3SIW - Header Asymmetric Unit

HEADER TRANSFERASE 20-JUN-11 3SIW

TITLE CRYSTAL STRUCTURE OF NODZ ALPHA-1,6-FUCOSYLTRANSFERASE CO-CRYSTALLIZED TITLE 2 WITH GDP

COMPND MOL_ID: 1; COMPND 2 MOLECULE: NODULATION FUCOSYLTRANSFERASE NODZ; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NODZ ALFA1,6-FUCOSYLTRANSFERASE; COMPND 5 EC: 2.4.1.-; COMPND 6 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRADYRHIZOBIUM SP.; SOURCE 3 ORGANISM_TAXID: 133505; SOURCE 4 STRAIN: WM9; SOURCE 5 GENE: NODZ; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3A

KEYWDS FAMILY GT23 GLYCOSYLTRANSFERASE, GT-B FOLD, ALFA1,6- KEYWDS 2 FUCOSYLTRANSFERASE, NODULATION PROTEIN, CHITOOLIGOSACCHARIDE KEYWDS 3 FUCOSYLATION, NOD FACTOR BIOSYNTHESIS, NITROGEN FIXATION, LEGUME- KEYWDS 4 RHIZOBIUM SYMBIOSIS, TRANSFERASE

EXPDTA X-RAY DIFFRACTION

AUTHOR K.BRZEZINSKI,Z.DAUTER,M.JASKOLSKI

REVDAT 2 28-MAR-12 3SIW 1 JRNL REVDAT 1 08-FEB-12 3SIW 0

JRNL AUTH K.BRZEZINSKI,Z.DAUTER,M.JASKOLSKI JRNL TITL STRUCTURES OF NODZ ALPHA-1,6-FUCOSYLTRANSFERASE IN COMPLEX JRNL TITL 2 WITH GDP AND GDP-FUCOSE JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 68 160 2012 JRNL REFN ISSN 0907-4449 JRNL PMID 22281745 JRNL DOI 10.1107/S0907444911053157

REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.BRZEZINSKI,T.STEPKOWSKI,S.PANJIKAR,G.BUJACZ,M JASKOLSKI REMARK 1 TITL HIGH-RESOLUTION STRUCTURE OF NODZ FUCOSYLTRANSFERASE REMARK 1 TITL 2 INVOLVED IN THE BIOSYNTHESIS OF THE NODULATION FACTOR REMARK 1 REF ACTA BIOCHIM.POL. V. 54 537 2007 REMARK 1 REFN ISSN 0001-527X REMARK 1 REFERENCE 2 REMARK 1 AUTH H.Y.SUN,S.W.LIN,T.P.KO,C.L.LIU,H.J.WANG,C.H.LIN REMARK 1 TITL STRUCTURE AND MECHANISM OF HELICOBACTER PYLORI REMARK 1 TITL 2 FUCOSYLTRANSFERASE: A BASIS FOR LIPOPOLYSACCHARIDE VARIATION REMARK 1 TITL 3 AND INHIBITOR DESIGN REMARK 1 REF J.BIOL.CHEM. V. 282 9973 2007 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 3 REMARK 1 AUTH H.IHARA,Y.IKEDA,S.TOMA,X.WANG,T.SUZUKI,J.GU,E.MIYOSHI, REMARK 1 AUTH 2 T.TSUKIHARA,K.HONKE,A MATSUMOTO,A.NAKAGAWA,N.TANIGUCHI REMARK 1 TITL CRYSTAL STRUCTURE OF HUMAN ALPHA 1,6-FUCOSYLTRANSFERASE, REMARK 1 TITL 2 FUT8 REMARK 1 REF GLYCOBIOLOGY V. 17 455 2007 REMARK 1 REFN ISSN 0959-6658 REMARK 1 REFERENCE 4 REMARK 1 AUTH K.BRZEZINSKI,B.ROGOZINSKI,T.STEPKOWSKI,G.BUJACZ,M.JASKOLSKI REMARK 1 TITL CLONING, PURIFICATION, CRYSTALLIZATION AND PRELIMINARY REMARK 1 TITL 2 CRYSTALLOGRAPHIC STUDIES OF BRADYRHIZOBIUM REMARK 1 TITL 3 FUCOSYLTRANSFERASE NODZ REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 60 344 2004 REMARK 1 REFN ISSN 0907-4449 REMARK 1 REFERENCE 5 REMARK 1 AUTH C.QUINTO,A.H.WIJFJES,G.V.BLOEMBERG,L.BLOK-TIP, REMARK 1 AUTH 2 I.M.LOPEZ-LARA,B.J.LUGTENBERG,J.E.THOMAS-OATES,H.P.SPAINK REMARK 1 TITL BACTERIAL NODULATION PROTEIN NODZ IS A CHITIN REMARK 1 TITL 2 OLIGOSACCHARIDE FUCOSYLTRANSFERASE WHICH CAN ALSO RECOGNIZE REMARK 1 TITL 3 RELATED SUBSTRATES OF ANIMAL ORIGIN REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 94 4336 1997 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 6 REMARK 1 AUTH D.QUESADA-VINCENS,R.FELLAY,T.NASIM,V.VIPREY,U.BURGER, REMARK 1 AUTH 2 J.C.PROME,W.J.BROUGHTON,S.JABBOURI REMARK 1 TITL RHIZOBIUM SP. STRAIN NGR234 NODZ PROTEIN IS A REMARK 1 TITL 2 FUCOSYLTRANSFERASE REMARK 1 REF J. BACTERIOL. V. 179 5087 1997 REMARK 1 REFN ISSN 0021-9193

REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 30451 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : R-FREE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1103 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2130 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2333 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 199 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.40000 REMARK 3 B22 (A**2) : -1.40000 REMARK 3 B33 (A**2) : 2.10000 REMARK 3 B12 (A**2) : -0.70000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.132 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.085 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.680 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2546 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1813 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3465 ; 1.698 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4349 ; 0.959 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 300 ; 6.023 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 131 ;33.174 ;21.985 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 436 ;15.575 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;19.109 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 375 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2773 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 575 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1483 ; 1.018 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 581 ; 0.273 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2424 ; 1.846 ; 2.500 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1063 ; 3.819 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1034 ; 5.609 ;10.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 149 REMARK 3 ORIGIN FOR THE GROUP (A): 0.3689 54.1457 2.5525 REMARK 3 T TENSOR REMARK 3 T11: 0.0133 T22: 0.0351 REMARK 3 T33: 0.0218 T12: -0.0042 REMARK 3 T13: -0.0076 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 1.7310 L22: 3.6065 REMARK 3 L33: 1.6788 L12: -0.1998 REMARK 3 L13: -0.0516 L23: 1.0426 REMARK 3 S TENSOR REMARK 3 S11: 0.0489 S12: -0.1127 S13: 0.0828 REMARK 3 S21: 0.0423 S22: -0.0673 S23: 0.1310 REMARK 3 S31: 0.0270 S32: -0.0907 S33: 0.0184 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 150 A 318 REMARK 3 ORIGIN FOR THE GROUP (A): 16.2847 30.4238 2.4208 REMARK 3 T TENSOR REMARK 3 T11: 0.0416 T22: 0.0513 REMARK 3 T33: 0.0207 T12: -0.0061 REMARK 3 T13: -0.0225 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 2.4049 L22: 3.7637 REMARK 3 L33: 3.3190 L12: -1.7941 REMARK 3 L13: 0.6640 L23: -1.8371 REMARK 3 S TENSOR REMARK 3 S11: 0.0038 S12: -0.2348 S13: -0.0934 REMARK 3 S21: 0.2014 S22: 0.0025 S23: -0.0299 REMARK 3 S31: 0.0726 S32: -0.0152 S33: -0.0064 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGEN ATOMS WERE ADDED AT RIDING REMARK 3 POSITIONS, U VALUES: WITH TLS ADDED

REMARK 4 REMARK 4 3SIW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-11. REMARK 100 THE RCSB ID CODE IS RCSB066256.

REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE-CRYSTAL REMARK 200 SI(220) MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30783 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.800 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 9.40 REMARK 200 R MERGE FOR SHELL (I) : 0.70600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2HHC REMARK 200 REMARK 200 REMARK: NULL

REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 400 MM KH2PO4 100 MM MES PH 6.5 5 MM REMARK 280 MGCL2 2 MM GDP 1 MM CHITOPENTAOSE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K

REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.46667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.73333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.60000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 15.86667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 79.33333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 63.46667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 31.73333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 15.86667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 47.60000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 79.33333 REMARK 290 REMARK 290 REMARK: NULL

REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.

REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 61.95000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 107.30055 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 15.86667

REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 373 LIES ON A SPECIAL POSITION.

REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 179 REMARK 465 ASN A 180 REMARK 465 GLY A 181 REMARK 465 GLU A 182 REMARK 465 ASP A 183 REMARK 465 ILE A 184 REMARK 465 MET A 185 REMARK 465 GLU A 186 REMARK 465 HIS A 187 REMARK 465 ALA A 188 REMARK 465 PRO A 189 REMARK 465 TYR A 190 REMARK 465 TRP A 191 REMARK 465 ARG A 245 REMARK 465 PHE A 246 REMARK 465 GLN A 247 REMARK 465 ALA A 248 REMARK 465 ASP A 249 REMARK 465 ARG A 250 REMARK 465 ALA A 251 REMARK 465 GLY A 252 REMARK 465 PRO A 253 REMARK 465 LEU A 254 REMARK 465 HIS A 255 REMARK 465 SER A 256 REMARK 465 LEU A 305 REMARK 465 SER A 306 REMARK 465 GLU A 319 REMARK 465 HIS A 320 REMARK 465 PHE A 321 REMARK 465 ALA A 322 REMARK 465 ALA A 323 REMARK 465 SER A 324 REMARK 465 HIS A 325 REMARK 465 HIS A 326 REMARK 465 HIS A 327 REMARK 465 HIS A 328 REMARK 465 HIS A 329 REMARK 465 HIS A 330

