10 20 30 40 50 60 70 80 3ZD0 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSPORT PROTEIN 23-NOV-12 3ZD0
TITLE THE SOLUTION STRUCTURE OF MONOMERIC HEPATITIS C VIRUS P7 TITLE 2 YIELDS POTENT INHIBITORS OF VIRION RELEASE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: P7 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 747-809; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: FLAG TAG AT RESIDUES UPTO AND INCLUDING RESIDUE 18
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS; SOURCE 3 ORGANISM_COMMON: HCV; SOURCE 4 ORGANISM_TAXID: 11103; SOURCE 5 STRAIN: 1B; SOURCE 6 VARIANT: J4 ISOLATE; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PGEX6P1; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PGEX-FLAGP7(J4)
KEYWDS TRANSPORT PROTEIN, ANTIVIRAL, ION CHANNEL, VIROPORIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.L.FOSTER,G.S.THOMPSON,A.P.KALVERDA,J.KANKANALA,J.THOMPSON, AUTHOR 2 A.M.BARKER,D.CLARKE,M.NOERENBERG,A.R.PEARSON,D.J.ROWLANDS, AUTHOR 3 S.W.HOMANS,M.HARRIS,R.FOSTER,S.D.C.GRIFFIN
REVDAT 3 12-FEB-14 3ZD0 1 JRNL REVDAT 2 18-SEP-13 3ZD0 1 JRNL REVDAT 1 04-SEP-13 3ZD0 0
JRNL AUTH T.L.FOSTER,G.S.THOMPSON,A.P.KALVERDA,J.KANKANALA,M.BENTHAM, JRNL AUTH 2 L.F.WETHERILL,J.THOMPSON,A.M.BARKER,D.CLARKE,M.NOERENBERG, JRNL AUTH 3 A.R.PEARSON,D.J.ROWLANDS,S.W.HOMANS,M.HARRIS,R.FOSTER, JRNL AUTH 4 S.D.C.GRIFFIN JRNL TITL STRUCTURE-GUIDED DESIGN AFFIRMS INHIBITORS OF HEPATITIS C JRNL TITL 2 VIRUS P7 AS A VIABLE CLASS OF ANTIVIRALS TARGETING VIRION JRNL TITL 3 RELEASE JRNL REF HEPATOLOGY V. 59 408 2014 JRNL REFN ISSN 0270-9139 JRNL PMID 24022996 JRNL DOI 10.1002/HEP.26685
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.L.FOSTER REMARK 1 TITL STRUCTURAL AND FUNCTIONAL CHARACTERISATION OF THE HEPITITIS REMARK 1 TITL 2 C VIRUS PROTEINS P7, NS2-3 AND NS5A REMARK 1 EDIT T.L.FOSTER REMARK 1 REF PH D THESIS 2010 REMARK 1 PUBL LEEDS: INSTITUTE (THESIS) REMARK 1 REFN
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : MEMBRANE CS ROSETTA,ARIA 2.2U3,CNS REMARK 3 AUTHORS : SHEN,VERNON,BAKER,BAX,RIEPLING,HABECK, REMARK 3 : BARDIAUX,BERNARD,MALLIAVIN,NILGES,BRUNGER, REMARK 3 : ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE, REMARK 3 : JIANG,KUSZEWSKI,NILGES,PANNU,READ,RICE, REMARK 3 : SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINED FROM AN INITAL TEMPLATE REMARK 3 STRUCTURE FROM CS MEMBRANE ROSETTA ALL NOES ASSIGNED REMARK 3 AUTOMATICALLY
