3QVR - Header Asymmetric Unit

HEADER OXIDOREDUCTASE 25-FEB-11 3QVR

TITLE CRYSTAL STRUCTURE OF GLUCOSE OXIDASE FOR SPACE GROUP P3121 AT 1.3 A TITLE 2 RESOLUTION.

COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE OXIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-D-GLUCOSE:OXYGEN 1-OXIDO-REDUCTASE, GLUCOSE OXYHYDRASE, COMPND 5 GOD; COMPND 6 EC: 1.1.3.4; COMPND 7 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS NIGER; SOURCE 3 ORGANISM_TAXID: 5061; SOURCE 4 GENE: GOX

KEYWDS OXIDOREDUCTASE

EXPDTA X-RAY DIFFRACTION

AUTHOR P.KOMMOJU,Z.CHEN,R.C.BRUCKNER,F.S.MATHEWS,M.S.JORNS

REVDAT 3 05-OCT-11 3QVR 1 LINK REVDAT 2 13-JUL-11 3QVR 1 JRNL REVDAT 1 01-JUN-11 3QVR 0

JRNL AUTH P.R.KOMMOJU,Z.W.CHEN,R.C.BRUCKNER,F.S.MATHEWS,M.S.JORNS JRNL TITL PROBING OXYGEN ACTIVATION SITES IN TWO FLAVOPROTEIN OXIDASES JRNL TITL 2 USING CHLORIDE AS AN OXYGEN SURROGATE. JRNL REF BIOCHEMISTRY V. 50 5521 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 21568312 JRNL DOI 10.1021/BI200388G

REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.WOHLFAHRT,S.WITT,J.HENDLE,D.SCHOMBURG,H.M.KALISZ,H.J.HECHT REMARK 1 TITL 1.8 AND 1.9 A RESOLUTION STRUCTURES OF THE PENICILLIUM REMARK 1 TITL 2 AMAGASAKIENSE AND ASPERGILLUS NIGER GLUCOSE OXIDASES AS A REMARK 1 TITL 3 BASIS FOR MODELLING SUBSTRATE COMPLEXES. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 55 969 1999 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 10216293

REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 185564.090 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 132723 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 6736 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.002 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.38 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 20565 REMARK 3 BIN R VALUE (WORKING SET) : 0.3180 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 1072 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4452 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 157 REMARK 3 SOLVENT ATOMS : 1010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.96000 REMARK 3 B22 (A**2) : 0.96000 REMARK 3 B33 (A**2) : -1.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.15 REMARK 3 ESD FROM SIGMAA (A) : 0.20 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.16 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.21 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 1.60 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.13 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.290 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.670 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.160 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.020 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 71.08 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 3QVR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-11. REMARK 100 THE RCSB ID CODE IS RCSB064164.

REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : APS BIOCARS 14-BM-C REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 132764 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 29.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.32100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP FROM CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 1CF3 REMARK 200 REMARK 200 REMARK: NULL

REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM CACL2 AND 20% PEG 3350, PH 5.1, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K

REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.41733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 142.83467 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 142.83467 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 71.41733 REMARK 290 REMARK 290 REMARK: NULL

REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.

REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000

REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1286 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1190 LIES ON A SPECIAL POSITION.

REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 ASN A 2

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 533 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 204 4.88 -68.55 REMARK 500 HIS A 283 -68.93 -105.58 REMARK 500 ALA A 288 39.61 -143.67 REMARK 500 THR A 417 -108.04 -117.27 REMARK 500 HIS A 510 55.79 -145.37 REMARK 500 ASP A 548 -162.50 -113.93 REMARK 500 REMARK 500 REMARK: NULL

REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1594 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH A1634 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A1670 DISTANCE = 5.28 ANGSTROMS REMARK 525 HOH A1741 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A1819 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A1828 DISTANCE = 7.71 ANGSTROMS REMARK 525 HOH A1833 DISTANCE = 6.93 ANGSTROMS

REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BMA A 613 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN A 615 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN A 616 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 701

