10 20 30 40 50 60 70 80 3ZRD - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 15-JUN-11 3ZRD
TITLE OXIDISED THIOL PEROXIDASE (TPX) FROM YERSINIA PSEUDOTUBERCULOSIS
COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL PEROXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.11.1.15; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PSEUDOTUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 502800; SOURCE 4 STRAIN: YPIII; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-151
KEYWDS OXIDOREDUCTASE, 2CYS PEROXIREDOXIN, THIOREDOXIN-FOLD, ROS PROTECTION
EXPDTA X-RAY DIFFRACTION
AUTHOR M.GABRIELSEN,C.E.ZETTERSTROM,D.WANG,M.ELOFSSON,A.J.ROE
REVDAT 1 14-MAR-12 3ZRD 0
JRNL AUTH M.GABRIELSEN,K.S.H.BECKHAM,V.A.FEHER,C.E.ZETTERSTROM,D.WANG, JRNL AUTH 2 S.MULLER,M.ELOFSSON,R.E.AMARO,O.BYRON,A.J.ROE JRNL TITL STRUCTURAL CHARACTERISATION OF TPX FROM YERSINIA JRNL TITL 2 PSEUDOTUBERCULOSIS REVEALS INSIGHTS INTO THE BINDING OF JRNL TITL 3 SALICYLIDENE ACYLHYDRAZIDE COMPOUNDS. JRNL REF PLOS ONE V. 7 32217 2012 JRNL REFN ISSN 1932-6203 JRNL PMID 22384182 JRNL DOI 10.1371/JOURNAL.PONE.0032217
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.WANG,C.E.ZETTERSTROM,M.GABRIELSEN,K.S.H.BECKHAM,J.J.TREE, REMARK 1 AUTH 2 S.E.MACDONALD,O.BYRON,T.J.MITCHELL,D.L.GALLY,P.HERZYK, REMARK 1 AUTH 3 A.MAHAJAN,H.UVELL,R.BURCHMORE,B.O.SMITH,M.ELOFSSON,A.J.ROE REMARK 1 TITL IDENTIFICATION OF BACTERIAL TARGET PROTEINS FOR THE REMARK 1 TITL 2 SALICYLIDENE ACYLHYDRAZIDE CLASS OF VIRULENCE- BLOCKING REMARK 1 TITL 3 COMPOUNDS. REMARK 1 REF J.BIOL.CHEM. V. 286 29922 2011 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 21724850 REMARK 1 DOI 10.1074/JBC.M111.233858
REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.0 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.04 REMARK 3 NUMBER OF REFLECTIONS : 22213 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.1969 REMARK 3 R VALUE (WORKING SET) : 0.1951 REMARK 3 FREE R VALUE : 0.2313 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.04 REMARK 3 FREE R VALUE TEST SET COUNT : 1572 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 16 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.80 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.04 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2195 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2303 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2069 REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE : 0.2818 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.74 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 126 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2517 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 199 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.8535 REMARK 3 B22 (A**2) : -1.8198 REMARK 3 B33 (A**2) : -2.0337 REMARK 3 B12 (A**2) : 0.0000 REMARK 3 B13 (A**2) : 0.0000 REMARK 3 B23 (A**2) : 0.0000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.130 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.122 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.126 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.120 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.9508 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.9357 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2555 ; 2.00 ; HARMONIC REMARK 3 BOND ANGLES : 3475 ; 2.00 ; HARMONIC REMARK 3 TORSION ANGLES : 865 ; 2.00 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 68 ; 2.00 ; HARMONIC REMARK 3 GENERAL PLANES : 373 ; 5.00 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2555 ; 20.00 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 352 ; 5.00 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3199 ; 4.00 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.08 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.07 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.46 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -5.6391 6.2569 16.5948 REMARK 3 T TENSOR REMARK 3 T11: -0.0629 T22: -0.0430 REMARK 3 T33: -0.0792 T12: 0.0170 REMARK 3 T13: 0.0108 T23: 0.0157 REMARK 3 L TENSOR REMARK 3 L11: 3.2454 L22: 1.7440 REMARK 3 L33: 0.9530 L12: -0.7331 REMARK 3 L13: -0.5282 L23: 0.5359 REMARK 3 S TENSOR REMARK 3 S11: -0.0801 S12: -0.1895 S13: -0.1557 REMARK 3 S21: 0.0532 S22: 0.0537 S23: 0.0242 REMARK 3 S31: 0.0345 S32: 0.0292 S33: 0.0263 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 24.0072 -1.0086 8.1513 REMARK 3 T TENSOR REMARK 3 T11: -0.0770 T22: -0.1073 REMARK 3 T33: -0.0559 T12: 0.0102 REMARK 3 T13: 0.0559 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 4.9676 L22: 1.6240 REMARK 3 L33: 0.8916 L12: 1.1713 REMARK 3 L13: -0.5550 L23: -0.0402 REMARK 3 S TENSOR REMARK 3 S11: -0.2078 S12: 0.0241 S13: -0.2476 REMARK 3 S21: -0.2026 S22: 0.1518 S23: -0.2239 REMARK 3 S31: 0.0568 S32: -0.0076 S33: 0.0561 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 3ZRD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-NOV-11. REMARK 100 THE PDBE ID CODE IS EBI-48479.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28072 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.82 REMARK 200 RESOLUTION RANGE LOW (A) : 28.09 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.6 REMARK 200 R MERGE (I) : 0.04 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.10 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.1 REMARK 200 R MERGE FOR SHELL (I) : 0.28 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.20 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2XPE REMARK 200 REMARK 200 REMARK: NONE
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.2 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M TRIPOTASSIUM CITRATE, 20% REMARK 280 PEG 3350.