REMARK 4 REMARK 4 3ZD0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-NOV-12. REMARK 100 THE PDBE ID CODE IS EBI-54895.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0 REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : METHANOL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 13C_HSQC_HCCARO; 15N_HSQC; HNCA; REMARK 210 HNCOCA; HCCONH; HCCACONH; REMARK 210 HBCBCGCDHD; HCCH_TOCSY; HCCH_COSY; REMARK 210 HNCACB; CBCACONH; HCCHTOCSY; REMARK 210 HNHA; 15N_HSQC_NOESY; 2D_HH_NOESY; REMARK 210 2D_HH_TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : UNITYINOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS 1.15, REMARK 210 CCPNMR ANALYSIS 2.2, TALOS REMARK 210 2007.068.09.0, CNS 1.1, CS REMARK 210 ROSETTA 1.01, ROSETTA 3 3, REMARK 210 ARIA 2.2U3 REMARK 210 METHOD USED : ARIA MEMBRANE CS ROSETTA REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE REMARK 210 NMR SPECTROSCOPY ON 13C, 15N-LABELED FLAG-P7. STRUCTURES REMARK 210 ARE FROM MEMBRANE CS ROSETTA REFINED WITH NOES IN ARIA 2
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 1
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 46 -80.85 -54.90 REMARK 500 1 ALA A 47 -147.98 51.16 REMARK 500 1 ALA A 56 -54.82 -26.48 REMARK 500 1 PRO A 77 158.30 -49.98 REMARK 500 2 CYS A 46 1.99 -62.19 REMARK 500 2 ALA A 47 153.70 -44.54 REMARK 500 2 ALA A 48 5.69 -58.94 REMARK 500 2 ALA A 56 -51.86 -25.05 REMARK 500 3 CYS A 46 -81.28 -53.10 REMARK 500 3 ALA A 47 -141.57 41.51 REMARK 500 3 ALA A 56 -51.98 -24.81 REMARK 500 3 PRO A 77 152.85 -45.22 REMARK 500 4 CYS A 46 -81.42 -60.02 REMARK 500 4 ALA A 47 -141.08 45.76 REMARK 500 4 ALA A 56 -52.99 -25.17 REMARK 500 4 PRO A 77 152.30 -43.51 REMARK 500 5 ALA A 48 8.79 -61.85 REMARK 500 5 ALA A 56 -54.49 -25.90 REMARK 500 6 CYS A 46 -81.36 -52.50 REMARK 500 6 ALA A 47 -143.16 44.73 REMARK 500 6 ALA A 56 -54.03 -25.96 REMARK 500 6 PRO A 77 118.57 -38.43 REMARK 500 7 ALA A 47 161.18 -46.90 REMARK 500 7 ALA A 48 10.90 -62.77 REMARK 500 7 ALA A 56 -51.52 -23.99 REMARK 500 7 PRO A 77 151.63 -41.44 REMARK 500 8 CYS A 46 -81.15 -61.09 REMARK 500 8 ALA A 47 -144.83 47.97 REMARK 500 8 ALA A 56 -54.21 -26.22 REMARK 500 9 ALA A 47 153.47 -48.69 REMARK 500 9 ALA A 48 5.91 -60.17 REMARK 500 9 ALA A 56 -53.72 -25.89 REMARK 500 10 CYS A 46 -81.01 -55.95 REMARK 500 10 ALA A 47 -147.34 49.73 REMARK 500 10 ALA A 56 -54.49 -26.44 REMARK 500 11 CYS A 46 -81.90 -54.44 REMARK 500 11 ALA A 47 -145.71 45.79 REMARK 500 11 ALA A 56 -53.79 -25.23 REMARK 500 12 CYS A 46 -81.52 -58.63 REMARK 500 12 ALA A 47 -147.33 46.80 REMARK 500 12 ALA A 56 -52.77 -25.37 REMARK 500 13 CYS A 46 9.28 -67.95 REMARK 500 13 ALA A 47 153.52 -43.92 REMARK 500 13 ALA A 48 6.42 -59.34 REMARK 500 13 ALA A 56 -53.63 -25.57 REMARK 500 14 CYS A 46 15.93 -69.54 REMARK 500 14 ALA A 47 156.13 -49.85 REMARK 500 14 ALA A 48 7.43 -61.62 REMARK 500 14 ALA A 56 -54.29 -25.35 REMARK 500 15 CYS A 46 -81.87 -57.07 REMARK 500 REMARK 500 THIS ENTRY HAS 67 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL
REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED.
