10 20 30 40 50 60 70 80 3SJT - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE/HYDROLASE INHIBITOR 21-JUN-11 3SJT
TITLE CRYSTAL STRUCTURE OF HUMAN ARGINASE I IN COMPLEX WITH THE INHIBITOR TITLE 2 ME-ABH, RESOLUTION 1.60 A, TWINNED STRUCTURE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGINASE-1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LIVER-TYPE ARGINASE, TYPE I ARGINASE; COMPND 5 EC: 3.5.3.1; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ARG1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-11D
KEYWDS HYDROLASE, ABH INHIBITOR DERIVATIVE, TWINNING, 2-AMINO-6-BORONO-2- KEYWDS 2 METHYLHEXANOIC ACID, HYDROLASE-HYDROLASE INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR L.DI COSTANZO,D.W.CHRISTIANSON
REVDAT 2 16-NOV-11 3SJT 1 HETATM REVDAT 1 20-JUL-11 3SJT 0
JRNL AUTH M.ILIES,L.DI COSTANZO,D.P.DOWLING,K.J.THORN,D.W.CHRISTIANSON JRNL TITL BINDING OF ALPHA,ALPHA-DISUBSTITUTED AMINO ACIDS TO ARGINASE JRNL TITL 2 SUGGESTS NEW AVENUES FOR INHIBITOR DESIGN JRNL REF J.MED.CHEM. 2011 JRNL REFN ISSN 0022-2623 JRNL PMID 21728378 JRNL DOI 10.1021/JM200443B
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.DI COSTANZO,G.SABIO,A.MORA,P.C.RODRIGUEZ,A.C.OCHOA, REMARK 1 AUTH 2 F.CENTENO,D.W.CHRISTIANSON REMARK 1 TITL CRYSTAL STRUCTURE OF HUMAN ARGINASE I AT 1.29-A RESOLUTION REMARK 1 TITL 2 AND EXPLORATION OF INHIBITION IN THE IMMUNE RESPONSE. REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 102 13058 2005 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 16141327 REMARK 1 DOI 10.1073/PNAS.0504027102
REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.090 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 81125 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.130 REMARK 3 R VALUE (WORKING SET) : 0.129 REMARK 3 FREE R VALUE : 0.163 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.510 REMARK 3 FREE R VALUE TEST SET COUNT : 2039 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.5748 - 3.8500 0.92 5530 135 0.0755 0.1137 REMARK 3 2 3.8500 - 3.0569 0.96 5765 139 0.0860 0.1378 REMARK 3 3 3.0569 - 2.6707 0.97 5802 141 0.1178 0.1661 REMARK 3 4 2.6707 - 2.4267 0.98 5853 144 0.1358 0.1867 REMARK 3 5 2.4267 - 2.2528 0.97 5852 148 0.1445 0.1452 REMARK 3 6 2.2528 - 2.1200 0.97 5790 152 0.1525 0.1785 REMARK 3 7 2.1200 - 2.0139 0.97 5823 154 0.1575 0.1620 REMARK 3 8 2.0139 - 1.9262 0.97 5776 143 0.1766 0.1824 REMARK 3 9 1.9262 - 1.8521 0.96 5768 141 0.1756 0.2266 REMARK 3 10 1.8521 - 1.7882 0.95 5661 143 0.1909 0.2194 REMARK 3 11 1.7882 - 1.7323 0.93 5542 131 0.2070 0.2054 REMARK 3 12 1.7323 - 1.6828 0.91 5440 135 0.2166 0.2594 REMARK 3 13 1.6828 - 1.6385 0.88 5291 134 0.2263 0.2246 REMARK 3 14 1.6385 - 1.5985 0.86 5121 139 0.2395 0.2518 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 46.13 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.07030 REMARK 3 B22 (A**2) : 1.07030 REMARK 3 B33 (A**2) : -2.14050 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.5000 REMARK 3 OPERATOR: -H, -K, L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4888 REMARK 3 ANGLE : 1.040 6636 REMARK 3 CHIRALITY : 0.066 760 REMARK 3 PLANARITY : 0.005 850 REMARK 3 DIHEDRAL : 17.599 1828 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 TWINNING FRACTION = 0.5 REMARK 3 TWIN LAW = -H, -K, L