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 13 -152.61 -102.27 REMARK 500 ASP A 72 -155.94 -129.73 REMARK 500 REMARK 500 REMARK: NULL

REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 503

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OCX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SE-MET FUCOSYLTRANSFERASE NODZ FROM REMARK 900 BRADYRHIZOBIUM REMARK 900 RELATED ID: 2HHC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FUCOSYLTRANSFERASE NODZ FROM REMARK 900 BRADYRHIZOBIUM REMARK 900 RELATED ID: 2HLH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FUCOSYLTRANSFERASE NODZ FROM REMARK 900 BRADYRHIZOBIUM REMARK 900 RELATED ID: 2NZW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ALPHA1,3-FUCOSYLTRANSFERASE REMARK 900 RELATED ID: 2NZX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ALPHA1,3-FUCOSYLTRANSFERASE WITH GDP REMARK 900 RELATED ID: 2NZY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ALPHA1,3-FUCOSYLTRANSFERASE WITH GDP- REMARK 900 FUCOSE REMARK 900 RELATED ID: 2DE0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN ALPHA 1,6-FUCOSYLTRANSFERASE, REMARK 900 FUT8 REMARK 900 RELATED ID: 3SIX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NODZ ALFA1,6-FUCOSYLTRANSFERASE SOAKED REMARK 900 WITH GDP-FUCOSE

DBREF 3SIW A 1 324 UNP Q9AQ17 Q9AQ17_BRASW 1 324

SEQADV 3SIW HIS A 325 UNP Q9AQ17 EXPRESSION TAG SEQADV 3SIW HIS A 326 UNP Q9AQ17 EXPRESSION TAG SEQADV 3SIW HIS A 327 UNP Q9AQ17 EXPRESSION TAG SEQADV 3SIW HIS A 328 UNP Q9AQ17 EXPRESSION TAG SEQADV 3SIW HIS A 329 UNP Q9AQ17 EXPRESSION TAG SEQADV 3SIW HIS A 330 UNP Q9AQ17 EXPRESSION TAG

SEQRES 1 A 330 MET THR LYS GLU ARG PHE VAL ILE SER ARG ARG ARG THR SEQRES 2 A 330 GLY PHE GLY ASP CYS LEU TRP SER LEU ALA SER ALA TRP SEQRES 3 A 330 SER TYR ALA GLN ARG THR GLY ARG THR LEU VAL ILE ASP SEQRES 4 A 330 TRP ARG GLY SER CYS TYR VAL GLU GLN PRO PHE SER ASN SEQRES 5 A 330 ALA PHE PRO ALA PHE PHE GLU PRO VAL GLU ASP ILE ALA SEQRES 6 A 330 GLY VAL PRO VAL ILE CYS ASP ASP ARG VAL ASN GLN LEU SEQRES 7 A 330 SER PHE PRO GLY PRO PHE PHE PRO ARG TRP TRP ASN ARG SEQRES 8 A 330 PRO SER ILE ASP CYS ILE ASN ARG PRO ASP GLU GLN ILE SEQRES 9 A 330 PHE ARG GLU ARG ASP GLU LEU THR GLU LEU PHE GLN ALA SEQRES 10 A 330 ARG GLU ASP SER GLU ALA ASN THR ILE VAL CYS ASP ALA SEQRES 11 A 330 CYS LEU MET TRP ARG CYS SER GLU GLU ALA GLU ARG LEU SEQRES 12 A 330 ILE PHE ARG ASN ILE LYS LEU ARG SER GLU ILE ARG ALA SEQRES 13 A 330 ARG ILE ASP ALA LEU TYR GLU GLU HIS PHE SER GLY HIS SEQRES 14 A 330 SER ILE ILE GLY VAL HIS VAL ARG HIS GLY ASN GLY GLU SEQRES 15 A 330 ASP ILE MET GLU HIS ALA PRO TYR TRP ALA ASP SER GLU SEQRES 16 A 330 LEU ALA LEU HIS GLN VAL CYS MET ALA ILE ARG LYS ALA SEQRES 17 A 330 LYS ALA LEU SER TYR PRO LYS PRO VAL LYS VAL PHE LEU SEQRES 18 A 330 CYS THR ASP SER ALA GLN VAL LEU ASP GLN VAL SER GLY SEQRES 19 A 330 LEU PHE PRO ASP VAL PHE ALA VAL PRO LYS ARG PHE GLN SEQRES 20 A 330 ALA ASP ARG ALA GLY PRO LEU HIS SER ALA GLU MET GLY SEQRES 21 A 330 ILE GLU GLY GLY ALA SER ALA LEU ILE ASP MET TYR LEU SEQRES 22 A 330 LEU ALA ARG CYS ALA THR VAL ILE ARG PHE PRO PRO THR SEQRES 23 A 330 SER ALA PHE THR ARG TYR ALA ARG LEU LEU VAL PRO ARG SEQRES 24 A 330 ILE ILE GLU PHE ASP LEU SER ASN PRO GLY HIS LEU THR SEQRES 25 A 330 MET ILE ASP ASN PRO TYR GLU HIS PHE ALA ALA SER HIS SEQRES 26 A 330 HIS HIS HIS HIS HIS