DBREF 3ZD0 A 20 82 UNP Q9WLK8 Q9WLK8_9HEPC 747 809
SEQADV 3ZD0 GLY A 1 UNP Q9WLK8 EXPRESSION TAG SEQADV 3ZD0 PRO A 2 UNP Q9WLK8 EXPRESSION TAG SEQADV 3ZD0 LEU A 3 UNP Q9WLK8 EXPRESSION TAG SEQADV 3ZD0 GLY A 4 UNP Q9WLK8 EXPRESSION TAG SEQADV 3ZD0 SER A 5 UNP Q9WLK8 EXPRESSION TAG SEQADV 3ZD0 PRO A 6 UNP Q9WLK8 EXPRESSION TAG SEQADV 3ZD0 GLU A 7 UNP Q9WLK8 EXPRESSION TAG SEQADV 3ZD0 PHE A 8 UNP Q9WLK8 EXPRESSION TAG SEQADV 3ZD0 ALA A 9 UNP Q9WLK8 EXPRESSION TAG SEQADV 3ZD0 ALA A 10 UNP Q9WLK8 EXPRESSION TAG SEQADV 3ZD0 MET A 11 UNP Q9WLK8 EXPRESSION TAG SEQADV 3ZD0 ASP A 12 UNP Q9WLK8 EXPRESSION TAG SEQADV 3ZD0 TYR A 13 UNP Q9WLK8 EXPRESSION TAG SEQADV 3ZD0 LYS A 14 UNP Q9WLK8 EXPRESSION TAG SEQADV 3ZD0 ASP A 15 UNP Q9WLK8 EXPRESSION TAG SEQADV 3ZD0 ASP A 16 UNP Q9WLK8 EXPRESSION TAG SEQADV 3ZD0 ASP A 17 UNP Q9WLK8 EXPRESSION TAG SEQADV 3ZD0 ASP A 18 UNP Q9WLK8 EXPRESSION TAG SEQADV 3ZD0 LYS A 19 UNP Q9WLK8 EXPRESSION TAG SEQADV 3ZD0 ALA A 83 UNP Q9WLK8 EXPRESSION TAG SEQADV 3ZD0 ALA A 84 UNP Q9WLK8 EXPRESSION TAG SEQADV 3ZD0 ALA A 85 UNP Q9WLK8 EXPRESSION TAG SEQADV 3ZD0 SER A 86 UNP Q9WLK8 EXPRESSION TAG
SEQRES 1 A 86 GLY PRO LEU GLY SER PRO GLU PHE ALA ALA MET ASP TYR SEQRES 2 A 86 LYS ASP ASP ASP ASP LYS ALA LEU GLU ASN LEU VAL VAL SEQRES 3 A 86 LEU ASN ALA ALA SER VAL ALA GLY ALA HIS GLY ILE LEU SEQRES 4 A 86 SER PHE LEU VAL PHE PHE CYS ALA ALA TRP TYR ILE LYS SEQRES 5 A 86 GLY ARG LEU ALA PRO GLY ALA ALA TYR ALA PHE TYR GLY SEQRES 6 A 86 VAL TRP PRO LEU LEU LEU LEU LEU LEU ALA LEU PRO PRO SEQRES 7 A 86 ARG ALA TYR ALA ALA ALA ALA SER
HELIX 1 1 LEU A 3 PHE A 45 1 43 HELIX 2 2 ALA A 48 GLY A 53 1 6 HELIX 3 3 ALA A 56 ALA A 75 1 20 HELIX 4 4 PRO A 77 ALA A 84 1 8
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000