REMARK 4 REMARK 4 3SJT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUN-11. REMARK 100 THE RCSB ID CODE IS RCSB066289.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82598 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.597 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.29800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2ZAV REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3 UL OF PROTEIN SOLUTION [3.5 MG/ML REMARK 280 HAI, 50 MM BICINE (PH 8.5), 2 MM MABH, 100 M MNCL2] AND 3 UL OF REMARK 280 PRECIPITANT SOLUTION [0.1 M HEPES (PH 7.0), 22-28% JEFFAMINE] REMARK 280 WERE EQUILIBRATED AGAINST A 1 ML RESERVOIR OF PRECIPITANT REMARK 280 SOLUTION, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 45.16850 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -78.23414 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 90.33700 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 350 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 352 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 497 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 345 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 436 LIES ON A SPECIAL POSITION.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 LYS A 4 REMARK 465 SER A 5 REMARK 465 ASN A 319 REMARK 465 PRO A 320 REMARK 465 PRO A 321 REMARK 465 LYS A 322 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ALA B 3 REMARK 465 LYS B 4 REMARK 465 SER B 5 REMARK 465 ASN B 319 REMARK 465 PRO B 320 REMARK 465 PRO B 321 REMARK 465 LYS B 322
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 14 79.01 -67.95 REMARK 500 GLU A 44 20.91 -79.85 REMARK 500 GLN A 65 -112.75 56.36 REMARK 500 ASP A 124 148.89 -176.70 REMARK 500 ARG A 180 2.35 -155.84 REMARK 500 PRO A 314 57.62 -66.41 REMARK 500 GLU B 44 10.95 -69.93 REMARK 500 ASP B 61 65.46 -110.68 REMARK 500 GLN B 65 -118.91 50.25 REMARK 500 ASP B 124 148.37 -174.50 REMARK 500 ARG B 180 4.48 -155.51 REMARK 500 PRO B 314 40.16 -66.82 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 545 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH A 622 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH A 623 DISTANCE = 5.62 ANGSTROMS REMARK 525 HOH A 660 DISTANCE = 5.36 ANGSTROMS REMARK 525 HOH A 686 DISTANCE = 7.26 ANGSTROMS REMARK 525 HOH A 722 DISTANCE = 5.60 ANGSTROMS REMARK 525 HOH B 516 DISTANCE = 5.47 ANGSTROMS REMARK 525 HOH B 589 DISTANCE = 5.60 ANGSTROMS REMARK 525 HOH B 594 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH B 607 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH B 658 DISTANCE = 8.66 ANGSTROMS REMARK 525 HOH B 710 DISTANCE = 8.05 ANGSTROMS REMARK 525 HOH B 729 DISTANCE = 5.28 ANGSTROMS REMARK 525 HOH B 762 DISTANCE = 7.70 ANGSTROMS
REMARK 600 REMARK 600 HETEROGEN REMARK 600 THE STARTING MATERIAL 2-AMINO-6-BORONO-2-METHYLHEXANOIC ACID (MABH) REMARK 600 UNDERGOES TO NUCLEOPHILIC ATTACK BY THE HYDROXYL GROUP BRIDING THE REMARK 600 DI-MANGANESE CLUSTER OF THE ENZYME.
