10 20 30 40 50 60 70 80 3SXF - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE/TRANSFERASE INHIBITOR 14-JUL-11 3SXF
TITLE CALCIUM-DEPENDENT PROTEIN KINASE 1 FROM TOXOPLASMA GONDII (TGCDPK1) IN TITLE 2 COMPLEX WITH BUMPED KINASE INHIBITOR, RM-1-89
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN-DOMAIN PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CALMODULIN-DOMAIN PROTEIN KINASE, PUTATIVE; COMPND 5 EC: 2.7.11.17; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 3 ORGANISM_TAXID: 5811; SOURCE 4 GENE: AAG53993, CDPK1, TGGT1_059880, TGVEG_042030; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: AVA0421
KEYWDS SERINE/THREONINE PROTEIN KINASE, TRANSFERASE, CALCIUM-BINDING, ATP- KEYWDS 2 BINDING, CALMODULIN, EF HAND, BUMPED KINASE INHIBITOR, TRANSFERASE- KEYWDS 3 TRANSFERASE INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR E.T.LARSON,E.A.MERRITT
REVDAT 2 09-JAN-13 3SXF 1 JRNL REVDAT 1 14-MAR-12 3SXF 0
JRNL AUTH E.T.LARSON,K.K.OJO,R.C.MURPHY,S.M.JOHNSON,Z.ZHANG,J.E.KIM, JRNL AUTH 2 D.J.LEIBLY,A.M.FOX,M.C.REID,E.J.DALE,B.G.PERERA,J.KIM, JRNL AUTH 3 S.N.HEWITT,W.G.HOL,C.L.VERLINDE,E.FAN,W.C.VAN VOORHIS, JRNL AUTH 4 D.J.MALY,E.A.MERRITT JRNL TITL MULTIPLE DETERMINANTS FOR SELECTIVE INHIBITION OF JRNL TITL 2 APICOMPLEXAN CALCIUM-DEPENDENT PROTEIN KINASE CDPK1. JRNL REF J.MED.CHEM. V. 55 2803 2012 JRNL REFN ISSN 0022-2623 JRNL PMID 22369268 JRNL DOI 10.1021/JM201725V
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.K.OJO,E.T.LARSON,K.R.KEYLOUN,L.J.CASTANEDA,A.E.DEROCHER, REMARK 1 AUTH 2 K.K.INAMPUDI,J.E.KIM,T.L.ARAKAKI,R.C.MURPHY,L.ZHANG, REMARK 1 AUTH 3 A.J.NAPULI,D.J.MALY,C.L.VERLINDE,F.S.BUCKNER,M.PARSONS, REMARK 1 AUTH 4 W.G.HOL,E.A.MERRITT,W.C.VAN VOORHIS REMARK 1 TITL TOXOPLASMA GONDII CALCIUM-DEPENDENT PROTEIN KINASE 1 IS A REMARK 1 TITL 2 TARGET FOR SELECTIVE KINASE INHIBITORS. REMARK 1 REF NAT.STRUCT.MOL.BIOL. V. 17 602 2010 REMARK 1 REFN ISSN 1545-9993 REMARK 1 PMID 20436472 REMARK 1 DOI 10.1038/NSMB.1818 REMARK 1 REFERENCE 2 REMARK 1 AUTH R.C.MURPHY,K.K.OJO,E.T.LARSON,A.CASTELLANOS-GONZALEZ, REMARK 1 AUTH 2 B.G.PERERA,K.R.KEYLOUN,J.E.KIM,J.G.BHANDARI,N.R.MULLER, REMARK 1 AUTH 3 C.L.VERLINDE,A.C.WHITE,E.A.MERRITT,W.C.VAN VOORHIS,D.J.MALY REMARK 1 TITL DISCOVERY OF POTENT AND SELECTIVE INHIBITORS OF REMARK 1 TITL 2 CALCIUM-DEPENDENT PROTEIN KINASE 1 (CDPK1) FROM C. PARVUM REMARK 1 TITL 3 AND T. GONDII. REMARK 1 REF ACS MED CHEM LETT V. 1 331 2010 REMARK 1 REFN ISSN 1948-5875 REMARK 1 PMID 21116453 REMARK 1 DOI 10.1021/ML100096T
REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0095 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 28099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1432 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.04 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.09 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1883 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3614 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 76 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.41000 REMARK 3 B22 (A**2) : 2.44000 REMARK 3 B33 (A**2) : -1.