HET GDP A 400 28 HET PO4 A 501 5 HET PO4 A 502 5 HET PO4 A 503 5

HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM PO4 PHOSPHATE ION

FORMUL 2 GDP C10 H15 N5 O11 P2 FORMUL 3 PO4 3(O4 P 3-) FORMUL 6 HOH *199(H2 O)

HELIX 1 1 GLY A 14 GLY A 33 1 20 HELIX 2 2 ALA A 53 PHE A 58 1 6 HELIX 3 3 ASP A 72 GLN A 77 5 6 HELIX 4 4 PRO A 86 ARG A 91 5 6 HELIX 5 5 PRO A 92 ILE A 97 5 6 HELIX 6 6 PRO A 100 ALA A 117 1 18 HELIX 7 7 SER A 137 ILE A 148 1 12 HELIX 8 8 ARG A 151 PHE A 166 1 16 HELIX 9 9 ALA A 192 ALA A 210 1 19 HELIX 10 10 SER A 225 PHE A 236 1 12 HELIX 11 11 ALA A 257 ALA A 275 1 19 HELIX 12 12 SER A 287 PHE A 289 5 3 HELIX 13 13 THR A 290 VAL A 297 1 8

SHEET 1 A 6 ASP A 63 ILE A 64 0 SHEET 2 A 6 VAL A 67 ILE A 70 -1 O VAL A 67 N ILE A 64 SHEET 3 A 6 THR A 35 ASP A 39 1 N ILE A 38 O ILE A 70 SHEET 4 A 6 PHE A 6 ARG A 10 1 N SER A 9 O VAL A 37 SHEET 5 A 6 THR A 125 CYS A 128 1 O ILE A 126 N ILE A 8 SHEET 6 A 6 PHE A 84 PHE A 85 1 N PHE A 85 O VAL A 127 SHEET 1 B 6 VAL A 239 PHE A 240 0 SHEET 2 B 6 VAL A 217 THR A 223 1 N VAL A 219 O PHE A 240 SHEET 3 B 6 SER A 170 VAL A 176 1 N VAL A 174 O CYS A 222 SHEET 4 B 6 THR A 279 PHE A 283 1 O ILE A 281 N GLY A 173 SHEET 5 B 6 ARG A 299 PHE A 303 1 O ILE A 301 N VAL A 280 SHEET 6 B 6 LEU A 311 ASP A 315 -1 O ILE A 314 N ILE A 300

CISPEP 1 GLY A 82 PRO A 83 0 -3.81 CISPEP 2 PHE A 85 PRO A 86 0 -3.40 CISPEP 3 PHE A 283 PRO A 284 0 0.82 CISPEP 4 PRO A 317 TYR A 318 0 26.15

SITE 1 AC1 20 GLY A 14 PHE A 15 GLY A 16 ASP A 17 SITE 2 AC1 20 TYR A 45 HIS A 175 ARG A 177 CYS A 222 SITE 3 AC1 20 THR A 223 ASP A 224 SER A 266 ALA A 267 SITE 4 AC1 20 ASP A 270 SER A 287 ALA A 288 PHE A 289 SITE 5 AC1 20 HOH A 350 HOH A 392 HOH A 434 HOH A 461 SITE 1 AC2 4 GLU A 59 ARG A 151 SER A 152 GLU A 153 SITE 1 AC3 5 ARG A 282 ARG A 294 GLU A 302 ILE A 314 SITE 2 AC3 5 HOH A 436 SITE 1 AC4 7 PRO A 86 ARG A 87 TRP A 88 GLN A 103 SITE 2 AC4 7 ARG A 106 GLU A 110 HOH A 510

CRYST1 123.900 123.900 95.200 90.00 90.00 120.00 P 65 2 2 12

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 0.008068 0.004658 0.000000 0.00000

SCALE2 0.000000 0.009316 0.000000 0.00000

SCALE3 0.000000 0.000000 0.010507 0.00000