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.09000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.28000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.09000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.28000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -32 REMARK 465 HIS A -31 REMARK 465 HIS A -30 REMARK 465 HIS A -29 REMARK 465 HIS A -28 REMARK 465 HIS A -27 REMARK 465 HIS A -26 REMARK 465 GLY A -25 REMARK 465 LYS A -24 REMARK 465 PRO A -23 REMARK 465 ILE A -22 REMARK 465 PRO A -21 REMARK 465 ASN A -20 REMARK 465 PRO A -19 REMARK 465 LEU A -18 REMARK 465 LEU A -17 REMARK 465 GLY A -16 REMARK 465 LEU A -15 REMARK 465 ASP A -14 REMARK 465 SER A -13 REMARK 465 THR A -12 REMARK 465 GLU A -11 REMARK 465 ASN A -10 REMARK 465 LEU A -9 REMARK 465 TYR A -8 REMARK 465 PHE A -7 REMARK 465 MET B -32 REMARK 465 HIS B -31 REMARK 465 HIS B -30 REMARK 465 HIS B -29 REMARK 465 HIS B -28 REMARK 465 HIS B -27 REMARK 465 HIS B -26 REMARK 465 GLY B -25 REMARK 465 LYS B -24 REMARK 465 PRO B -23 REMARK 465 ILE B -22 REMARK 465 PRO B -21 REMARK 465 ASN B -20 REMARK 465 PRO B -19 REMARK 465 LEU B -18 REMARK 465 LEU B -17 REMARK 465 GLY B -16 REMARK 465 LEU B -15 REMARK 465 ASP B -14 REMARK 465 SER B -13 REMARK 465 THR B -12 REMARK 465 GLU B -11 REMARK 465 ASN B -10 REMARK 465 LEU B -9 REMARK 465 TYR B -8 REMARK 465 PHE B -7 REMARK 465 GLN B -6 REMARK 465 GLY B -5 REMARK 465 ILE B -4 REMARK 465 ASP B -3 REMARK 465 PRO B -2 REMARK 465 PHE B -1 REMARK 465 THR B 0 REMARK 465 MET B 1
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A -4 CG1 CG2 CD1 REMARK 470 LYS A 17 CE NZ REMARK 470 GLN A 141 CG CD OE1 NE2 REMARK 470 LYS A 167 CG CD CE NZ REMARK 470 LYS B 17 CG CD CE NZ REMARK 470 LYS B 24 CD CE NZ REMARK 470 LYS B 26 CG CD CE NZ REMARK 470 LYS B 33 CD CE NZ REMARK 470 LYS B 67 CD CE NZ REMARK 470 GLU B 124 CD OE1 OE2 REMARK 470 GLN B 141 CB CG CD OE1 NE2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS B 6 CB - CG - ND1 ANGL. DEV. = 8.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 93 30.29 -98.31 REMARK 500 ALA A 97 -31.34 -137.00 REMARK 500 ALA A 112 -6.28 -59.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ILE A 153 24.3 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZRE RELATED DB: PDB REMARK 900 REDUCED THIOL PEROXIDASE (TPX) FROM YERSINIA REMARK 900 PSEUDOTUBERCULOSIS REMARK 900 RELATED ID: 2YJH RELATED DB: PDB REMARK 900 THIOL PEROXIDASE FROM YERSINIA PSUEDOTUBERCULOSIS, INACTIVE REMARK 900 MUTANT C61S
REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE CONTAINS HISTIDINE TAG AND TEV PROTEASE CLEAVAGE REMARK 999 SITE.
