10 20 30 40 50 60 70 80 3ZRE - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 15-JUN-11 3ZRE
TITLE REDUCED THIOL PEROXIDASE (TPX) FROM YERSINIA PSEUDOTUBERCULOSIS
COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL PEROXIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.11.1.15; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PSEUDOTUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 502800; SOURCE 4 STRAIN: YPIII; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-151
KEYWDS OXIDOREDUCTASE, 2CYS PEROXIREDOXIN, THIOREDOXIN-FOLD, ROS PROTECTION
EXPDTA X-RAY DIFFRACTION
AUTHOR M.GABRIELSEN,C.E.ZETTERSTROM,D.WANG,M.ELOFSSON,A.J.ROE
REVDAT 1 14-MAR-12 3ZRE 0
JRNL AUTH M.GABRIELSEN,K.S.H.BECKHAM,V.A.FEHER,C.E.ZETTERSTROM,D.WANG, JRNL AUTH 2 S.MULLER,M.ELOFSSON,R.E.AMARO,O.BYRON,A.J.ROE JRNL TITL STRUCTURAL CHARACTERISATION OF TPX FROM YERSINIA JRNL TITL 2 PSEUDOTUBERCULOSIS REVEALS INSIGHTS INTO THE BINDING OF JRNL TITL 3 SALICYLIDENE ACYLHYDRAZIDE COMPOUNDS. JRNL REF PLOS ONE V. 7 32217 2012 JRNL REFN ISSN 1932-6203 JRNL PMID 22384182 JRNL DOI 10.1371/JOURNAL.PONE.0032217
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.WANG,C.E.ZETTERSTROM,M.GABRIELSEN,K.S.H.BECKHAM,J.J.TREE, REMARK 1 AUTH 2 S.E.MACDONALD,O.BYRON,T.J.MITCHELL,D.L.GALLY,P.HERZYK, REMARK 1 AUTH 3 A.MAHAJAN,H.UVELL,R.BURCHMORE,B.O.SMITH,M.ELOFSSON,A.J.ROE REMARK 1 TITL IDENTIFICATION OF BACTERIAL TARGET PROTEINS FOR THE REMARK 1 TITL 2 SALICYLIDENE ACYLHYDRAZIDE CLASS OF VIRULENCE- BLOCKING REMARK 1 TITL 3 COMPOUNDS. REMARK 1 REF J.BIOL.CHEM. V. 286 29922 2011 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 21724850 REMARK 1 DOI 10.1074/JBC.M111.233858
REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 99.92 REMARK 3 NUMBER OF REFLECTIONS : 8251 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.23535 REMARK 3 R VALUE (WORKING SET) : 0.23343 REMARK 3 FREE R VALUE : 0.27337 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.8 REMARK 3 FREE R VALUE TEST SET COUNT : 412 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.350 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.411 REMARK 3 REFLECTION IN BIN (WORKING SET) : 607 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.289 REMARK 3 BIN FREE R VALUE SET COUNT : 33 REMARK 3 BIN FREE R VALUE : 0.387 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1221 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 12 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.8 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.604 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.88 REMARK 3 B22 (A**2) : 1.88 REMARK 3 B33 (A**2) : -2.82 REMARK 3 B12 (A**2) : 0.94 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.330 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.249 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.227 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.415 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1207 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1646 ; 1.995 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 164 ; 8.159 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 44 ;40.673 ;25.227 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 185 ;20.163 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;23.186 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 206 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 896 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 817 ; 0.964 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1307 ; 1.712 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 390 ; 2.235 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 339 ; 3.352 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY.
REMARK 4 REMARK 4 3ZRE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-JUN-11. REMARK 100 THE PDBE ID CODE IS EBI-48481.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD (Q315R) REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8685 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.35 REMARK 200 RESOLUTION RANGE LOW (A) : 47.15 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.2 REMARK 200 R MERGE (I) : 0.08 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.60 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.4 REMARK 200 R MERGE FOR SHELL (I) : 0.73 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.20 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2XPD REMARK 200 REMARK 200 REMARK: NONE
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM MALONATE PH 5, 12% REMARK 280 PEG 3350.
