10 20 30 40 50 60 70 80 3RLA - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 07-MAY-97 3RLA
TITLE ALTERING THE BINUCLEAR MANGANESE CLUSTER OF ARGINASE TITLE 2 DIMINISHES THERMOSTABILITY AND CATALYTIC FUNCTION
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGINASE; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 3.5.3.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 CELL_LINE: BL21; SOURCE 6 ORGAN: LIVER; SOURCE 7 CELLULAR_LOCATION: CYTOPLASM; SOURCE 8 GENE: PARGR-2; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PRSET C; SOURCE 14 EXPRESSION_SYSTEM_GENE: PARG-X
KEYWDS HYDROLASE, UREA CYCLE, ARGININE METABOLISM
EXPDTA X-RAY DIFFRACTION
AUTHOR L.R.SCOLNICK,Z.F.KANYO,D.W.CHRISTIANSON
REVDAT 2 24-FEB-09 3RLA 1 VERSN REVDAT 1 13-MAY-98 3RLA 0
JRNL AUTH L.R.SCOLNICK,Z.F.KANYO,R.C.CAVALLI,D.E.ASH, JRNL AUTH 2 D.W.CHRISTIANSON JRNL TITL ALTERING THE BINUCLEAR MANGANESE CLUSTER OF JRNL TITL 2 ARGINASE DIMINISHES THERMOSTABILITY AND CATALYTIC JRNL TITL 3 FUNCTION. JRNL REF BIOCHEMISTRY V. 36 10558 1997 JRNL REFN ISSN 0006-2960 JRNL PMID 9265637 JRNL DOI 10.1021/BI970800V
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.54 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.1000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 74.0 REMARK 3 NUMBER OF REFLECTIONS : 24212 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 694 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.54 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.65 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3245 REMARK 3 BIN R VALUE (WORKING SET) : 0.4200 REMARK 3 BIN FREE R VALUE : 0.5000 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 2.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 102 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.005 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3230 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 20 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : 0.25 REMARK 3 LOW RESOLUTION CUTOFF (A) : 12.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.70 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.60 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : RESTRAINTS REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : PARAM-LRS.MAY96 REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH-LRS.MAY96 REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT CORRECTION USED
REMARK 4 REMARK 4 3RLA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : JAN-95 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : YALE MIRRORS REMARK 200 OPTICS : YALE REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26381 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 8.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 74.0 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : 0.10500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : 0.40000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: RAT LIVER ARGINASE REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12 - 18% PEG 8000, 50 MM BICINE PH REMARK 280 = 8.5, 0.05% AZIDE, 1 MM MNCL2