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.38000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.183 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.149 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.032 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3772 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2596 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5075 ; 0.850 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6327 ; 0.735 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 463 ; 4.559 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 561 ; 0.049 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4137 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 749 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 45 A 119 REMARK 3 ORIGIN FOR THE GROUP (A): 12.9713 14.1346 70.7336 REMARK 3 T TENSOR REMARK 3 T11: 0.0866 T22: 0.0337 REMARK 3 T33: 0.1309 T12: 0.0039 REMARK 3 T13: -0.0120 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 1.8594 L22: 2.9480 REMARK 3 L33: 6.5953 L12: -0.8404 REMARK 3 L13: 1.1422 L23: -1.8111 REMARK 3 S TENSOR REMARK 3 S11: -0.1202 S12: -0.1548 S13: 0.1662 REMARK 3 S21: 0.2653 S22: -0.0863 S23: -0.1070 REMARK 3 S31: -0.2658 S32: 0.1317 S33: 0.2065 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 120 A 213 REMARK 3 ORIGIN FOR THE GROUP (A): 16.4815 15.2717 55.4585 REMARK 3 T TENSOR REMARK 3 T11: 0.1245 T22: 0.1103 REMARK 3 T33: 0.1646 T12: 0.0682 REMARK 3 T13: 0.0096 T23: 0.0328 REMARK 3 L TENSOR REMARK 3 L11: 1.0569 L22: 1.7477 REMARK 3 L33: 4.1348 L12: -0.0962 REMARK 3 L13: 0.4408 L23: -1.6160 REMARK 3 S TENSOR REMARK 3 S11: 0.0950 S12: 0.0854 S13: -0.0389 REMARK 3 S21: -0.1298 S22: -0.3230 S23: -0.1842 REMARK 3 S31: 0.3221 S32: 0.4746 S33: 0.2280 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 214 A 356 REMARK 3 ORIGIN FOR THE GROUP (A): 16.1480 22.0953 43.5436 REMARK 3 T TENSOR REMARK 3 T11: 0.1307 T22: 0.1487 REMARK 3 T33: 0.0940 T12: 0.0861 REMARK 3 T13: 0.0164 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 1.4775 L22: 1.6378 REMARK 3 L33: 2.1841 L12: 0.0685 REMARK 3 L13: 0.9195 L23: 0.0091 REMARK 3 S TENSOR REMARK 3 S11: 0.0534 S12: 0.3352 S13: -0.0511 REMARK 3 S21: -0.2744 S22: -0.0751 S23: -0.0365 REMARK 3 S31: 0.2876 S32: 0.3344 S33: 0.0217 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 357 A 434 REMARK 3 ORIGIN FOR THE GROUP (A): 38.8265 30.1111 86.3275 REMARK 3 T TENSOR REMARK 3 T11: 0.2934 T22: 0.0605 REMARK 3 T33: 0.0392 T12: -0.0057 REMARK 3 T13: 0.0002 T23: -0.0169 REMARK 3 L TENSOR REMARK 3 L11: 8.0548 L22: 8.2788 REMARK 3 L33: 12.0253 L12: -6.6929 REMARK 3 L13: -2.0254 L23: 1.7219 REMARK 3 S TENSOR REMARK 3 S11: 0.2797 S12: 0.6104 S13: -0.3436 REMARK 3 S21: 0.2049 S22: -0.4101 S23: 0.4939 REMARK 3 S31: -0.0759 S32: -0.3025 S33: 0.1304 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 435 A 507 REMARK 3 ORIGIN FOR