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 515 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 128 OD2 REMARK 620 2 ASP B 124 OD2 84.9 REMARK 620 3 HIS B 101 ND1 92.5 95.8 REMARK 620 4 ASP B 232 OD2 166.7 89.2 100.0 REMARK 620 5 5AB B 552 O2 90.9 100.2 163.8 78.4 REMARK 620 6 5AB B 552 O3 94.2 156.0 108.2 86.4 55.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 515 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 124 OD2 REMARK 620 2 ASP A 128 OD2 89.9 REMARK 620 3 HIS A 101 ND1 95.0 89.1 REMARK 620 4 ASP A 232 OD2 84.4 165.6 104.5 REMARK 620 5 5AB A 551 O2 99.9 88.1 164.9 79.9 REMARK 620 6 5AB A 551 O3 155.8 92.6 109.1 87.4 56.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 514 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 234 OD1 REMARK 620 2 ASP A 124 OD1 131.7 REMARK 620 3 5AB A 551 O2 129.9 96.2 REMARK 620 4 HIS A 126 ND1 97.7 95.6 89.6 REMARK 620 5 ASP A 232 OD2 87.1 85.9 82.3 171.8 REMARK 620 6 ASP A 234 OD2 55.8 76.1 167.0 101.5 86.6 REMARK 620 7 5AB A 551 O4 78.1 143.2 52.0 101.4 73.0 130.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 514 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 234 OD1 REMARK 620 2 5AB B 552 O2 130.2 REMARK 620 3 ASP B 124 OD1 131.3 98.0 REMARK 620 4 HIS B 126 ND1 89.5 91.8 97.3 REMARK 620 5 ASP B 232 OD2 93.6 80.5 86.4 171.9 REMARK 620 6 ASP B 234 OD2 55.8 167.0 75.5 100.1 87.8 REMARK 620 N 1 2 3 4 5
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5AB A 551 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5AB B 552
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2AEB RELATED DB: PDB REMARK 900 HAI IN COMPLEX WITH ABH REMARK 900 RELATED ID: 3SKK RELATED DB: PDB REMARK 900 RELATED ID: 3SL0 RELATED DB: PDB REMARK 900 RELATED ID: 3SL1 RELATED DB: PDB REMARK 900 RELATED ID: 3GMZ RELATED DB: PDB REMARK 900 RELATED ID: 3GN0 RELATED DB: PDB
DBREF 3SJT A 1 322 UNP P05089 ARGI1_HUMAN 1 322 DBREF 3SJT B 1 322 UNP P05089 ARGI1_HUMAN 1 322
SEQRES 1 A 322 MET SER ALA LYS SER ARG THR ILE GLY ILE ILE GLY ALA SEQRES 2 A 322 PRO PHE SER LYS GLY GLN PRO ARG GLY GLY VAL GLU GLU SEQRES 3 A 322 GLY PRO THR VAL LEU ARG LYS ALA GLY LEU LEU GLU LYS SEQRES 4 A 322 LEU LYS GLU GLN GLU CYS ASP VAL LYS ASP TYR GLY ASP SEQRES 5 A 322 LEU PRO PHE ALA ASP ILE PRO ASN ASP SER PRO PHE GLN SEQRES 6 A 322 ILE VAL LYS ASN PRO ARG SER VAL GLY LYS ALA SER GLU SEQRES 7 A 322 GLN LEU ALA GLY LYS VAL ALA GLU VAL LYS LYS ASN GLY SEQRES 8 A 322 ARG ILE SER LEU VAL LEU GLY GLY