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.93333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.46667 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 LYS A 4 REMARK 465 PRO A 5 REMARK 465 LYS A 320 REMARK 465 PRO A 321 REMARK 465 PRO A 322 REMARK 465 LYS A 323 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 SER B 3 REMARK 465 LYS B 4 REMARK 465 PRO B 5 REMARK 465 LYS B 320 REMARK 465 PRO B 321 REMARK 465 PRO B 322 REMARK 465 LYS B 323 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 SER C 3 REMARK 465 LYS C 4 REMARK 465 PRO C 5 REMARK 465 LYS C 320 REMARK 465 PRO C 321 REMARK 465 PRO C 322 REMARK 465 LYS C 323
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 101 CB CG OD1 ND2 REMARK 470 LEU A 319 O REMARK 470 ASN B 101 CB CG OD1 ND2 REMARK 470 LEU B 319 O REMARK 470 ASN C 101 CB CG OD1 ND2 REMARK 470 LEU C 319 O
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 273 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 16 14.21 -146.99 REMARK 500 ARG A 21 105.68 -57.49 REMARK 500 GLU A 42 5.58 -67.74 REMARK 500 THR A 43 -167.65 -100.36 REMARK 500 GLN A 65 -75.42 67.36 REMARK 500 ASN A 90 20.47 -79.54 REMARK 500 PRO A 157 -159.88 -54.15 REMARK 500 PRO A 167 108.44 -42.93 REMARK 500 ARG A 180 8.80 -153.20 REMARK 500 ASP A 181 71.09 -153.29 REMARK 500 PRO B 14 57.97 -68.53 REMARK 500 SER B 16 13.61 -146.26 REMARK 500 GLU B 42 3.90 -68.08 REMARK 500 GLN B 65 -70.84 65.61 REMARK 500 ASP B 117 31.34 -96.86 REMARK 500 PRO B 157 -160.98 -50.41 REMARK 500 PRO B 167 105.16 -44.79 REMARK 500 ARG B 180 0.82 -152.29 REMARK 500 SER C 16 11.90 -141.28 REMARK 500 GLN C 65 -72.85 69.11 REMARK 500 ASN C 90 20.39 -76.63 REMARK 500 ILE C 105 -71.34 -54.85 REMARK 500 PRO C 157 -160.38 -51.18 REMARK 500 PRO C 160 106.86 -59.54 REMARK 500 PRO C 167 105.49 -42.05 REMARK 500 ARG C 180 4.36 -151.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR C 176 0.07 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 500 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 124 OD2 REMARK 620 2 ASP A 128 OD2 99.0 REMARK 620 3 ASP A 232 OD2 84.4 145.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 124 OD1 REMARK 620 2 ASP A 232 OD2 82.3 REMARK 620 3 ASP A 234 OD2 125.3 91.2 REMARK 620 4 HIS A 126 ND1 97.9 176.2 91.8 REMARK 620 5 ASP A 234 OD1 73.9 93.6 52.3 90.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 124 OD2 REMARK 620 2 ASP B 128 OD2 95.4 REMARK 620 3 ASP B 232 OD2 76.8 136.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 503 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 124 OD1 REMARK 620 2 HIS B 126 ND1 94.9 REMARK 620 3 ASP B 232 OD2 76.9 170.3 REMARK 620 4 ASP B 234 OD2 123.0 96.3 92.6 REMARK 620 5 ASP B 234 OD1 66.9 94.4 87.1 56.6 REMARK 620 6 HOH B 504 O 135.9 98.4 84.5 97.2 152.