THE GROUP (A): 35.5085 37.5202 54.6299 REMARK 3 T TENSOR REMARK 3 T11: 0.0546 T22: 0.1186 REMARK 3 T33: 0.2054 T12: 0.0395 REMARK 3 T13: -0.0218 T23: 0.0563 REMARK 3 L TENSOR REMARK 3 L11: 4.6977 L22: 2.9811 REMARK 3 L33: 3.4749 L12: -0.6944 REMARK 3 L13: -1.7818 L23: 0.3298 REMARK 3 S TENSOR REMARK 3 S11: 0.0408 S12: -0.0059 S13: 0.3612 REMARK 3 S21: 0.2171 S22: 0.2884 S23: 0.1478 REMARK 3 S31: -0.1809 S32: -0.0415 S33: -0.3292 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS; U VALUES: WITH TLS ADDED
REMARK 4 REMARK 4 3SXF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUL-11. REMARK 100 THE RCSB ID CODE IS RCSB066772.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : SIDE SCATTERING I-BEAM BENT REMARK 200 SINGLE CRYSTAL; ASYMMETRIC CUT REMARK 200 4.965 DEG. REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28166 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.040 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : 0.06400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.4960 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.69500 REMARK 200 R SYM FOR SHELL (I) : 0.69500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 3I7B REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% PEG 3350, 0.275 M AMMONIUM REMARK 280 CITRATE, 5 MM DTT, 2.3 MM RM-1-89; MOTHER LIQUOR SUPPLEMENTED REMARK 280 WITH 10% ETHYLENE GLYCOL PRIOR TO FREEZING IN LN2, PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.11900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS AU
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 PRO A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 MET A -1 REMARK 465 MET A 0 REMARK 465 ASP A 30 REMARK 465 HIS A 31 REMARK 465 LEU A 32 REMARK 465 HIS A 33 REMARK 465 ALA A 34 REMARK 465 THR A 35 REMARK 465 PRO A 36 REMARK 465 GLY A 37 REMARK 465 MET A 38 REMARK 465 PHE A 39 REMARK 465 VAL A 40 REMARK 465 GLN A 41 REMARK 465 HIS A 42 REMARK 465 SER A 43 REMARK 465 THR A 44 REMARK 465 LYS A 391 REMARK 465 GLY A 392 REMARK 465 GLN A 393 REMARK 465 ASP A 394 REMARK 465 ALA A 395 REMARK 465 SER A 396 REMARK 465 MET A 397 REMARK 465 LEU A 398 REMARK 465 ASP A 399 REMARK 465 ALA A 400 REMARK 465 SER A 401
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 207 CG CD CE NZ REMARK 470 LYS A 260 CD CE NZ REMARK 470 LYS A 264 CD CE NZ REMARK 470 LYS A 266 CD CE NZ REMARK 470 MET A 388 CG SD CE REMARK 470 ARG A 389 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 404 CG CD OE1 OE2 REMARK 470 LYS A 418 CG CD CE NZ
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 62 -6.09 72.55 REMARK 500 ASP A 120 -167.28 -125.95 REMARK 500 ARG A 173 -39.20 81.36 REMARK 500 ASP A 195 8.72 83.97 REMARK 500 GLU A 423 107.09 -55.37 REMARK 500 ASN A 487 57.56 -107.15 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BK5 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 711 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 712
