10 20 30 40 50 60 70 80 3QO7 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER LIGASE 09-FEB-11 3QO7
TITLE CRYSTAL STRUCTURE OF THE SERYL-TRNA SYNTHETASE FROM CANDIDA ALBICANS
COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERYL-TRNA SYNTHETASE, CYTOPLASMIC; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SERINE--TRNA LIGASE, SERRS, SERYL-TRNA(SER/SEC) SYNTHETASE; COMPND 5 EC: 6.1.1.11; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDA ALBICANS; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 5476; SOURCE 5 GENE: SES1, CAO19.7901; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: P7-7
KEYWDS CLASS-II AMINOACYL-TRNA SYNTHETASE FAMILY, TYPE-1 SERYL-TRNA KEYWDS 2 SYNTHETASE SUBFAMILY, AMINOACYL-TRNA SYNTHETASE, TRNA, SERINE, AMINO KEYWDS 3 ACID BIOSYNTHESIS, CTG-CLADE, CODON AMBIGUITY, PATHOGEN, LIGASE
EXPDTA X-RAY DIFFRACTION
AUTHOR R.ROCHA,M.A.SANTOS,P.J.B.PEREIRA,S.MACEDO-RIBEIRO
REVDAT 5 10-SEP-14 3QO7 1 JRNL REMARK REVDAT 4 14-SEP-11 3QO7 1 JRNL REVDAT 3 31-AUG-11 3QO7 1 JRNL REVDAT 2 24-AUG-11 3QO7 1 JRNL REVDAT 1 03-AUG-11 3QO7 0
JRNL AUTH R.ROCHA,P.J.PEREIRA,M.A.SANTOS,S.MACEDO-RIBEIRO JRNL TITL UNVEILING THE STRUCTURAL BASIS FOR TRANSLATIONAL AMBIGUITY JRNL TITL 2 TOLERANCE IN A HUMAN FUNGAL PATHOGEN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 14091 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 21825144 JRNL DOI 10.1073/PNAS.1102835108
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.ROCHA,P.J.BARBOSA PEREIRA,M.A.SANTOS,S.MACEDO-RIBEIRO REMARK 1 TITL PURIFICATION, CRYSTALLIZATION AND PRELIMINARY X-RAY REMARK 1 TITL 2 DIFFRACTION ANALYSIS OF THE SERYL-TRNA SYNTHETASE FROM REMARK 1 TITL 3 CANDIDA ALBICANS. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 67 153 2011 REMARK 1 REFN ISSN 1744-3091 REMARK 1 PMID 21206050 REMARK 1 DOI 10.1107/S1744309110048542
REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 22755 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 1105 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.9806 - 5.0981 1.00 2968 159 0.1919 0.1860 REMARK 3 2 5.0981 - 4.0473 1.00 2797 147 0.1385 0.1805 REMARK 3 3 4.0473 - 3.5359 1.00 2740 126 0.1567 0.2197 REMARK 3 4 3.5359 - 3.2127 0.99 2695 143 0.1745 0.2270 REMARK 3 5 3.2127 - 2.9825 0.99 2651 157 0.1897 0.2523 REMARK 3 6 2.9825 - 2.8067 0.99 2662 127 0.2044 0.2644 REMARK 3 7 2.8067 - 2.6661 0.97 2588 130 0.2274 0.2526 REMARK 3 8 2.6661 - 2.5501 0.95 2549 116 0.2455 0.3197 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 44.83 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.60870 REMARK 3 B22 (A**2) : 7.60870 REMARK 3 B33 (A**2) : -15.21740 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3688 REMARK 3 ANGLE : 1.303 4983 REMARK 3 CHIRALITY : 0.082 527 REMARK 3 PLANARITY : 0.005 648 REMARK 3 DIHEDRAL : 16.206 1419 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (chain A