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 504 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 124 OD2 REMARK 620 2 ASP C 128 OD2 97.2 REMARK 620 3 ASP C 232 OD2 77.9 129.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 505 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 124 OD1 REMARK 620 2 HIS C 126 ND1 104.3 REMARK 620 3 ASP C 234 OD2 118.5 100.6 REMARK 620 4 ASP C 234 OD1 67.2 101.7 53.0 REMARK 620 5 ASP C 232 OD2 79.4 173.6 81.8 84.5 REMARK 620 N 1 2 3 4
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: MNA REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: BI-MANGANESE NUCLEAR BINDING SITE. REMARK 800 SITE_IDENTIFIER: MNB REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: BI-MANGANESE NUCLEAR BINDING SITE. REMARK 800 SITE_IDENTIFIER: MNC REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: BI-MANGANESE NUCLEAR BINDING SITE. REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 500 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 501 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 502 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 503 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 504 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 505
DBREF 3RLA A 1 323 UNP P07824 ARGI1_RAT 1 323 DBREF 3RLA B 1 323 UNP P07824 ARGI1_RAT 1 323 DBREF 3RLA C 1 323 UNP P07824 ARGI1_RAT 1 323
SEQADV 3RLA ASN A 101 UNP P07824 HIS 101 ENGINEERED SEQADV 3RLA ASN B 101 UNP P07824 HIS 101 ENGINEERED SEQADV 3RLA ASN C 101 UNP P07824 HIS 101 ENGINEERED
SEQRES 1 A 323 MET SER SER LYS PRO LYS PRO ILE GLU ILE ILE GLY ALA SEQRES 2 A 323 PRO PHE SER LYS GLY GLN PRO ARG GLY GLY VAL GLU LYS SEQRES 3 A 323 GLY PRO ALA ALA LEU ARG LYS ALA GLY LEU VAL GLU LYS SEQRES 4 A 323 LEU LYS GLU THR GLU TYR ASN VAL ARG ASP HIS GLY ASP SEQRES 5 A 323 LEU ALA PHE VAL ASP VAL PRO ASN ASP SER PRO PHE GLN SEQRES 6 A 323 ILE VAL LYS ASN PRO ARG SER VAL GLY LYS ALA ASN GLU SEQRES 7 A 323 GLN LEU ALA ALA VAL VAL ALA GLU THR GLN LYS ASN GLY SEQRES 8 A 323 THR ILE SER VAL VAL LEU GLY GLY ASP ASN SER MET ALA SEQRES 9 A 323 ILE GLY SER ILE SER GLY HIS ALA ARG VAL HIS PRO ASP SEQRES 10 A 323 LEU CYS VAL ILE TRP VAL ASP ALA HIS THR ASP ILE ASN SEQRES 11 A 323 THR PRO LEU THR THR SER SER GLY ASN LEU HIS GLY GLN SEQRES 12 A 323 PRO VAL ALA PHE LEU LEU LYS GLU LEU LYS GLY LYS PHE SEQRES 13 A 323 PRO ASP VAL PRO GLY PHE SER TRP VAL THR PRO CYS ILE SEQRES 14 A 323 SER ALA LYS ASP ILE VAL TYR ILE GLY LEU ARG ASP VAL SEQRES 15 A 323 ASP PRO GLY GLU HIS TYR ILE ILE LYS THR LEU GLY ILE SEQRES 16 A 323 LYS TYR PHE SER MET THR GLU VAL ASP LYS LEU GLY ILE SEQRES 17 A 323 GLY LYS VAL MET GLU GLU THR PHE SER TYR LEU LEU GLY SEQRES 18 A 323 ARG LYS LYS ARG PRO ILE HIS LEU SER PHE ASP VAL ASP SEQRES 19 A 323 GLY LEU ASP PRO VAL PHE THR PRO ALA THR GLY THR PRO SEQRES 20 A 323 VAL VAL GLY GLY LEU SER TYR ARG GLU GLY LEU TYR ILE SEQRES 21 A 323 THR GLU GLU ILE TYR LYS THR GLY LEU LEU SER GLY LEU SEQRES 22 A 323 ASP ILE MET GLU