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3I79 RELATED DB: PDB REMARK 900 APO FORM OF SAME ENZYME REMARK 900 RELATED ID: 3I7B RELATED DB: PDB REMARK 900 SAME ENZYME IN COMPLEX WITH NM-PP1 REMARK 900 RELATED ID: 3I7C RELATED DB: PDB REMARK 900 SAME ENZYME IN COMPLEX WITH NA-PP2 REMARK 900 RELATED ID: 3N51 RELATED DB: PDB REMARK 900 SAME ENZYME IN COMPLEX WITH RM-1-95 REMARK 900 RELATED ID: 3NYV RELATED DB: PDB REMARK 900 SAME ENZYME IN COMPLEX WITH WHI-P180 REMARK 900 RELATED ID: 3MWU RELATED DB: PDB REMARK 900 HOMOLOG FROM C. PARVUM IN COMPLEX WITH RM-1-95 AND CALCIUM REMARK 900 RELATED ID: 3NCG RELATED DB: PDB REMARK 900 HOMOLOG FROM C. PARVUM IN COMPLEX WITH NM-PP1 AND CALCIUM REMARK 900 RELATED ID: 3SX9 RELATED DB: PDB REMARK 900 SAME ENZYME IN COMPLEX WITH RM-1-132 REMARK 900 RELATED ID: 3T3U RELATED DB: PDB REMARK 900 SAME ENZYME IN COMPLEX WITH RM-1-130 REMARK 900 RELATED ID: 3T3V RELATED DB: PDB REMARK 900 SAME ENZYME IN COMPLEX WITH RM-1-87
DBREF 3SXF A 30 507 UNP Q9BJF5 Q9BJF5_TOXGO 30 507
SEQADV 3SXF GLY A -5 UNP Q9BJF5 EXPRESSION TAG SEQADV 3SXF PRO A -4 UNP Q9BJF5 EXPRESSION TAG SEQADV 3SXF GLY A -3 UNP Q9BJF5 EXPRESSION TAG SEQADV 3SXF SER A -2 UNP Q9BJF5 EXPRESSION TAG SEQADV 3SXF MET A -1 UNP Q9BJF5 EXPRESSION TAG SEQADV 3SXF MET A 0 UNP Q9BJF5 EXPRESSION TAG
SEQRES 1 A 484 GLY PRO GLY SER MET MET ASP HIS LEU HIS ALA THR PRO SEQRES 2 A 484 GLY MET PHE VAL GLN HIS SER THR ALA ILE PHE SER ASP SEQRES 3 A 484 ARG TYR LYS GLY GLN ARG VAL LEU GLY LYS GLY SER PHE SEQRES 4 A 484 GLY GLU VAL ILE LEU CYS LYS ASP LYS ILE THR GLY GLN SEQRES 5 A 484 GLU CYS ALA VAL LYS VAL ILE SER LYS ARG GLN VAL LYS SEQRES 6 A 484 GLN LYS THR ASP LYS GLU SER LEU LEU ARG GLU VAL GLN SEQRES 7 A 484 LEU LEU LYS GLN LEU ASP HIS PRO ASN ILE MET LYS LEU SEQRES 8 A 484 TYR GLU PHE PHE GLU ASP LYS GLY TYR PHE TYR LEU VAL SEQRES 9 A 484 GLY GLU VAL TYR THR GLY GLY GLU LEU PHE ASP GLU ILE SEQRES 10 A 484 ILE SER ARG LYS ARG PHE SER GLU VAL ASP ALA ALA ARG SEQRES 11 A 484 ILE ILE ARG GLN VAL LEU SER GLY ILE THR TYR MET HIS SEQRES 12 A 484 LYS ASN LYS ILE VAL HIS ARG ASP LEU LYS PRO GLU ASN SEQRES 13 A 484 LEU LEU LEU GLU SER LYS SER LYS ASP ALA ASN ILE ARG SEQRES 14 A 484 ILE ILE ASP PHE GLY LEU SER THR HIS PHE GLU ALA SER SEQRES 15 A 484 LYS LYS MET LYS ASP LYS ILE GLY THR ALA TYR TYR ILE SEQRES 16 A 484 ALA PRO GLU VAL LEU HIS GLY THR TYR ASP GLU LYS CYS SEQRES 17 A 484 ASP VAL TRP SER THR GLY VAL ILE LEU TYR ILE LEU LEU SEQRES 18 A 484 SER GLY CYS PRO PRO PHE ASN GLY ALA ASN GLU TYR ASP SEQRES 19 A 484 ILE LEU LYS LYS VAL GLU LYS GLY LYS TYR THR PHE GLU SEQRES 20 A 484 LEU PRO GLN TRP LYS LYS VAL SER GLU SER ALA LYS ASP SEQRES 21 A 484 LEU ILE ARG LYS MET LEU THR TYR VAL PRO SER MET ARG SEQRES 22 A 484 ILE SER ALA ARG ASP ALA LEU ASP HIS GLU TRP ILE GLN SEQRES 23 A 484 THR TYR THR LYS GLU GLN ILE SER VAL ASP VAL PRO SER SEQRES 24 A 484 LEU ASP ASN ALA ILE LEU ASN ILE ARG GLN PHE GLN GLY SEQRES 25 A 484 THR GLN LYS LEU ALA GLN ALA ALA LEU LEU TYR MET GLY SEQRES 26 A 484 SER LYS LEU THR SER GLN ASP GLU THR LYS GLU LEU THR