ASP HIS SER LEU ALA SEQRES 9 A 322 ILE GLY SER ILE SER GLY HIS ALA ARG VAL HIS PRO ASP SEQRES 10 A 322 LEU GLY VAL ILE TRP VAL ASP ALA HIS THR ASP ILE ASN SEQRES 11 A 322 THR PRO LEU THR THR THR SER GLY ASN LEU HIS GLY GLN SEQRES 12 A 322 PRO VAL SER PHE LEU LEU LYS GLU LEU LYS GLY LYS ILE SEQRES 13 A 322 PRO ASP VAL PRO GLY PHE SER TRP VAL THR PRO CYS ILE SEQRES 14 A 322 SER ALA LYS ASP ILE VAL TYR ILE GLY LEU ARG ASP VAL SEQRES 15 A 322 ASP PRO GLY GLU HIS TYR ILE LEU LYS THR LEU GLY ILE SEQRES 16 A 322 LYS TYR PHE SER MET THR GLU VAL ASP ARG LEU GLY ILE SEQRES 17 A 322 GLY LYS VAL MET GLU GLU THR LEU SER TYR LEU LEU GLY SEQRES 18 A 322 ARG LYS LYS ARG PRO ILE HIS LEU SER PHE ASP VAL ASP SEQRES 19 A 322 GLY LEU ASP PRO SER PHE THR PRO ALA THR GLY THR PRO SEQRES 20 A 322 VAL VAL GLY GLY LEU THR TYR ARG GLU GLY LEU TYR ILE SEQRES 21 A 322 THR GLU GLU ILE TYR LYS THR GLY LEU LEU SER GLY LEU SEQRES 22 A 322 ASP ILE MET GLU VAL ASN PRO SER LEU GLY LYS THR PRO SEQRES 23 A 322 GLU GLU VAL THR ARG THR VAL ASN THR ALA VAL ALA ILE SEQRES 24 A 322 THR LEU ALA CYS PHE GLY LEU ALA ARG GLU GLY ASN HIS SEQRES 25 A 322 LYS PRO ILE ASP TYR LEU ASN PRO PRO LYS SEQRES 1 B 322 MET SER ALA LYS SER ARG THR ILE GLY ILE ILE GLY ALA SEQRES 2 B 322 PRO PHE SER LYS GLY GLN PRO ARG GLY GLY VAL GLU GLU SEQRES 3 B 322 GLY PRO THR VAL LEU ARG LYS ALA GLY LEU LEU GLU LYS SEQRES 4 B 322 LEU LYS GLU GLN GLU CYS ASP VAL LYS ASP TYR GLY ASP SEQRES 5 B 322 LEU PRO PHE ALA ASP ILE PRO ASN ASP SER PRO PHE GLN SEQRES 6 B 322 ILE VAL LYS ASN PRO ARG SER VAL GLY LYS ALA SER GLU SEQRES 7 B 322 GLN LEU ALA GLY LYS VAL ALA GLU VAL LYS LYS ASN GLY SEQRES 8 B 322 ARG ILE SER LEU VAL LEU GLY GLY ASP HIS SER LEU ALA SEQRES 9 B 322 ILE GLY SER ILE SER GLY HIS ALA ARG VAL HIS PRO ASP SEQRES 10 B 322 LEU GLY VAL ILE TRP VAL ASP ALA HIS THR ASP ILE ASN SEQRES 11 B 322 THR PRO LEU THR THR THR SER GLY ASN LEU HIS GLY GLN SEQRES 12 B 322 PRO VAL SER PHE LEU LEU LYS GLU LEU LYS GLY LYS ILE SEQRES 13 B 322 PRO ASP VAL PRO GLY PHE SER TRP VAL THR PRO CYS ILE SEQRES 14 B 322 SER ALA LYS ASP ILE VAL TYR ILE GLY LEU ARG ASP VAL SEQRES 15 B 322 ASP PRO GLY GLU HIS TYR ILE LEU LYS THR LEU GLY ILE SEQRES 16 B 322 LYS TYR PHE SER MET THR GLU VAL ASP ARG LEU GLY ILE SEQRES 17 B 322 GLY LYS VAL MET GLU GLU THR LEU SER TYR LEU LEU GLY SEQRES 18 B 322 ARG LYS LYS ARG PRO ILE HIS LEU SER PHE ASP VAL ASP SEQRES 19 B 322 GLY LEU ASP PRO SER PHE THR PRO ALA THR GLY THR PRO SEQRES 20 B 322 VAL VAL GLY GLY LEU THR TYR ARG GLU GLY LEU TYR ILE SEQRES 21 B 322 THR GLU GLU ILE TYR LYS THR GLY LEU LEU SER GLY LEU SEQRES 22 B 322 ASP ILE MET GLU VAL ASN PRO SER LEU GLY LYS THR PRO SEQRES 23 B 322 GLU GLU VAL THR ARG THR VAL ASN THR ALA VAL ALA ILE SEQRES 24 B 322 THR LEU ALA CYS PHE GLY LEU ALA ARG GLU GLY ASN HIS SEQRES 25 B 322 LYS PRO ILE ASP TYR LEU ASN PRO PRO LYS