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1CF3 RELATED DB: PDB REMARK 900 1.8 AND 1.9 A RESOLUTION STRUCTURES OF THE PENICILLIUM REMARK 900 AMAGASAKIENSE AND ASPERGILLUS NIGER GLUCOSE OXIDASES AS A REMARK 900 BASIS FOR MODELLING SUBSTRATE COMPLEXES. REMARK 900 RELATED ID: 3QVP RELATED DB: PDB

DBREF 3QVR A 1 583 UNP P13006 GOX_ASPNG 23 605

SEQRES 1 A 583 SER ASN GLY ILE GLU ALA SER LEU LEU THR ASP PRO LYS SEQRES 2 A 583 ASP VAL SER GLY ARG THR VAL ASP TYR ILE ILE ALA GLY SEQRES 3 A 583 GLY GLY LEU THR GLY LEU THR THR ALA ALA ARG LEU THR SEQRES 4 A 583 GLU ASN PRO ASN ILE SER VAL LEU VAL ILE GLU SER GLY SEQRES 5 A 583 SER TYR GLU SER ASP ARG GLY PRO ILE ILE GLU ASP LEU SEQRES 6 A 583 ASN ALA TYR GLY ASP ILE PHE GLY SER SER VAL ASP HIS SEQRES 7 A 583 ALA TYR GLU THR VAL GLU LEU ALA THR ASN ASN GLN THR SEQRES 8 A 583 ALA LEU ILE ARG SER GLY ASN GLY LEU GLY GLY SER THR SEQRES 9 A 583 LEU VAL ASN GLY GLY THR TRP THR ARG PRO HIS LYS ALA SEQRES 10 A 583 GLN VAL ASP SER TRP GLU THR VAL PHE GLY ASN GLU GLY SEQRES 11 A 583 TRP ASN TRP ASP ASN VAL ALA ALA TYR SER LEU GLN ALA SEQRES 12 A 583 GLU ARG ALA ARG ALA PRO ASN ALA LYS GLN ILE ALA ALA SEQRES 13 A 583 GLY HIS TYR PHE ASN ALA SER CYS HIS GLY VAL ASN GLY SEQRES 14 A 583 THR VAL HIS ALA GLY PRO ARG ASP THR GLY ASP ASP TYR SEQRES 15 A 583 SER PRO ILE VAL LYS ALA LEU MET SER ALA VAL GLU ASP SEQRES 16 A 583 ARG GLY VAL PRO THR LYS LYS ASP PHE GLY CYS GLY ASP SEQRES 17 A 583 PRO HIS GLY VAL SER MET PHE PRO ASN THR LEU HIS GLU SEQRES 18 A 583 ASP GLN VAL ARG SER ASP ALA ALA ARG GLU TRP LEU LEU SEQRES 19 A 583 PRO ASN TYR GLN ARG PRO ASN LEU GLN VAL LEU THR GLY SEQRES 20 A 583 GLN TYR VAL GLY LYS VAL LEU LEU SER GLN ASN GLY THR SEQRES 21 A 583 THR PRO ARG ALA VAL GLY VAL GLU PHE GLY THR HIS LYS SEQRES 22 A 583 GLY ASN THR HIS ASN VAL TYR ALA LYS HIS GLU VAL LEU SEQRES 23 A 583 LEU ALA ALA GLY SER ALA VAL SER PRO THR ILE LEU GLU SEQRES 24 A 583 TYR SER GLY ILE GLY MET LYS SER ILE LEU GLU PRO LEU SEQRES 25 A 583 GLY ILE ASP THR VAL VAL ASP LEU PRO VAL GLY LEU ASN SEQRES 26 A 583 LEU GLN ASP GLN THR THR ALA THR VAL ARG SER ARG ILE SEQRES 27 A 583 THR SER ALA GLY ALA GLY GLN GLY GLN ALA ALA TRP PHE SEQRES 28 A 583 ALA THR PHE ASN GLU THR PHE GLY ASP TYR SER GLU LYS SEQRES 29 A 583 ALA HIS GLU LEU LEU ASN THR LYS LEU GLU GLN TRP ALA SEQRES 30 A 583 GLU GLU ALA VAL ALA ARG GLY GLY PHE HIS ASN THR THR SEQRES 31 A 583 ALA LEU LEU ILE GLN TYR GLU ASN TYR ARG ASP TRP ILE SEQRES 32 A 583 VAL ASN HIS ASN VAL ALA TYR SER GLU LEU PHE LEU ASP SEQRES 33 A 583 THR ALA GLY VAL ALA SER PHE ASP VAL TRP ASP LEU LEU SEQRES 34 A 583 PRO PHE THR ARG GLY TYR VAL HIS ILE LEU ASP LYS ASP SEQRES 35 A 583 PRO TYR LEU HIS HIS PHE ALA TYR ASP PRO GLN TYR PHE SEQRES 36 A 583 LEU ASN GLU LEU ASP LEU LEU GLY GLN ALA ALA ALA THR SEQRES 37 A 583 GLN LEU ALA ARG ASN ILE SER ASN SER GLY ALA MET GLN SEQRES 38 A 583 THR TYR PHE ALA GLY GLU THR ILE PRO GLY ASP ASN LEU SEQRES 39 A 583 ALA TYR ASP ALA ASP LEU SER ALA TRP THR GLU TYR ILE SEQRES 40 A 583 PRO TYR HIS PHE ARG PRO ASN TYR HIS GLY VAL GLY THR SEQRES 41 A 583 CYS SER MET MET PRO LYS GLU MET GLY GLY VAL VAL ASP SEQRES 42 A 583 ASN ALA ALA ARG VAL TYR GLY VAL GLN GLY LEU ARG VAL SEQRES 43 A 583 ILE ASP GLY SER ILE PRO PRO THR GLN MET SER SER HIS SEQRES 44 A 583 VAL MET THR VAL PHE TYR ALA MET ALA LEU LYS ILE SER SEQRES 45 A 583 ASP ALA ILE LEU GLU ASP TYR ALA SER MET GLN