VAL ASN PRO THR LEU GLY LYS THR PRO SEQRES 23 A 323 GLU GLU VAL THR ARG THR VAL ASN THR ALA VAL ALA LEU SEQRES 24 A 323 THR LEU SER CYS PHE GLY THR LYS ARG GLU GLY ASN HIS SEQRES 25 A 323 LYS PRO GLU THR ASP TYR LEU LYS PRO PRO LYS SEQRES 1 B 323 MET SER SER LYS PRO LYS PRO ILE GLU ILE ILE GLY ALA SEQRES 2 B 323 PRO PHE SER LYS GLY GLN PRO ARG GLY GLY VAL GLU LYS SEQRES 3 B 323 GLY PRO ALA ALA LEU ARG LYS ALA GLY LEU VAL GLU LYS SEQRES 4 B 323 LEU LYS GLU THR GLU TYR ASN VAL ARG ASP HIS GLY ASP SEQRES 5 B 323 LEU ALA PHE VAL ASP VAL PRO ASN ASP SER PRO PHE GLN SEQRES 6 B 323 ILE VAL LYS ASN PRO ARG SER VAL GLY LYS ALA ASN GLU SEQRES 7 B 323 GLN LEU ALA ALA VAL VAL ALA GLU THR GLN LYS ASN GLY SEQRES 8 B 323 THR ILE SER VAL VAL LEU GLY GLY ASP ASN SER MET ALA SEQRES 9 B 323 ILE GLY SER ILE SER GLY HIS ALA ARG VAL HIS PRO ASP SEQRES 10 B 323 LEU CYS VAL ILE TRP VAL ASP ALA HIS THR ASP ILE ASN SEQRES 11 B 323 THR PRO LEU THR THR SER SER GLY ASN LEU HIS GLY GLN SEQRES 12 B 323 PRO VAL ALA PHE LEU LEU LYS GLU LEU LYS GLY LYS PHE SEQRES 13 B 323 PRO ASP VAL PRO GLY PHE SER TRP VAL THR PRO CYS ILE SEQRES 14 B 323 SER ALA LYS ASP ILE VAL TYR ILE GLY LEU ARG ASP VAL SEQRES 15 B 323 ASP PRO GLY GLU HIS TYR ILE ILE LYS THR LEU GLY ILE SEQRES 16 B 323 LYS TYR PHE SER MET THR GLU VAL ASP LYS LEU GLY ILE SEQRES 17 B 323 GLY LYS VAL MET GLU GLU THR PHE SER TYR LEU LEU GLY SEQRES 18 B 323 ARG LYS LYS ARG PRO ILE HIS LEU SER PHE ASP VAL ASP SEQRES 19 B 323 GLY LEU ASP PRO VAL PHE THR PRO ALA THR GLY THR PRO SEQRES 20 B 323 VAL VAL GLY GLY LEU SER TYR ARG GLU GLY LEU TYR ILE SEQRES 21 B 323 THR GLU GLU ILE TYR LYS THR GLY LEU LEU SER GLY LEU SEQRES 22 B 323 ASP ILE MET GLU VAL ASN PRO THR LEU GLY LYS THR PRO SEQRES 23 B 323 GLU GLU VAL THR ARG THR VAL ASN THR ALA VAL ALA LEU SEQRES 24 B 323 THR LEU SER CYS PHE GLY THR LYS ARG GLU GLY ASN HIS SEQRES 25 B 323 LYS PRO GLU THR ASP TYR LEU LYS PRO PRO LYS SEQRES 1 C 323 MET SER SER LYS PRO LYS PRO ILE GLU ILE ILE GLY ALA SEQRES 2 C 323 PRO PHE SER LYS GLY GLN PRO ARG GLY GLY VAL GLU LYS SEQRES 3 C 323 GLY PRO ALA ALA LEU ARG LYS ALA GLY LEU VAL GLU LYS SEQRES 4 C 323 LEU LYS GLU THR GLU TYR ASN VAL ARG ASP HIS GLY ASP SEQRES 5 C 323 LEU ALA PHE VAL ASP VAL PRO ASN ASP SER PRO PHE GLN SEQRES 6 C 323 ILE VAL LYS ASN PRO ARG SER VAL GLY LYS ALA ASN GLU SEQRES 7 C 323 GLN LEU ALA ALA VAL VAL ALA GLU THR GLN LYS ASN GLY SEQRES 8 C 323 THR ILE SER VAL VAL LEU GLY GLY ASP ASN SER MET ALA SEQRES 9 C 323 ILE GLY SER ILE SER GLY HIS ALA ARG VAL HIS PRO ASP SEQRES 10 C 323 LEU CYS VAL ILE TRP VAL ASP ALA HIS THR ASP ILE ASN SEQRES 11 C 323 THR PRO LEU THR THR SER SER GLY ASN LEU HIS GLY GLN SEQRES 12 C 323 PRO VAL ALA PHE LEU LEU LYS GLU LEU LYS GLY LYS PHE SEQRES 13 C 323 PRO ASP VAL PRO GLY PHE SER TRP VAL THR PRO CYS ILE SEQRES 14 C 323 SER ALA LYS ASP ILE VAL TYR ILE GLY LEU ARG ASP VAL SEQRES 15 C 323 ASP PRO GLY GLU HIS TYR ILE ILE LYS THR LEU GLY ILE SEQRES 16 C 323 LYS TYR PHE