DBREF 3ZRD A 1 167 UNP Q66A71 Q66A71_YERPS 1 167 DBREF 3ZRD B 1 167 UNP Q66A71 Q66A71_YERPS 1 167
SEQADV 3ZRD MET A -32 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD HIS A -31 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD HIS A -30 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD HIS A -29 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD HIS A -28 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD HIS A -27 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD HIS A -26 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD GLY A -25 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD LYS A -24 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD PRO A -23 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD ILE A -22 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD PRO A -21 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD ASN A -20 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD PRO A -19 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD LEU A -18 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD LEU A -17 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD GLY A -16 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD LEU A -15 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD ASP A -14 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD SER A -13 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD THR A -12 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD GLU A -11 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD ASN A -10 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD LEU A -9 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD TYR A -8 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD PHE A -7 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD GLN A -6 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD GLY A -5 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD ILE A -4 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD ASP A -3 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD PRO A -2 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD PHE A -1 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD THR A 0 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD MET B -32 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD HIS B -31 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD HIS B -30 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD HIS B -29 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD HIS B -28 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD HIS B -27 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD HIS B -26 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD GLY B -25 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD LYS B -24 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD PRO B -23 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD ILE B -22 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD PRO B -21 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD ASN B -20 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD PRO B -19 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD LEU B -18 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD LEU B -17 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD GLY B -16 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD LEU B -15 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD ASP B -14 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD SER B -13 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD THR B -12 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD GLU B -11 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD ASN B -10 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD LEU B -9 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD TYR B -8 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD PHE B -7 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD GLN B -6 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD GLY B -5 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD ILE B -4 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD ASP B -3 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD PRO B -2 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD PHE B -1 UNP Q66A71 EXPRESSION TAG SEQADV 3ZRD THR B 0 UNP Q66A71 EXPRESSION TAG