and resid 1:101) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3574 -31.8120 27.3733 REMARK 3 T TENSOR REMARK 3 T11: 0.2551 T22: 0.4331 REMARK 3 T33: 0.3394 T12: 0.0887 REMARK 3 T13: -0.0254 T23: -0.1056 REMARK 3 L TENSOR REMARK 3 L11: 1.3417 L22: 0.2761 REMARK 3 L33: 0.6961 L12: 0.5528 REMARK 3 L13: 0.1277 L23: -0.1092 REMARK 3 S TENSOR REMARK 3 S11: -0.1081 S12: -0.0225 S13: -0.1950 REMARK 3 S21: -0.0383 S22: 0.0647 S23: -0.1664 REMARK 3 S31: -0.1214 S32: 0.4945 S33: -0.0705 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (chain A and resid 102:162) REMARK 3 ORIGIN FOR THE GROUP (A): -20.5524 -26.5536 0.8970 REMARK 3 T TENSOR REMARK 3 T11: 0.3876 T22: 0.2756 REMARK 3 T33: 0.3135 T12: 0.0167 REMARK 3 T13: -0.0229 T23: -0.0352 REMARK 3 L TENSOR REMARK 3 L11: 1.2951 L22: 0.4030 REMARK 3 L33: 0.5553 L12: -1.4208 REMARK 3 L13: 0.8577 L23: -0.3949 REMARK 3 S TENSOR REMARK 3 S11: 0.0439 S12: 0.3196 S13: 0.0963 REMARK 3 S21: -0.0378 S22: -0.0335 S23: -0.0715 REMARK 3 S31: 0.1585 S32: 0.1619 S33: -0.0408 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (chain A and resid 163:297) REMARK 3 ORIGIN FOR THE GROUP (A): -17.6246 -18.6769 19.6705 REMARK 3 T TENSOR REMARK 3 T11: 0.2155 T22: 0.2210 REMARK 3 T33: 0.2391 T12: -0.0184 REMARK 3 T13: 0.0366 T23: -0.0483 REMARK 3 L TENSOR REMARK 3 L11: 0.9768 L22: 1.0706 REMARK 3 L33: 1.4475 L12: -0.5621 REMARK 3 L13: 0.1547 L23: -0.0312 REMARK 3 S TENSOR REMARK 3 S11: 0.1413 S12: 0.1081 S13: 0.0223 REMARK 3 S21: -0.1139 S22: -0.0763 S23: -0.0845 REMARK 3 S31: -0.0476 S32: 0.2524 S33: -0.0770 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (chain A and resid 298:452) REMARK 3 ORIGIN FOR THE GROUP (A): -22.4306 -27.5986 10.4499 REMARK 3 T TENSOR REMARK 3 T11: 0.2915 T22: 0.1596 REMARK 3 T33: 0.2163 T12: 0.0489 REMARK 3 T13: -0.0380 T23: -0.0607 REMARK 3 L TENSOR REMARK 3 L11: 0.9265 L22: 0.0731 REMARK 3 L33: 1.0303 L12: 0.0794 REMARK 3 L13: 0.0525 L23: -0.1234 REMARK 3 S TENSOR REMARK 3 S11: 0.1549 S12: 0.1002 S13: -0.1005 REMARK 3 S21: -0.1327 S22: -0.0149 S23: 0.0044 REMARK 3 S31: 0.3201 S32: 0.0127 S33: -0.1132 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 3QO7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-FEB-11. REMARK 100 THE RCSB ID CODE IS RCSB063892.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23155 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 79.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.600 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : 0.08500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.30 REMARK 200 R MERGE FOR SHELL (I) : 0.57000 REMARK 200 R SYM FOR SHELL (I) : 0.57000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: PDB ENTRY 2DQ0 REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.2-3.4 M AMMONIUM SULFATE, 0-2% V/V REMARK 280 GLYCEROL, 100 MM MES/SODIUM, PH 5.6-5.8, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 