HET MN A 514 1 HET MN A 515 1 HET 5AB A 551 14 HET MN B 514 1 HET MN B 515 1 HET 5AB B 552 14
HETNAM MN MANGANESE (II) ION HETNAM 5AB [(5S)-5-AMINO-5-CARBOXYHEXYL](TRIHYDROXY)BORATE
FORMUL 3 MN 4(MN 2+) FORMUL 5 5AB 2(C7 H17 B N O5 1-) FORMUL 9 HOH *765(H2 O)
HELIX 1 1 ARG A 21 GLU A 25 5 5 HELIX 2 2 GLU A 26 ALA A 34 1 9 HELIX 3 3 GLY A 35 GLN A 43 1 9 HELIX 4 4 ASN A 69 ASN A 90 1 22 HELIX 5 5 ASP A 100 SER A 102 5 3 HELIX 6 6 LEU A 103 HIS A 115 1 13 HELIX 7 7 ASN A 139 GLY A 142 5 4 HELIX 8 8 GLN A 143 LEU A 149 1 7 HELIX 9 9 LYS A 150 LYS A 153 5 4 HELIX 10 10 SER A 170 LYS A 172 5 3 HELIX 11 11 ASP A 183 GLY A 194 1 12 HELIX 12 12 MET A 200 GLY A 207 1 8 HELIX 13 13 GLY A 207 GLY A 221 1 15 HELIX 14 14 ASP A 234 LEU A 236 5 3 HELIX 15 15 THR A 253 GLY A 268 1 16 HELIX 16 16 ASN A 279 GLY A 283 5 5 HELIX 17 17 THR A 285 PHE A 304 1 20 HELIX 18 18 ARG B 21 GLU B 25 5 5 HELIX 19 19 GLU B 26 LYS B 33 1 8 HELIX 20 20 GLY B 35 GLN B 43 1 9 HELIX 21 21 ASN B 69 ASN B 90 1 22 HELIX 22 22 ASP B 100 SER B 102 5 3 HELIX 23 23 LEU B 103 HIS B 115 1 13 HELIX 24 24 ASN B 139 GLY B 142 5 4 HELIX 25 25 GLN B 143 LEU B 149 1 7 HELIX 26 26 LYS B 150 LYS B 153 5 4 HELIX 27 27 SER B 170 LYS B 172 5 3 HELIX 28 28 ASP B 183 GLY B 194 1 12 HELIX 29 29 SER B 199 GLY B 221 1 23 HELIX 30 30 ASP B 234 LEU B 236 5 3 HELIX 31 31 THR B 253 LYS B 266 1 14 HELIX 32 32 ASN B 279 GLY B 283 5 5 HELIX 33 33 THR B 285 PHE B 304 1 20
SHEET 1 A 8 ASP A 46 ASP A 52 0 SHEET 2 A 8 THR A 7 GLY A 12 1 N ILE A 10 O TYR A 50 SHEET 3 A 8 ILE A 93 LEU A 97 1 O ILE A 93 N THR A 7 SHEET 4 A 8 LEU A 270 MET A 276 1 O LEU A 273 N VAL A 96 SHEET 5 A 8 ILE A 227 ASP A 232 1 N PHE A 231 O MET A 276 SHEET 6 A 8 GLY A 119 VAL A 123 1 N GLY A 119 O HIS A 228 SHEET 7 A 8 ILE A 174 LEU A 179 1 O VAL A 175 N TRP A 122 SHEET 8 A 8 LYS A 196 SER A 199 1 O PHE A 198 N TYR A 176 SHEET 1 B 8 ASP B 46 ASP B 52 0 SHEET 2 B 8 THR B 7 GLY B 12 1 N ILE B 8 O ASP B 46 SHEET 3 B 8 ILE B 93 LEU B 97 1 O ILE B 93 N GLY B 9 SHEET 4 B 8 LEU B 270 MET B 276 1 O LEU B 273 N VAL B 96 SHEET 5 B 8 ILE B 227 ASP B 232 1 N ILE B 227 O SER B 271 SHEET 6 B 8 GLY B 119 VAL B 123 1 N VAL B 123 O ASP B 232 SHEET 7 B 8 ILE B 174 ILE B 177 1 O VAL B 175 N TRP B 122 SHEET 8 B 8 LYS B 196 PHE B 198 1 O LYS B 196 N TYR B 176