SEQRES 27 A 484 ALA ILE PHE HIS LYS MET ASP LYS ASN GLY ASP GLY GLN SEQRES 28 A 484 LEU ASP ARG ALA GLU LEU ILE GLU GLY TYR LYS GLU LEU SEQRES 29 A 484 MET ARG MET LYS GLY GLN ASP ALA SER MET LEU ASP ALA SEQRES 30 A 484 SER ALA VAL GLU HIS GLU VAL ASP GLN VAL LEU ASP ALA SEQRES 31 A 484 VAL ASP PHE ASP LYS ASN GLY TYR ILE GLU TYR SER GLU SEQRES 32 A 484 PHE VAL THR VAL ALA MET ASP ARG LYS THR LEU LEU SER SEQRES 33 A 484 ARG GLU ARG LEU GLU ARG ALA PHE ARG MET PHE ASP SER SEQRES 34 A 484 ASP ASN SER GLY LYS ILE SER SER THR GLU LEU ALA THR SEQRES 35 A 484 ILE PHE GLY VAL SER ASP VAL ASP SER GLU THR TRP LYS SEQRES 36 A 484 SER VAL LEU SER GLU VAL ASP LYS ASN ASN ASP GLY GLU SEQRES 37 A 484 VAL ASP PHE ASP GLU PHE GLN GLN MET LEU LEU LYS LEU SEQRES 38 A 484 CYS GLY ASN
HET BK5 A 701 26 HET DMS A 711 4 HET EDO A 712 4
HETNAM BK5 3-(6-ETHOXYNAPHTHALEN-2-YL)-1-(PROPAN-2-YL)-1H- HETNAM 2 BK5 PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE HETNAM DMS DIMETHYL SULFOXIDE HETNAM EDO 1,2-ETHANEDIOL
HETSYN BK5 RM-1-89 HETSYN EDO ETHYLENE GLYCOL
FORMUL 2 BK5 C20 H21 N5 O FORMUL 3 DMS C2 H6 O S FORMUL 4 EDO C2 H6 O2 FORMUL 5 HOH *76(H2 O)
HELIX 1 1 ILE A 46 ARG A 50 1 5 HELIX 2 2 ASP A 92 LEU A 106 1 15 HELIX 3 3 GLU A 135 ILE A 141 1 7 HELIX 4 4 SER A 147 ASN A 168 1 22 HELIX 5 5 LYS A 176 GLU A 178 5 3 HELIX 6 6 GLY A 197 PHE A 202 1 6 HELIX 7 7 LYS A 207 ILE A 212 1 6 HELIX 8 8 ALA A 219 GLY A 225 1 7 HELIX 9 9 GLU A 229 GLY A 246 1 18 HELIX 10 10 ASN A 254 GLY A 265 1 12 HELIX 11 11 LEU A 271 VAL A 277 5 7 HELIX 12 12 SER A 278 LEU A 289 1 12 HELIX 13 13 SER A 298 ASP A 304 1 7 HELIX 14 14 HIS A 305 THR A 312 1 8 HELIX 15 15 LEU A 323 ASP A 368 1 46 HELIX 16 16 ASP A 376 MET A 390 1 15 HELIX 17 17 ALA A 402 ASP A 415 1 14 HELIX 18 18 TYR A 424 THR A 436 1 13 HELIX 19 19 THR A 436 ASP A 451 1 16 HELIX 20 20 SER A 460 SER A 470 1 11 HELIX 21 21 ASP A 473 ASP A 485 1 13 HELIX 22 22 ASP A 493 LEU A 504 1 12
SHEET 1 A 5 TYR A 51 GLY A 60 0 SHEET 2 A 5 GLY A 63 ASP A 70 -1 O VAL A 65 N GLY A 58 SHEET 3 A 5 GLU A 76 SER A 83 -1 O VAL A 81 N GLU A 64 SHEET 4 A 5 TYR A 123 GLY A 128 -1 O GLY A 128 N ALA A 78 SHEET 5 A 5 LEU A 114 GLU A 119 -1 N TYR A 115 O VAL A 127 SHEET 1 B 2 LEU A 180 LEU A 182 0 SHEET 2 B 2 ILE A 191 ILE A 193 -1 O ARG A 192 N LEU A 181 SHEET 1 C 2 GLN A 374 LEU A 375 0 SHEET 2 C 2 ILE A 422 GLU A 423 -1 O ILE A 422 N LEU A 375 SHEET 1 D 2 ILE A 458 SER A 459 0 SHEET 2 D 2 GLU A 491 VAL A 492 -1 O VAL A 492 N ILE A 458
SITE 1 AC1 9 VAL A 65 ALA A 78 LYS A 80 MET A 112 SITE 2 AC1 9 LEU A 126 GLU A 129 TYR A 131 ASP A 195 SITE 3 AC1 9 HOH A 820 SITE 1 AC2 7 TYR A 267 THR A 268 PHE A 269 ARG A 286 SITE 2 AC2 7 ASN A 419 GLY A 420 TYR A 421 SITE 1 AC3 5 LYS A 211 GLY A 213 THR A 214 ALA A 215 SITE 2 AC3 5 VAL A 469
CRYST1 47.446 72.238 65.815 90.00 99.18 90.00 P 1 21 1 2
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.021077 0.000000 0.003408 0.00000
SCALE2 0.000000 0.013843 0.000000 0.00000
SCALE3 0.000000 0.000000 0.015391 0.00000