298K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.94633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 183.89267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 137.91950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 229.86583 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.97317 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 91.94633 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 183.89267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 229.86583 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 137.91950 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 45.97317 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 45.97317
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 504 LIES ON A SPECIAL POSITION.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 284 REMARK 465 HIS A 285 REMARK 465 GLY A 286 REMARK 465 LYS A 287 REMARK 465 ASP A 288 REMARK 465 LYS A 388 REMARK 465 GLN A 389 REMARK 465 GLN A 390 REMARK 465 ASN A 391 REMARK 465 GLN A 392 REMARK 465 GLN A 393 REMARK 465 THR A 452 REMARK 465 THR A 453 REMARK 465 SER A 454 REMARK 465 VAL A 455 REMARK 465 LYS A 456 REMARK 465 LYS A 457 REMARK 465 ALA A 458 REMARK 465 LYS A 459 REMARK 465 GLY A 460 REMARK 465 LYS A 461 REMARK 465 ASN A 462 REMARK 465 PRO A 463 REMARK 465 LYS A 464 REMARK 465 ASN A 465 REMARK 465 THR A 466 REMARK 465 THR A 467 REMARK 465 SER A 468 REMARK 465 VAL A 469 REMARK 465 LYS A 470 REMARK 465 LYS A 471 REMARK 465 ALA A 472 REMARK 465 LYS A 473 REMARK 465 GLY A 474 REMARK 465 LYS A 475 REMARK 465 ASN A 476 REMARK 465 GLY A 477 REMARK 465 SER A 478 REMARK 465 ARG A 479 REMARK 465 HIS A 480 REMARK 465 HIS A 481 REMARK 465 HIS A 482 REMARK 465 HIS A 483 REMARK 465 HIS A 484 REMARK 465 HIS A 485
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 3 CG OD1 OD2 REMARK 470 TRP A 290 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 290 CZ3 CH2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 141 49.31 -79.46 REMARK 500 ASN A 182 -124.62 54.82 REMARK 500 ASP A 228 45.04 -73.17 REMARK 500 GLU A 229 -37.90 -178.39 REMARK 500 ASP A 236 76.93 -115.83 REMARK 500 THR A 246 146.04 -173.92 REMARK 500 ALA A 282 46.87 -153.85 REMARK 500 THR A 374 -130.82 37.66 REMARK 500 GLU A 438 52.82 35.10 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 486
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QNE RELATED DB: PDB REMARK 900 APO-ENZYME (MAJOR ISOFORM: CUG CODON TRANSLATED AS A SERINE) REMARK 900 RELATED ID: 3QO5 RELATED DB: PDB REMARK 900 APO-ENZYME (MINOR ISOFORM: CUG CODON TRANSLATED AS A REMARK 900 LEUCINE) REMARK 900 RELATED ID: 3QO8 RELATED DB: PDB REMARK 900 COMPLEX WITH SERYL-ADENYLATE ANALOG (MAJOR ISOFORM: CUG REMARK 900 CODON TRANSLATED AS A SERINE)
DBREF 3QO7 A 1 462 UNP Q9HGT6 SYSC_CANAL 1 462