LINK OD2 ASP B 128 MN MN B 515 1555 1555 2.11 LINK OD2 ASP B 124 MN MN B 515 1555 1555 2.13 LINK OD2 ASP A 124 MN MN A 515 1555 1555 2.16 LINK OD2 ASP A 128 MN MN A 515 1555 1555 2.16 LINK OD1 ASP A 234 MN MN A 514 1555 1555 2.18 LINK ND1 HIS A 101 MN MN A 515 1555 1555 2.19 LINK OD1 ASP B 234 MN MN B 514 1555 1555 2.19 LINK MN MN B 514 O2 5AB B 552 1555 1555 2.23 LINK OD1 ASP B 124 MN MN B 514 1555 1555 2.23 LINK OD1 ASP A 124 MN MN A 514 1555 1555 2.25 LINK MN MN A 514 O2 5AB A 551 1555 1555 2.27 LINK ND1 HIS A 126 MN MN A 514 1555 1555 2.28 LINK ND1 HIS B 101 MN MN B 515 1555 1555 2.32 LINK ND1 HIS B 126 MN MN B 514 1555 1555 2.32 LINK OD2 ASP A 232 MN MN A 514 1555 1555 2.35 LINK OD2 ASP B 232 MN MN B 515 1555 1555 2.36 LINK OD2 ASP A 232 MN MN A 515 1555 1555 2.37 LINK MN MN A 515 O2 5AB A 551 1555 1555 2.37 LINK MN MN A 515 O3 5AB A 551 1555 1555 2.38 LINK MN MN B 515 O2 5AB B 552 1555 1555 2.38 LINK OD2 ASP B 232 MN MN B 514 1555 1555 2.40 LINK MN MN B 515 O3 5AB B 552 1555 1555 2.41 LINK OD2 ASP B 234 MN MN B 514 1555 1555 2.46 LINK OD2 ASP A 234 MN MN A 514 1555 1555 2.50 LINK MN MN A 514 O4 5AB A 551 1555 1555 2.75
CISPEP 1 GLY A 98 GLY A 99 0 0.68 CISPEP 2 GLY B 98 GLY B 99 0 2.04
SITE 1 AC1 6 ASP A 124 HIS A 126 ASP A 232 ASP A 234 SITE 2 AC1 6 MN A 515 5AB A 551 SITE 1 AC2 6 HIS A 101 ASP A 124 ASP A 128 ASP A 232 SITE 2 AC2 6 MN A 514 5AB A 551 SITE 1 AC3 20 HIS A 101 ASP A 124 HIS A 126 ASP A 128 SITE 2 AC3 20 ASN A 130 SER A 137 HIS A 141 ASP A 183 SITE 3 AC3 20 GLU A 186 ASP A 232 ASP A 234 GLU A 277 SITE 4 AC3 20 HOH A 337 HOH A 352 HOH A 413 HOH A 444 SITE 5 AC3 20 MN A 514 MN A 515 HOH A 582 HOH A 585 SITE 1 AC4 6 ASP B 124 HIS B 126 ASP B 232 ASP B 234 SITE 2 AC4 6 MN B 515 5AB B 552 SITE 1 AC5 6 HIS B 101 ASP B 124 ASP B 128 ASP B 232 SITE 2 AC5 6 MN B 514 5AB B 552 SITE 1 AC6 20 HIS B 101 ASP B 124 HIS B 126 ASP B 128 SITE 2 AC6 20 ASN B 130 SER B 137 HIS B 141 ASP B 183 SITE 3 AC6 20 GLU B 186 ASP B 232 ASP B 234 GLU B 277 SITE 4 AC6 20 HOH B 323 HOH B 368 HOH B 429 HOH B 454 SITE 5 AC6 20 HOH B 489 MN B 514 MN B 515 HOH B 530
CRYST1 90.337 90.337 69.329 90.00 90.00 120.00 P 3 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011070 0.006391 0.000000 0.00000
SCALE2 0.000000 0.012782 0.000000 0.00000
SCALE3 0.000000 0.000000 0.014424 0.00000