MODRES 3QVR ASN A 355 ASN GLYCOSYLATION SITE MODRES 3QVR ASN A 89 ASN GLYCOSYLATION SITE MODRES 3QVR ASN A 161 ASN GLYCOSYLATION SITE MODRES 3QVR ASN A 388 ASN GLYCOSYLATION SITE

HET NAG A 601 14 HET NAG A 602 14 HET BMA A 613 11 HET MAN A 615 11 HET MAN A 616 11 HET NAG A 603 14 HET NAG A 604 14 HET NAG A 605 14 HET FAD A 600 53 HET CL A 701 1

HETNAM NAG N-ACETYL-D-GLUCOSAMINE HETNAM BMA BETA-D-MANNOSE HETNAM MAN ALPHA-D-MANNOSE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM CL CHLORIDE ION

FORMUL 2 NAG 5(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 2 MAN 2(C6 H12 O6) FORMUL 6 FAD C27 H33 N9 O15 P2 FORMUL 7 CL CL 1- FORMUL 8 HOH *1010(H2 O)

HELIX 1 1 GLY A 3 LEU A 8 1 6 HELIX 2 2 ASP A 11 VAL A 15 5 5 HELIX 3 3 GLY A 28 THR A 39 1 12 HELIX 4 4 GLY A 59 ASP A 64 1 6 HELIX 5 5 LEU A 65 TYR A 68 5 4 HELIX 6 6 GLY A 101 VAL A 106 5 6 HELIX 7 7 HIS A 115 VAL A 125 1 11 HELIX 8 8 ASN A 132 ALA A 143 1 12 HELIX 9 9 ASN A 150 GLY A 157 1 8 HELIX 10 10 ASN A 161 HIS A 165 5 5 HELIX 11 11 PRO A 184 ASP A 195 1 12 HELIX 12 12 ASP A 227 LEU A 233 1 7 HELIX 13 13 VAL A 293 SER A 301 1 9 HELIX 14 14 MET A 305 GLU A 310 1 6 HELIX 15 15 PRO A 311 GLY A 313 5 3 HELIX 16 16 SER A 340 ALA A 343 5 4 HELIX 17 17 PHE A 354 GLY A 359 1 6 HELIX 18 18 TYR A 361 LYS A 372 1 12 HELIX 19 19 LYS A 372 ARG A 383 1 12 HELIX 20 20 ASN A 388 ASN A 407 1 20 HELIX 21 21 ASP A 442 HIS A 446 5 5 HELIX 22 22 ASN A 457 ASN A 476 1 20 HELIX 23 23 SER A 477 THR A 482 5 6 HELIX 24 24 PRO A 490 LEU A 494 5 5 HELIX 25 25 ASP A 499 ILE A 507 1 9 HELIX 26 26 PRO A 508 HIS A 510 5 3 HELIX 27 27 PRO A 525 GLY A 529 5 5 HELIX 28 28 VAL A 560 MET A 582 1 23