SEQADV 3QO7 PRO A 463 UNP Q9HGT6 EXPRESSION TAG SEQADV 3QO7 LYS A 464 UNP Q9HGT6 EXPRESSION TAG SEQADV 3QO7 ASN A 465 UNP Q9HGT6 EXPRESSION TAG SEQADV 3QO7 THR A 466 UNP Q9HGT6 EXPRESSION TAG SEQADV 3QO7 THR A 467 UNP Q9HGT6 EXPRESSION TAG SEQADV 3QO7 SER A 468 UNP Q9HGT6 EXPRESSION TAG SEQADV 3QO7 VAL A 469 UNP Q9HGT6 EXPRESSION TAG SEQADV 3QO7 LYS A 470 UNP Q9HGT6 EXPRESSION TAG SEQADV 3QO7 LYS A 471 UNP Q9HGT6 EXPRESSION TAG SEQADV 3QO7 ALA A 472 UNP Q9HGT6 EXPRESSION TAG SEQADV 3QO7 LYS A 473 UNP Q9HGT6 EXPRESSION TAG SEQADV 3QO7 GLY A 474 UNP Q9HGT6 EXPRESSION TAG SEQADV 3QO7 LYS A 475 UNP Q9HGT6 EXPRESSION TAG SEQADV 3QO7 ASN A 476 UNP Q9HGT6 EXPRESSION TAG SEQADV 3QO7 GLY A 477 UNP Q9HGT6 EXPRESSION TAG SEQADV 3QO7 SER A 478 UNP Q9HGT6 EXPRESSION TAG SEQADV 3QO7 ARG A 479 UNP Q9HGT6 EXPRESSION TAG SEQADV 3QO7 HIS A 480 UNP Q9HGT6 EXPRESSION TAG SEQADV 3QO7 HIS A 481 UNP Q9HGT6 EXPRESSION TAG SEQADV 3QO7 HIS A 482 UNP Q9HGT6 EXPRESSION TAG SEQADV 3QO7 HIS A 483 UNP Q9HGT6 EXPRESSION TAG SEQADV 3QO7 HIS A 484 UNP Q9HGT6 EXPRESSION TAG SEQADV 3QO7 HIS A 485 UNP Q9HGT6 EXPRESSION TAG
SEQRES 1 A 485 MET LEU ASP ILE ASN ALA PHE LEU VAL GLU LYS GLY GLY SEQRES 2 A 485 ASP PRO GLU ILE ILE LYS ALA SER GLN LYS LYS ARG GLY SEQRES 3 A 485 ASP SER VAL GLU LEU VAL ASP GLU ILE ILE ALA GLU TYR SEQRES 4 A 485 LYS GLU TRP VAL LYS LEU ARG PHE ASP LEU ASP GLU HIS SEQRES 5 A 485 ASN LYS LYS LEU ASN SER VAL GLN LYS GLU ILE GLY LYS SEQRES 6 A 485 ARG PHE LYS ALA LYS GLU ASP ALA LYS ASP LEU ILE ALA SEQRES 7 A 485 GLU LYS GLU LYS LEU SER ASN GLU LYS LYS GLU ILE ILE SEQRES 8 A 485 GLU LYS GLU ALA GLU ALA ASP LYS ASN LEU ARG SER LYS SEQRES 9 A 485 ILE ASN GLN VAL GLY ASN ILE VAL HIS GLU SER VAL VAL SEQRES 10 A 485 ASP SER GLN ASP GLU GLU ASN ASN GLU LEU VAL ARG THR SEQRES 11 A 485 TRP THR PRO GLU ASN TYR LYS LYS PRO GLU GLN ILE ALA SEQRES 12 A 485 ALA ALA THR GLY ALA PRO ALA LYS LEU SER HIS HIS GLU SEQRES 13 A 485 VAL LEU LEU ARG LEU ASP GLY TYR ASP PRO GLU ARG GLY SEQRES 14 A 485 VAL ARG ILE VAL GLY HIS ARG GLY TYR PHE LEU ARG ASN SEQRES 15 A 485 TYR GLY VAL PHE LEU ASN GLN ALA LEU ILE ASN TYR GLY SEQRES 16 A 485 LEU SER PHE LEU SER SER LYS GLY TYR VAL PRO LEU GLN SEQRES 17 A 485 ALA PRO VAL MET MET ASN LYS GLU VAL MET ALA LYS THR SEQRES 18 A 485 ALA GLN LEU SER GLN PHE ASP GLU GLU LEU TYR LYS VAL SEQRES 19 A 485 ILE ASP GLY GLU ASP GLU LYS TYR LEU ILE ALA THR SER SEQRES 20 A 485 GLU GLN PRO ILE SER ALA TYR HIS ALA GLY GLU TRP PHE SEQRES 21 A 485 GLU SER PRO ALA GLU GLN LEU PRO VAL ARG TYR ALA GLY SEQRES 22 A 485 TYR SER SER CYS PHE ARG ARG GLU ALA GLY SER HIS GLY SEQRES 23 A 485 LYS ASP ALA TRP GLY ILE PHE ARG VAL HIS ALA PHE GLU SEQRES 24 A 485 LYS ILE GLU GLN PHE VAL LEU THR GLU PRO GLU LYS SER SEQRES 25 A 485 TRP GLU GLU PHE ASP ARG MET ILE GLY CYS SER GLU GLU SEQRES 26 A 485 PHE TYR GLN SER LEU GLY LEU PRO TYR ARG VAL VAL GLY SEQRES 27 A 485 ILE VAL SER GLY GLU LEU ASN ASN ALA ALA ALA LYS