10 20 30 40 50 60 70 80 3NQ5 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 29-JUN-10 3NQ5
TITLE CRYSTAL STRUCTURE OF TYROSINASE FROM BACILLUS MEGATERIUM R209H MUTANT
COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.14.18.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS MEGATERIUM; SOURCE 3 ORGANISM_TAXID: 1404; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET9D
KEYWDS TYROSINASE, TYPE3 COPPER PROTEINS, BACILLUS MEGATERIUM, KEYWDS 2 OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR M.SENDOVSKI,M.KANTEEV,N.ADIR,A.FISHMAN
REVDAT 2 26-FEB-14 3NQ5 1 JRNL VERSN REVDAT 1 17-NOV-10 3NQ5 0
JRNL AUTH M.SENDOVSKI,M.KANTEEV,V.SHUSTER BEN-YOSEF,N.ADIR,A.FISHMAN JRNL TITL FIRST STRUCTURES OF AN ACTIVE BACTERIAL TYROSINASE REVEAL JRNL TITL 2 COPPER PLASTICITY. JRNL REF J.MOL.BIOL. V. 405 227 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21040728 JRNL DOI 10.1016/J.JMB.2010.10.048
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.SENDOVSKI,M.KANTEEV,N.ADIR,A.FISHMAN REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY CRYSTALLOGRAPHIC REMARK 1 TITL 2 ANALYSIS OF A BACTERIAL TYROSINASE FROM BACILLUS MEGATERIUM REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN
REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.1_357) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.5 REMARK 3 NUMBER OF REFLECTIONS : 23744 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.304 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2385 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.9346 - 4.9528 0.93 2410 254 0.2133 0.2725 REMARK 3 2 4.9528 - 3.9321 0.94 2302 268 0.1639 0.2482 REMARK 3 3 3.9321 - 3.4353 0.94 2276 259 0.1756 0.2699 REMARK 3 4 3.4353 - 3.1213 0.94 2225 271 0.2124 0.3049 REMARK 3 5 3.1213 - 2.8977 0.93 2236 246 0.2282 0.3490 REMARK 3 6 2.8977 - 2.7269 0.92 2204 240 0.2412 0.3446 REMARK 3 7 2.7269 - 2.5903 0.90 2153 228 0.2452 0.3371 REMARK 3 8 2.5903 - 2.4776 0.88 2085 241 0.2761 0.3621 REMARK 3 9 2.4776 - 2.3822 0.78 1858 196 0.2924 0.3857 REMARK 3 10 2.3822 - 2.3000 0.68 1610 182 0.2812 0.3669 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 38.62 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.73270 REMARK 3 B22 (A**2) : 8.53210 REMARK 3 B33 (A**2) : -10.59110 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4840 REMARK 3 ANGLE : 1.162 6578 REMARK 3 CHIRALITY : 0.079 656 REMARK 3 PLANARITY : 0.006 871 REMARK 3 DIHEDRAL : 16.951 1756 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 3NQ5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JUL-10. REMARK 100 THE RCSB ID CODE IS RCSB060140.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25173 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 73.555 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.23700 REMARK 200 R SYM FOR SHELL (I) : 0.23700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3NM8 REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, ZINC ACETATE, SODIUM REMARK 280 CACODYLATE, PH 6.1, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 290K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.56500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.55500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.42500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.55500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.56500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.42500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -349.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 GLU A 289 REMARK 465 LEU A 290 REMARK 465 ARG A 291 REMARK 465 LYS A 292 REMARK 465 SER A 293 REMARK 465 LYS A 294 REMARK 465 ARG A 295 REMARK 465 SER A 296 REMARK 465 SER A 297 REMARK 465 HIS A 298 REMARK 465 HIS A 299 REMARK 465 HIS A 300 REMARK 465 HIS A 301 REMARK 465 HIS A 302 REMARK 465 HIS A 303 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASN B 3 REMARK 465 ASN B 247 REMARK 465 GLN B 248 REMARK 465 ASN B 249 REMARK 465 GLU B 289 REMARK 465 LEU B 290 REMARK 465 ARG B 291 REMARK 465 LYS B 292 REMARK 465 SER B 293 REMARK 465 LYS B 294 REMARK 465 ARG B 295 REMARK 465 SER B 296 REMARK 465 SER B 297 REMARK 465 HIS B 298 REMARK 465 HIS B 299 REMARK 465 HIS B 300 REMARK 465 HIS B 301 REMARK 465 HIS B 302 REMARK 465 HIS B 303