SHEET 1 A 6 LEU A 242 LEU A 245 0 SHEET 2 A 6 VAL A 46 ILE A 49 1 N VAL A 48 O LEU A 245 SHEET 3 A 6 THR A 19 ALA A 25 1 N ILE A 24 O LEU A 47 SHEET 4 A 6 THR A 276 LEU A 287 1 O LYS A 282 N VAL A 20 SHEET 5 A 6 ARG A 263 GLY A 270 -1 N PHE A 269 O HIS A 277 SHEET 6 A 6 TYR A 249 SER A 256 -1 N GLY A 251 O GLU A 268 SHEET 1 B 5 LEU A 242 LEU A 245 0 SHEET 2 B 5 VAL A 46 ILE A 49 1 N VAL A 48 O LEU A 245 SHEET 3 B 5 THR A 19 ALA A 25 1 N ILE A 24 O LEU A 47 SHEET 4 B 5 THR A 276 LEU A 287 1 O LYS A 282 N VAL A 20 SHEET 5 B 5 LEU A 544 VAL A 546 1 O ARG A 545 N LEU A 287 SHEET 1 C 2 TYR A 80 GLU A 81 0 SHEET 2 C 2 LEU A 93 ILE A 94 -1 O ILE A 94 N TYR A 80 SHEET 1 D 2 GLU A 144 ALA A 146 0 SHEET 2 D 2 VAL A 171 ALA A 173 1 O VAL A 171 N ARG A 145 SHEET 1 E 6 GLY A 211 SER A 213 0 SHEET 2 E 6 GLN A 347 THR A 353 -1 O PHE A 351 N GLY A 211 SHEET 3 E 6 ALA A 409 ASP A 416 -1 O TYR A 410 N ALA A 352 SHEET 4 E 6 VAL A 420 ASP A 427 -1 O ASP A 424 N PHE A 414 SHEET 5 E 6 THR A 330 ILE A 338 -1 N VAL A 334 O PHE A 423 SHEET 6 E 6 PHE A 484 ILE A 489 -1 O GLY A 486 N ARG A 337 SHEET 1 F 6 GLY A 211 SER A 213 0 SHEET 2 F 6 GLN A 347 THR A 353 -1 O PHE A 351 N GLY A 211 SHEET 3 F 6 ALA A 409 ASP A 416 -1 O TYR A 410 N ALA A 352 SHEET 4 F 6 VAL A 420 ASP A 427 -1 O ASP A 424 N PHE A 414 SHEET 5 F 6 THR A 330 ILE A 338 -1 N VAL A 334 O PHE A 423 SHEET 6 F 6 ARG A 512 PRO A 513 -1 O ARG A 512 N THR A 331 SHEET 1 G 2 ILE A 303 GLY A 304 0 SHEET 2 G 2 VAL A 318 ASP A 319 1 O VAL A 318 N GLY A 304 SHEET 1 H 3 LEU A 324 LEU A 326 0 SHEET 2 H 3 GLY A 434 ILE A 438 -1 O GLY A 434 N LEU A 326 SHEET 3 H 3 PHE A 448 ASP A 451 -1 O ALA A 449 N HIS A 437