LYS SEQRES 28 A 485 TYR ASP LEU GLU ALA TRP PHE PRO PHE GLN GLN GLU TYR SEQRES 29 A 485 LYS GLU LEU VAL SER CYS SER ASN CYS THR ASP TYR GLN SEQRES 30 A 485 SER ARG ASN LEU GLU ILE ARG CYS GLY ILE LYS GLN GLN SEQRES 31 A 485 ASN GLN GLN GLU LYS LYS TYR VAL HIS CYS LEU ASN SER SEQRES 32 A 485 THR LEU SER ALA THR GLU ARG THR ILE CYS CYS ILE LEU SEQRES 33 A 485 GLU ASN TYR GLN LYS GLU ASP GLY LEU VAL ILE PRO GLU SEQRES 34 A 485 VAL LEU ARG LYS TYR ILE PRO GLY GLU PRO GLU PHE ILE SEQRES 35 A 485 PRO TYR ILE LYS GLU LEU PRO LYS ASN THR THR SER VAL SEQRES 36 A 485 LYS LYS ALA LYS GLY LYS ASN PRO LYS ASN THR THR SER SEQRES 37 A 485 VAL LYS LYS ALA LYS GLY LYS ASN GLY SER ARG HIS HIS SEQRES 38 A 485 HIS HIS HIS HIS
HET ATP A 486 31
HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE
FORMUL 2 ATP C10 H16 N5 O13 P3 FORMUL 3 HOH *58(H2 O)
HELIX 1 1 ASP A 3 GLY A 12 5 10 HELIX 2 2 ASP A 14 GLY A 26 1 13 HELIX 3 3 VAL A 29 ALA A 69 1 41 HELIX 4 4 ALA A 73 ASN A 106 1 34 HELIX 5 5 ASP A 121 ASN A 125 5 5 HELIX 6 6 SER A 153 LEU A 161 1 9 HELIX 7 7 PRO A 166 GLY A 174 1 9 HELIX 8 8 ASN A 182 LYS A 202 1 21 HELIX 9 9 LYS A 215 ALA A 222 1 8 HELIX 10 10 GLN A 223 LEU A 231 1 9 HELIX 11 11 SER A 247 ALA A 253 1 7 HELIX 12 12 SER A 262 LEU A 267 1 6 HELIX 13 13 GLU A 308 GLU A 310 5 3 HELIX 14 14 LYS A 311 LEU A 330 1 20 HELIX 15 15 VAL A 340 LEU A 344 5 5 HELIX 16 16 ASP A 375 GLU A 382 1 8 HELIX 17 17 THR A 408 TYR A 419 1 12 HELIX 18 18 PRO A 428 ILE A 435 5 8
SHEET 1 A 8 GLU A 126 TRP A 131 0 SHEET 2 A 8 TYR A 334 GLY A 338 -1 O GLY A 338 N GLU A 126 SHEET 3 A 8 LYS A 350 PHE A 358 -1 O GLU A 355 N ARG A 335 SHEET 4 A 8 GLU A 363 ASN A 372 -1 O CYS A 370 N TYR A 352 SHEET 5 A 8 HIS A 399 ALA A 407 -1 O ASN A 402 N SER A 371 SHEET 6 A 8 ALA A 297 THR A 307 -1 N ILE A 301 O LEU A 405 SHEET 7 A 8 VAL A 269 PHE A 278 -1 N TYR A 271 O PHE A 304 SHEET 8 A 8 VAL A 205 GLN A 208 1 N VAL A 205 O ARG A 270 SHEET 1 B 2 TYR A 164 ASP A 165 0 SHEET 2 B 2 PHE A 179 LEU A 180 -1 O PHE A 179 N ASP A 165 SHEET 1 C 3 MET A 212 ASN A 214 0 SHEET 2 C 3 ASP A 239 LEU A 243 -1 O TYR A 242 N MET A 213 SHEET 3 C 3 LYS A 233 ASP A 236 -1 N ASP A 236 O ASP A 239 SHEET 1 D 2 TRP A 259 PHE A 260 0 SHEET 2 D 2 ARG A 384 CYS A 385 1 O ARG A 384 N PHE A 260 SHEET 1 E 3 GLN A 420 LYS A 421 0 SHEET 2 E 3 GLY A 424 VAL A 426 -1 O GLY A 424 N LYS A 421 SHEET 3 E 3 PHE A 441 PRO A 443 -1 O ILE A 442 N LEU A 425
CISPEP 1 LEU A 267 PRO A 268 0 -3.48
SITE 1 AC1 15 ARG A 279 PHE A 293 ARG A 294 VAL A 295 SITE 2 AC1 15 PHE A 298 LYS A 300 LYS A 351 ASP A 353 SITE 3 AC1 15 GLU A 366 LEU A 367 VAL A 368 SER A 369 SITE 4 AC1 15 THR A 404 ALA A 407 ARG A 410
CRYST1 91.152 91.152 275.839 90.00 90.00 120.00 P 61 2 2 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010971 0.006334 0.000000 0.00000
SCALE2 0.000000 0.012668 0.000000 0.00000
SCALE3 0.000000 0.000000 0.003625 0.00000