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.76133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.52267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.76133 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.52267 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2006 LIES ON A SPECIAL POSITION.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -32 REMARK 465 HIS A -31 REMARK 465 HIS A -30 REMARK 465 HIS A -29 REMARK 465 HIS A -28 REMARK 465 HIS A -27 REMARK 465 HIS A -26 REMARK 465 GLY A -25 REMARK 465 LYS A -24 REMARK 465 PRO A -23 REMARK 465 ILE A -22 REMARK 465 PRO A -21 REMARK 465 ASN A -20 REMARK 465 PRO A -19 REMARK 465 LEU A -18 REMARK 465 LEU A -17 REMARK 465 GLY A -16 REMARK 465 LEU A -15 REMARK 465 ASP A -14 REMARK 465 SER A -13 REMARK 465 THR A -12 REMARK 465 GLU A -11 REMARK 465 ASN A -10 REMARK 465 LEU A -9 REMARK 465 TYR A -8 REMARK 465 PHE A -7 REMARK 465 GLN A -6 REMARK 465 GLY A -5 REMARK 465 ILE A -4 REMARK 465 ASP A -3 REMARK 465 PRO A -2 REMARK 465 PHE A -1 REMARK 465 ALA A 165 REMARK 465 LEU A 166 REMARK 465 LYS A 167
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 7 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 13 OG REMARK 470 LYS A 17 CG CD CE NZ REMARK 470 LYS A 26 CG CD CE NZ REMARK 470 GLN A 70 CG CD OE1 NE2 REMARK 470 GLU A 74 CG CD OE1 OE2 REMARK 470 GLN A 141 CD OE1 NE2 REMARK 470 GLU A 152 CG CD OE1 OE2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 156 OH TYR A 159 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 7 CB PHE A 7 CG -0.249 REMARK 500 SER A 13 CB SER A 13 OG -0.289 REMARK 500 GLN A 70 CB GLN A 70 CG -0.291 REMARK 500 GLU A 74 CB GLU A 74 CG -0.655 REMARK 500 SER A 85 CB SER A 85 OG 0.101 REMARK 500 GLN A 141 CG GLN A 141 CD 1.108 REMARK 500 GLU A 152 CB GLU A 152 CG 0.135 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 7 CA - CB - CG ANGL. DEV. = 22.5 DEGREES REMARK 500 PHE A 7 CB - CG - CD1 ANGL. DEV. = -7.0 DEGREES REMARK 500 PHE A 7 CB - CG - CD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 SER A 85 N - CA - CB ANGL. DEV. = -10.3 DEGREES REMARK 500 ARG A 93 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 GLN A 141 CB - CG - CD ANGL. DEV. = -23.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 8 -113.15 65.42 REMARK 500 ASN A 10 127.95 124.88 REMARK 500 ALA A 44 126.82 -39.81 REMARK 500 ILE A 56 154.82 -49.91 REMARK 500 ASP A 57 -4.85 86.87 REMARK 500 GLU A 74 32.89 -73.63 REMARK 500 ALA A 161 61.03 86.43 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZRD RELATED DB: PDB REMARK 900 OXIDISED THIOL PEROXIDASE (TPX) FROM YERSINIA REMARK 900 PSEUDOTUBERCULOSIS REMARK 900 RELATED ID: 2XPE RELATED DB: PDB REMARK 900 OXIDISED THIOL PEROXIDASE (TPX) FROM YERSINIA REMARK 900 PSEUDOTUBERCULOSIS REMARK 900 RELATED ID: 2YJH RELATED DB: PDB REMARK 900 THIOL PEROXIDASE FROM YERSINIA PSUEDOTUBERCULOSIS, INACTIVE REMARK 900 MUTANT C61S REMARK 900 RELATED ID: 2XPD RELATED DB: PDB REMARK 900 REDUCED THIOL PEROXIDASE (TPX) FROM YERSINIA REMARK 900 PSEUDOTUBERCULOSIS
REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE ENCODES HISTIDINE TAG AND TEV PROTEASE CLEAVAGE REMARK 999 SITE.