SSBOND 1 CYS A 164 CYS A 206 1555 1555 2.08

LINK ND2 ASN A 355 C1 NAG A 604 1555 1555 1.43 LINK ND2 ASN A 89 C1 NAG A 601 1555 1555 1.43 LINK ND2 ASN A 161 C1 NAG A 603 1555 1555 1.43 LINK O4 NAG A 602 C1 BMA A 613 1555 1555 1.44 LINK ND2 ASN A 388 C1 NAG A 605 1555 1555 1.44 LINK O4 NAG A 601 C1 NAG A 602 1555 1555 1.44 LINK O2 MAN A 615 C1 MAN A 616 1555 1555 1.45 LINK O3 BMA A 613 C1 MAN A 615 1555 1555 1.45

CISPEP 1 ILE A 489 PRO A 490 0 -0.58

SITE 1 AC1 12 THR A 87 ASN A 89 ASN A 493 TYR A 509 SITE 2 AC1 12 NAG A 602 HOH A1146 HOH A1178 HOH A1239 SITE 3 AC1 12 HOH A1249 HOH A1256 HOH A1282 HOH A1914 SITE 1 AC2 11 ARG A 337 THR A 488 GLY A 491 ASP A 492 SITE 2 AC2 11 NAG A 601 BMA A 613 HOH A1146 HOH A1331 SITE 3 AC2 11 HOH A1454 HOH A1496 HOH A1860 SITE 1 AC3 5 ARG A 337 GLU A 487 NAG A 602 MAN A 615 SITE 2 AC3 5 HOH A1003 SITE 1 AC4 10 PHE A 484 GLY A 486 GLU A 487 BMA A 613 SITE 2 AC4 10 MAN A 616 HOH A1124 HOH A1389 HOH A1584 SITE 3 AC4 10 HOH A1705 HOH A1795 SITE 1 AC5 5 MAN A 615 HOH A1504 HOH A1584 HOH A1586 SITE 2 AC5 5 HOH A1894 SITE 1 AC6 9 TYR A 159 ASN A 161 CYS A 164 HOH A1397 SITE 2 AC6 9 HOH A1413 HOH A1417 HOH A1531 HOH A1844 SITE 3 AC6 9 HOH A1927 SITE 1 AC7 11 ASN A 355 GLU A 363 HIS A 366 VAL A 404 SITE 2 AC7 11 ASN A 407 HOH A1283 HOH A1374 HOH A1421 SITE 3 AC7 11 HOH A1748 HOH A1835 HOH A1882 SITE 1 AC8 12 TYR A 139 GLN A 142 ASN A 388 ALA A 391 SITE 2 AC8 12 ILE A 394 GLU A 527 MET A 528 ASP A 573 SITE 3 AC8 12 HOH A1243 HOH A1306 HOH A1427 HOH A1944 SITE 1 AC9 40 GLY A 26 GLY A 28 LEU A 29 THR A 30 SITE 2 AC9 40 ILE A 49 GLU A 50 SER A 51 TYR A 68 SITE 3 AC9 40 HIS A 78 ARG A 95 GLY A 97 ASN A 98 SITE 4 AC9 40 GLY A 99 GLY A 102 SER A 103 ASN A 107 SITE 5 AC9 40 GLY A 108 GLY A 109 THR A 110 TYR A 249 SITE 6 AC9 40 VAL A 250 ALA A 288 ALA A 289 VAL A 293 SITE 7 AC9 40 TYR A 515 ASP A 548 GLY A 549 HIS A 559 SITE 8 AC9 40 VAL A 560 MET A 561 PHE A 564 HOH A1008 SITE 9 AC9 40 HOH A1012 HOH A1026 HOH A1027 HOH A1030 SITE 10 AC9 40 HOH A1057 HOH A1078 HOH A1097 HOH A1142 SITE 1 BC1 4 HIS A 172 GLU A 221 HOH A1546 HOH A1924

CRYST1 65.952 65.952 214.252 90.00 90.00 120.00 P 31 2 1 6

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 0.015163 0.008754 0.000000 0.00000

SCALE2 0.000000 0.017508 0.000000 0.00000

SCALE3 0.000000 0.000000 0.004667 0.00000