SER MET THR GLU VAL ASP LYS LEU GLY ILE SEQRES 17 C 323 GLY LYS VAL MET GLU GLU THR PHE SER TYR LEU LEU GLY SEQRES 18 C 323 ARG LYS LYS ARG PRO ILE HIS LEU SER PHE ASP VAL ASP SEQRES 19 C 323 GLY LEU ASP PRO VAL PHE THR PRO ALA THR GLY THR PRO SEQRES 20 C 323 VAL VAL GLY GLY LEU SER TYR ARG GLU GLY LEU TYR ILE SEQRES 21 C 323 THR GLU GLU ILE TYR LYS THR GLY LEU LEU SER GLY LEU SEQRES 22 C 323 ASP ILE MET GLU VAL ASN PRO THR LEU GLY LYS THR PRO SEQRES 23 C 323 GLU GLU VAL THR ARG THR VAL ASN THR ALA VAL ALA LEU SEQRES 24 C 323 THR LEU SER CYS PHE GLY THR LYS ARG GLU GLY ASN HIS SEQRES 25 C 323 LYS PRO GLU THR ASP TYR LEU LYS PRO PRO LYS
HET MN A 500 1 HET MN A 501 1 HET MN B 502 1 HET MN B 503 1 HET MN C 504 1 HET MN C 505 1
HETNAM MN MANGANESE (II) ION
FORMUL 4 MN 6(MN 2+) FORMUL 10 HOH *39(H2 O)
HELIX 1 1 VAL A 24 LYS A 33 5 10 HELIX 2 2 LEU A 36 LYS A 41 1 6 HELIX 3 3 PRO A 70 LYS A 89 1 20 HELIX 4 4 ASN A 101 ALA A 112 5 12 HELIX 5 5 LEU A 140 GLY A 142 5 3 HELIX 6 6 PRO A 144 PHE A 147 5 4 HELIX 7 7 ALA A 171 ASP A 173 5 3 HELIX 8 8 PRO A 184 THR A 192 1 9 HELIX 9 9 MET A 200 LEU A 206 1 7 HELIX 10 10 ILE A 208 LEU A 220 1 13 HELIX 11 11 VAL A 233 GLY A 235 5 3 HELIX 12 12 TYR A 254 THR A 267 1 14 HELIX 13 13 PRO A 280 LEU A 282 5 3 HELIX 14 14 PRO A 286 CYS A 303 1 18 HELIX 15 15 VAL B 24 LYS B 33 5 10 HELIX 16 16 LEU B 36 LYS B 41 1 6 HELIX 17 17 PRO B 70 LYS B 89 1 20 HELIX 18 18 ASN B 101 ALA B 112 5 12 HELIX 19 19 LEU B 140 GLY B 142 5 3 HELIX 20 20 PRO B 144 LEU B 148 1 5 HELIX 21 21 ALA B 171 ASP B 173 5 3 HELIX 22 22 PRO B 184 THR B 192 1 9 HELIX 23 23 MET B 200 LEU B 220 1 21 HELIX 24 24 VAL B 233 GLY B 235 5 3 HELIX 25 25 TYR B 254 THR B 267 1 14 HELIX 26 26 PRO B 280 LEU B 282 5 3 HELIX 27 27 PRO B 286 CYS B 303 1 18 HELIX 28 28 VAL C 24 LYS C 33 5 10 HELIX 29 29 LEU C 36 LYS C 41 1 6 HELIX 30 30 PRO C 70 LYS C 89 1 20 HELIX 31 31 ASN C 101 VAL C 114 5 14 HELIX 32 32 LEU C 140 GLY C 142 5 3 HELIX 33 33 PRO C 144 PHE C 147 5 4 HELIX 34 34 ALA C 171 ASP C 173 5 3 HELIX 35 35 PRO C 184 THR C 192 1 9 HELIX 36 36 MET C 200 LEU C 220 1 21 HELIX 37 37 VAL C 233 GLY C 235 5 3 HELIX 38 38 TYR C 254 THR C 267 1 14 HELIX 39 39 PRO C 280 LEU C 282 5 3 HELIX 40 40 PRO C 286 CYS C 303 1 18
SHEET 1 A 8 ASN A 46 ASP A 49 0 SHEET 2 A 8 PRO A 7 GLY A 12 1 N ILE A 8 O ASN A 46 SHEET 3 A 8 THR A 92 LEU A 97 1 N ILE A 93 O PRO A 7 SHEET 4 A 8 LEU A 270 MET A 276 1 N LEU A 273 O SER A 94 SHEET 5 A 8 ILE A 227 ASP A 232 1 N ILE A 227 O SER A 271 SHEET 6 A 8 CYS A 119 VAL A 123 1 N CYS A 119 O HIS A 228 SHEET 7 A 8 ILE A 174 LEU A 179 1 N VAL A 175 O VAL A 120 SHEET 8 A 8 LYS A 196 SER A 199 1 N LYS A 196 O TYR A 176 SHEET 1 B 8 ASN B 46 ASP B 49 0 SHEET 2 B 8 PRO B 7 GLY B 12 1 N ILE B 8 O ASN B 46 SHEET 3 B 8 ILE B 93 LEU B 97 1 N ILE B 93 O GLU B 9 SHEET 4 B 8 LEU B 270 MET B 276 1 N LEU B 273 O SER B 94 SHEET 5 B 8 ILE B 227 ASP B 232 1 N ILE B 227 O SER B 271 SHEET 6 B 8 CYS B 119 VAL B 123 1 N CYS B 