10 20 30 40 50 60 70 80 3ZNF - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ZINC FINGER DNA BINDING DOMAIN 09-JUL-90 3ZNF
TITLE HIGH-RESOLUTION THREE-DIMENSIONAL STRUCTURE OF A SINGLE TITLE 2 ZINC FINGER FROM A HUMAN ENHANCER BINDING PROTEIN IN TITLE 3 SOLUTION
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606
KEYWDS ZINC FINGER DNA BINDING DOMAIN
EXPDTA SOLUTION NMR
AUTHOR A.M.GRONENBORN,G.M.CLORE,J.G.OMICHINSKI
REVDAT 2 24-FEB-09 3ZNF 1 VERSN REVDAT 1 15-JAN-92 3ZNF 0
JRNL AUTH J.G.OMICHINSKI,G.M.CLORE,E.APPELLA,K.SAKAGUCHI, JRNL AUTH 2 A.M.GRONENBORN JRNL TITL HIGH-RESOLUTION THREE-DIMENSIONAL STRUCTURE OF A JRNL TITL 2 SINGLE ZINC FINGER FROM A HUMAN ENHANCER BINDING JRNL TITL 3 PROTEIN IN SOLUTION. JRNL REF BIOCHEMISTRY V. 29 9324 1990 JRNL REFN ISSN 0006-2960 JRNL PMID 2248949 JRNL DOI 10.1021/BI00492A004
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE 3D STRUCTURE OF THE ZINC FINGER IN SOLUTION REMARK 3 BY NMR IS BASED ON 487 APPROXIMATE INTERPROTON DISTANCE REMARK 3 RESTRAINTS AND 63 TORSION ANGLE RESTRAINTS DERIVED FROM REMARK 3 NOE AND COUPLING CONSTANT MEASUREMENTS. THE STRUCTURES REMARK 3 ARE CALCULATED USING THE HYBRID METRIC MATRIX DISTANCE REMARK 3 GEOMETRY-DYNAMICAL SIMULATED ANNEALING METHOD DESCRIBED REMARK 3 BY M. NILGES, G. M. CLORE, AND A. M. GRONENBORN (1988) REMARK 3 FEBS LETT 229, 317. REMARK 3 REMARK 3 THIS ENTRY REPRESENTS THE RESTRAINED MINIMIZED AVERAGE REMARK 3 STRUCTURE (SA)$R DERIVED BY RESTRAINED LEAST SQUARE REMARK 3 REFINEMENT OF THE MEAN STRUCTURE OBTAINED BY AVERAGING THE REMARK 3 COORDINATES OF THE FINAL 41 SA STRUCTURES BEST FITTED TO REMARK 3 EACH OTHER. THE ENTIRE SET OF 41 MODELS CAN BE FOUND IN REMARK 3 PDB ENTRY 4ZNF. REMARK 3 REMARK 3 THE FIELD IN THIS ENTRY THAT OCCUPIES COLUMNS 61 - 66 REMARK 3 (RESERVED FOR B-VALUES IN X-RAY CRYSTALLOGRAPHIC ENTRIES) REMARK 3 GIVES THE AVERAGE RMS DIFFERENCE BETWEEN THE INDIVIDUAL SA REMARK 3 STRUCTURES AND THE MEAN STRUCTURE.
REMARK 4 REMARK 4 3ZNF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 4 CG HIS A 4 ND1 -0.116 REMARK 500 HIS A 27 CG HIS A 27 ND1 -0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 2 7.99 -63.19 REMARK 500 CYS A 5 162.84 -45.11 REMARK 500 TYR A 7 -76.00 -160.62 REMARK 500 CYS A 8 -160.70 -59.19 REMARK 500 PHE A 10 98.43 -67.63 REMARK 500 SER A 24 175.05 -50.15 REMARK 500 LYS A 25 29.47 -76.94 REMARK 500 ALA A 26 -92.79 -46.94 REMARK 500 HIS A 27 75.19 -176.11 REMARK 500 SER A 28 47.11 -165.44 REMARK 500 LYS A 29 39.34 -84.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 1 0.30 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 31 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 21 NE2 REMARK 620 2 HIS A 27 NE2 113.5 REMARK 620 3 CYS A 5 SG 110.8 111.3 REMARK 620 4 CYS A 8 SG 110.5 98.4 111.8 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 31
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ZNF RELATED DB: PDB
DBREF 3ZNF A 1 30 UNP P15822 ZEP1_HUMAN 2113 2142
SEQADV 3ZNF SER A 6 UNP P15822 THR 2118 CONFLICT
SEQRES 1 A 30 ARG PRO TYR HIS CYS SER TYR CYS ASN PHE SER PHE LYS SEQRES 2 A 30 THR LYS GLY ASN LEU THR LYS HIS MET LYS SER LYS ALA SEQRES 3 A 30 HIS SER LYS LYS
HET ZN A 31 1
HETNAM ZN ZINC ION
FORMUL 2 ZN ZN 2+
HELIX 1 1 THR A 14 SER A 24 1 11
LINK ZN ZN A 31 NE2 HIS A 21 1555 1555 2.00 LINK ZN ZN A 31 NE2 HIS A 27 1555 1555 2.02 LINK ZN ZN A 31 SG CYS A 5 1555 1555 2.30 LINK ZN ZN A 31 SG CYS A 8 1555 1555 2.30
SITE 1 AC1 4 CYS A 5 CYS A 8 HIS A 21 HIS A 27
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000