DBREF 3ZRE A 1 167 UNP Q66A71 Q66A71_YERPS 1 167
SEQADV 3ZRE MET A -32 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRE HIS A -31 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRE HIS A -30 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRE HIS A -29 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRE HIS A -28 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRE HIS A -27 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRE HIS A -26 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRE GLY A -25 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRE LYS A -24 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRE PRO A -23 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRE ILE A -22 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRE PRO A -21 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRE ASN A -20 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRE PRO A -19 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRE LEU A -18 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRE LEU A -17 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRE GLY A -16 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRE LEU A -15 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRE ASP A -14 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRE SER A -13 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRE THR A -12 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRE GLU A -11 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRE ASN A -10 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRE LEU A -9 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRE TYR A -8 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRE PHE A -7 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRE GLN A -6 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRE GLY A -5 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRE ILE A -4 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRE ASP A -3 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRE PRO A -2 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRE PHE A -1 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRE THR A 0 UNP Q66A71 EXPRESSION TAG
SEQRES 1 A 200 MET HIS HIS HIS HIS HIS HIS GLY LYS PRO ILE PRO ASN SEQRES 2 A 200 PRO LEU LEU GLY LEU ASP SER THR GLU ASN LEU TYR PHE SEQRES 3 A 200 GLN GLY ILE ASP PRO PHE THR MET THR GLN THR VAL HIS SEQRES 4 A 200 PHE GLN GLY ASN PRO VAL SER VAL ALA GLY LYS LEU PRO SEQRES 5 A 200 GLN ILE GLY ASP LYS ALA LYS ASP PHE THR LEU VAL ALA SEQRES 6 A 200 LYS ASP LEU SER ASP VAL ALA LEU SER SER PHE ALA GLY SEQRES 7 A 200 LYS ARG LYS VAL LEU ASN ILE PHE PRO SER ILE ASP THR SEQRES 8 A 200 GLY VAL CYS ALA ALA SER VAL ARG LYS PHE ASN GLN LEU SEQRES 9 A 200 ALA GLY GLU LEU GLU ASN THR VAL VAL LEU CYS ILE SER SEQRES 10 A 200 SER ASP LEU PRO PHE ALA GLN SER ARG PHE CYS GLY ALA SEQRES 11 A 200 GLU GLY LEU SER ASN VAL ILE THR LEU SER THR LEU ARG SEQRES 12 A 200 GLY ALA ASP PHE LYS GLN ALA TYR GLY VAL ALA ILE THR SEQRES 13 A 200 GLU GLY PRO LEU ALA GLY LEU THR ALA ARG ALA VAL VAL SEQRES 14 A 200 VAL LEU ASP GLY GLN ASP ASN VAL ILE TYR SER GLU LEU SEQRES 15 A 200 VAL ASN GLU ILE THR THR GLU PRO ASN TYR ASP ALA ALA SEQRES 16 A 200 LEU ALA ALA LEU LYS
FORMUL 2 HOH *12(H2 O)
HELIX 1 1 SER A 41 ALA A 44 5 4 HELIX 2 2 THR A 58 ALA A 72 1 15 HELIX 3 3 LEU A 87 GLU A 98 1 12 HELIX 4 4 ASP A 113 TYR A 118 1 6
SHEET 1 AA 2 THR A 2 HIS A 6 0 SHEET 2 AA 2 PRO A 11 ALA A 15 -1 O VAL A 12 N VAL A 5 SHEET 1 AB 2 THR A 29 VAL A 31 0 SHEET 2 AB 2 ASP A 37 ALA A 39 -1 O VAL A 38 N LEU A 30 SHEET 1 AC 5 ILE A 104 SER A 107 0 SHEET 2 AC 5 THR A 78 SER A 84 1 O VAL A 80 N ILE A 104 SHEET 3 AC 5 ARG A 47 PHE A 53 1 O ARG A 47 N VAL A 79 SHEET 4 AC 5 ALA A 134 LEU A 138 -1 O ALA A 134 N ILE A 52 SHEET 5 AC 5 VAL A 144 LEU A 149 -1 N ILE A 145 O VAL A 137
CISPEP 1 ASP A 160 ALA A 161 0 -2.10 CISPEP 2 ALA A 161 ALA A 162 0 -5.58
CRYST1 65.008 65.008 86.284 90.00 90.00 120.00 P 64 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.015383 0.008881 0.000000 0.00000
SCALE2 0.000000 0.017762 0.000000 0.00000
SCALE3 0.000000 0.000000 0.011590 0.00000