119 O HIS B 228 SHEET 7 B 8 ILE B 174 LEU B 179 1 N VAL B 175 O VAL B 120 SHEET 8 B 8 LYS B 196 SER B 199 1 N LYS B 196 O TYR B 176 SHEET 1 C 8 VAL C 47 ASP C 49 0 SHEET 2 C 8 PRO C 7 GLY C 12 1 N ILE C 8 O ARG C 48 SHEET 3 C 8 THR C 92 LEU C 97 1 N ILE C 93 O PRO C 7 SHEET 4 C 8 LEU C 270 MET C 276 1 N LEU C 273 O SER C 94 SHEET 5 C 8 ILE C 227 ASP C 232 1 N ILE C 227 O SER C 271 SHEET 6 C 8 CYS C 119 VAL C 123 1 N CYS C 119 O HIS C 228 SHEET 7 C 8 ILE C 174 LEU C 179 1 N VAL C 175 O VAL C 120 SHEET 8 C 8 LYS C 196 SER C 199 1 N LYS C 196 O TYR C 176
LINK MN MN A 500 OD2 ASP A 124 1555 1555 1.92 LINK MN MN A 500 OD2 ASP A 128 1555 1555 2.07 LINK MN MN A 500 OD2 ASP A 232 1555 1555 2.32 LINK MN MN A 501 OD1 ASP A 124 1555 1555 2.12 LINK MN MN A 501 OD2 ASP A 232 1555 1555 2.32 LINK MN MN A 501 OD2 ASP A 234 1555 1555 2.24 LINK MN MN B 502 OD2 ASP B 124 1555 1555 2.02 LINK MN MN B 502 OD2 ASP B 128 1555 1555 2.15 LINK MN MN B 503 OD1 ASP B 124 1555 1555 2.31 LINK MN MN B 503 ND1 HIS B 126 1555 1555 2.37 LINK MN MN B 503 OD2 ASP B 232 1555 1555 2.29 LINK MN MN B 503 OD2 ASP B 234 1555 1555 2.11 LINK MN MN C 504 OD2 ASP C 124 1555 1555 2.16 LINK MN MN C 504 OD2 ASP C 128 1555 1555 2.13 LINK MN MN C 505 OD1 ASP C 124 1555 1555 2.31 LINK MN MN C 505 ND1 HIS C 126 1555 1555 2.28 LINK MN MN C 505 OD2 ASP C 234 1555 1555 2.29 LINK MN MN A 501 ND1 HIS A 126 1555 1555 2.53 LINK MN MN A 501 OD1 ASP A 234 1555 1555 2.62 LINK MN MN B 502 OD2 ASP B 232 1555 1555 2.51 LINK MN MN B 503 OD1 ASP B 234 1555 1555 2.50 LINK MN MN B 503 O HOH B 504 1555 1555 2.57 LINK MN MN C 504 OD2 ASP C 232 1555 1555 2.76 LINK MN MN C 505 OD1 ASP C 234 1555 1555 2.60 LINK MN MN C 505 OD2 ASP C 232 1555 1555 2.65
CISPEP 1 GLY A 98 GLY A 99 0 -0.02 CISPEP 2 GLY B 98 GLY B 99 0 0.22 CISPEP 3 GLY C 98 GLY C 99 0 0.16
SITE 1 MNA 6 ASN A 101 ASP A 124 HIS A 126 ASP A 128 SITE 2 MNA 6 ASP A 232 ASP A 234 SITE 1 MNB 6 ASN B 101 ASP B 124 HIS B 126 ASP B 128 SITE 2 MNB 6 ASP B 232 ASP B 234 SITE 1 MNC 6 ASN C 101 ASP C 124 HIS C 126 ASP C 128 SITE 2 MNC 6 ASP C 232 ASP C 234 SITE 1 AC1 4 ASP A 124 ASP A 128 ASP A 232 MN A 501 SITE 1 AC2 5 ASP A 124 HIS A 126 ASP A 232 ASP A 234 SITE 2 AC2 5 MN A 500 SITE 1 AC3 4 TRP B 122 ASP B 124 ASP B 128 ASP B 232 SITE 1 AC4 5 ASP B 124 HIS B 126 ASP B 232 ASP B 234 SITE 2 AC4 5 HOH B 504 SITE 1 AC5 4 TRP C 122 ASP C 124 ASP C 128 ASP C 232 SITE 1 AC6 4 ASP C 124 HIS C 126 ASP C 232 ASP C 234
CRYST1 89.000 89.000 115.400 90.00 90.00 120.00 P 32 9
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011236 0.006487 0.000000 0.00000
SCALE2 0.000000 0.012974 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008666 0.00000
MTRIX1 1 -0.420945 -0.852193 0.310761 -0.01375 1
MTRIX2 1 0.844137 -0.493426 -0.209675 51.70329 1
MTRIX3 1 0.332021 0.174063 0.927073 0.59379 1
MTRIX1 2 -0.439303 0.845288 0.304141 -44.10607 1
MTRIX2 2 -0.847093 -0.502493 0.173016 25.85707 1
MTRIX3 2 0.299077 -0.181630 0.936784 9.31568 1