SEQRES 1 A 200 MET HIS HIS HIS HIS HIS HIS GLY LYS PRO ILE PRO ASN SEQRES 2 A 200 PRO LEU LEU GLY LEU ASP SER THR GLU ASN LEU TYR PHE SEQRES 3 A 200 GLN GLY ILE ASP PRO PHE THR MET THR GLN THR VAL HIS SEQRES 4 A 200 PHE GLN GLY ASN PRO VAL SER VAL ALA GLY LYS LEU PRO SEQRES 5 A 200 GLN ILE GLY ASP LYS ALA LYS ASP PHE THR LEU VAL ALA SEQRES 6 A 200 LYS ASP LEU SER ASP VAL ALA LEU SER SER PHE ALA GLY SEQRES 7 A 200 LYS ARG LYS VAL LEU ASN ILE PHE PRO SER ILE ASP THR SEQRES 8 A 200 GLY VAL CYS ALA ALA SER VAL ARG LYS PHE ASN GLN LEU SEQRES 9 A 200 ALA GLY GLU LEU GLU ASN THR VAL VAL LEU CYS ILE SER SEQRES 10 A 200 SER ASP LEU PRO PHE ALA GLN SER ARG PHE CYS GLY ALA SEQRES 11 A 200 GLU GLY LEU SER ASN VAL ILE THR LEU SER THR LEU ARG SEQRES 12 A 200 GLY ALA ASP PHE LYS GLN ALA TYR GLY VAL ALA ILE THR SEQRES 13 A 200 GLU GLY PRO LEU ALA GLY LEU THR ALA ARG ALA VAL VAL SEQRES 14 A 200 VAL LEU ASP GLY GLN ASP ASN VAL ILE TYR SER GLU LEU SEQRES 15 A 200 VAL ASN GLU ILE THR THR GLU PRO ASN TYR ASP ALA ALA SEQRES 16 A 200 LEU ALA ALA LEU LYS SEQRES 1 B 200 MET HIS HIS HIS HIS HIS HIS GLY LYS PRO ILE PRO ASN SEQRES 2 B 200 PRO LEU LEU GLY LEU ASP SER THR GLU ASN LEU TYR PHE SEQRES 3 B 200 GLN GLY ILE ASP PRO PHE THR MET THR GLN THR VAL HIS SEQRES 4 B 200 PHE GLN GLY ASN PRO VAL SER VAL ALA GLY LYS LEU PRO SEQRES 5 B 200 GLN ILE GLY ASP LYS ALA LYS ASP PHE THR LEU VAL ALA SEQRES 6 B 200 LYS ASP LEU SER ASP VAL ALA LEU SER SER PHE ALA GLY SEQRES 7 B 200 LYS ARG LYS VAL LEU ASN ILE PHE PRO SER ILE ASP THR SEQRES 8 B 200 GLY VAL CYS ALA ALA SER VAL ARG LYS PHE ASN GLN LEU SEQRES 9 B 200 ALA GLY GLU LEU GLU ASN THR VAL VAL LEU CYS ILE SER SEQRES 10 B 200 SER ASP LEU PRO PHE ALA GLN SER ARG PHE CYS GLY ALA SEQRES 11 B 200 GLU GLY LEU SER ASN VAL ILE THR LEU SER THR LEU ARG SEQRES 12 B 200 GLY ALA ASP PHE LYS GLN ALA TYR GLY VAL ALA ILE THR SEQRES 13 B 200 GLU GLY PRO LEU ALA GLY LEU THR ALA ARG ALA VAL VAL SEQRES 14 B 200 VAL LEU ASP GLY GLN ASP ASN VAL ILE TYR SER GLU LEU SEQRES 15 B 200 VAL ASN GLU ILE THR THR GLU PRO ASN TYR ASP ALA ALA SEQRES 16 B 200 LEU ALA ALA LEU LYS
FORMUL 3 HOH *199(H2 O)
HELIX 1 1 SER A 41 ALA A 44 5 4 HELIX 2 2 ALA A 62 GLU A 74 1 13 HELIX 3 3 LEU A 87 SER A 92 1 6 HELIX 4 4 ALA A 112 TYR A 118 1 7 HELIX 5 5 ASN A 158 LYS A 167 1 10 HELIX 6 6 SER B 41 ALA B 44 5 4 HELIX 7 7 ALA B 62 LEU B 75 1 14 HELIX 8 8 LEU B 87 SER B 92 1 6 HELIX 9 9 ASP B 113 TYR B 118 1 6 HELIX 10 10 ASN B 158 LYS B 167 1 10
SHEET 1 AA 3 THR A 4 PHE A 7 0 SHEET 2 AA 3 ASN A 10 ALA A 15 -1 O ASN A 10 N PHE A 7 SHEET 3 AA 3 ALA A 121 ILE A 122 -1 O ALA A 121 N ALA A 15 SHEET 1 AB 2 THR A 29 VAL A 31 0 SHEET 2 AB 2 ASP A 37 ALA A 39 -1 O VAL A 38 N LEU A 30 SHEET 1 AC 5 VAL A 103 SER A 107 0 SHEET 2 AC 5 THR A 78 SER A 84 1 O VAL A 80 N ILE A 104 SHEET 3 AC 5 ARG A 47 ILE A 52 1 O ARG A 47 N VAL A 79 SHEET 4 AC 5 ALA A 134 LEU A 138 -1 O ALA A 134 N ILE A 52 SHEET 5 AC 5 VAL A 144 LEU A 149 -1 N ILE A 145 O VAL A 137 SHEET 1 BA 3 GLN B 3 PHE B 7 0 SHEET 2 BA 3 ASN B 10 ALA B 15 -1 O ASN B 10 N PHE B 7 SHEET 3 BA 3 ALA B 121 ILE B 122 -1 O ALA B 121 N ALA B 15 SHEET 1 BB 2 THR B 29 VAL B 31 0 SHEET 2 BB 2 ASP B 37 ALA B 39 -1 O VAL B 38 N LEU B 30 SHEET 1 BC 5 VAL B 103 SER B 107 0 SHEET 2 BC 5 THR B 78 SER B 84 1 O VAL B 80 N ILE B 104 SHEET 3 BC 5 ARG B 47 ILE B 52 1 O ARG B 47 N VAL B 79 SHEET 4 BC 5 ALA B 134 LEU B 138 -1 O ALA B 134 N ILE B 52 SHEET 5 BC 5 VAL B 144 LEU B 149 -1 N ILE B 145 O VAL B 137
SSBOND 1 CYS A 61 CYS A 95 1555 1555 2.04 SSBOND 2 CYS B 61 CYS B 95 1555 1555 2.04
CISPEP 1 ARG A 110 GLY A 111 0 -4.64
CRYST1 56.180 62.560 88.000 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.017800 0.000000 0.000000 0.00000
SCALE2 0.000000 0.015985 0.000000 0.00000
SCALE3 0.000000 0.000000 0.011364 0.00000