LYS B 177 ASN B 205 MG B1253 SITE 3 AC2 9 2M8 B1255 SITE 1 AC3 12 ASP B 8 ALA B 40 LYS B 41 GLU B 45 SITE 2 AC3 12 TYR B 110 ARG B 135 THR B 140 GLY B 165 SITE 3 AC3 12 ARG B 167 PHE B 168 HIS B 170 PO4 B1254
CRYST1 39.930 70.530 92.630 90.00 95.70 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.025044 0.000000 0.002500 0.00000
SCALE2 0.000000 0.014178 0.000000 0.00000
SCALE3 0.000000 0.000000 0.010849 0.00000