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 287 ZN ZN B 503 1.51 REMARK 500 CG2 VAL B 218 O HOH B 393 2.12 REMARK 500 NZ LYS A 47 O HOH A 416 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR B 5 CD1 TYR B 5 CE1 -0.114 REMARK 500 TYR B 5 CZ TYR B 5 CE2 -0.094 REMARK 500 TYR B 5 CE2 TYR B 5 CD2 -0.130 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 123 CB - CA - C ANGL. DEV. = -24.8 DEGREES REMARK 500 PHE A 124 N - CA - C ANGL. DEV. = 17.6 DEGREES REMARK 500 TRP A 136 O - C - N ANGL. DEV. = -13.5 DEGREES REMARK 500 THR A 137 C - N - CA ANGL. DEV. = 16.2 DEGREES REMARK 500 ASN A 255 CB - CA - C ANGL. DEV. = -17.6 DEGREES REMARK 500 ILE B 139 O - C - N ANGL. DEV. = -23.7 DEGREES REMARK 500 ASN B 255 CB - CA - C ANGL. DEV. = -20.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 113 -79.21 -144.68 REMARK 500 ASP A 140 -154.01 -96.97 REMARK 500 LEU A 203 -118.35 31.67 REMARK 500 HIS A 245 79.03 -114.15 REMARK 500 LYS A 254 143.84 -172.87 REMARK 500 ASN A 255 47.40 75.56 REMARK 500 ARG B 6 114.83 -162.09 REMARK 500 PHE B 113 -87.85 -157.22 REMARK 500 ASP B 140 -131.89 -75.04 REMARK 500 LEU B 203 -122.37 23.14 REMARK 500 THR B 220 53.67 -146.86 REMARK 500 ASN B 255 6.20 81.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ILE B 139 24.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 PHE A 124 22.2 L L OUTSIDE RANGE REMARK 500 ASN B 188 23.5 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 505 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 95 OE2 REMARK 620 2 HOH B 310 O 99.2 REMARK 620 3 HOH B 305 O 145.7 109.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 508 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 280 NH1 REMARK 620 2 HIS A 279 NE2 87.0 REMARK 620 3 HOH A 326 O 68.7 115.0 REMARK 620 4 HOH A 329 O 116.0 86.3 57.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 502 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 231 NE2 REMARK 620 2 HIS A 208 NE2 118.4 REMARK 620 3 HIS A 204 NE2 102.3 96.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 501 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 60 NE2 REMARK 620 2 HIS A 42 NE2 99.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 13 ND1 REMARK 620 2 HOH B 402 O 103.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 506 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 332 O REMARK 620 2 HIS B 279 NE2 109.6 REMARK 620 3 HOH B 333 O 115.6 100.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 287 OD2 REMARK 620 2 HIS A 13 ND1 112.3 REMARK 620 3 HOH A 382 O 101.4 116.7 REMARK 620 4 HOH A 324 O 103.8 106.9 115.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 502 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 208 NE2 REMARK 620 2 HIS B 231 NE2 118.0 REMARK 620 3 HIS B 204 NE2 90.7 95.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 16 OD1 REMARK 620 2 HOH A 400 O 58.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 505 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 49 NE2 REMARK 620 2 HOH B 396 O 143.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 501 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 42 NE2 REMARK 620 2 HIS B 60 NE2 103.9 REMARK 620 N 1
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 506
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NM8 RELATED DB: PDB REMARK 900 RELATED ID: 3NQ0 RELATED DB: PDB REMARK 900 RELATED ID: 3NQ1 RELATED DB: PDB REMARK 900 RELATED ID: 3NPY RELATED DB: PDB REMARK 900 RELATED ID: 3NTM RELATED DB: PDB
DBREF 3NQ5 A 1 297 UNP B2ZB02 B2ZB02_BACME 1 297 DBREF 3NQ5 B 1 297 UNP B2ZB02 B2ZB02_BACME 1 297
SEQADV 3NQ5 HIS A 209 UNP B2ZB02 ARG 209 ENGINEERED MUTATION SEQADV 3NQ5 HIS A 298 UNP B2ZB02 EXPRESSION TAG SEQADV 3NQ5 HIS A 299 UNP B2ZB02 EXPRESSION TAG SEQADV 3NQ5 HIS A 300 UNP B2ZB02 EXPRESSION TAG SEQADV 3NQ5 HIS A 301 UNP B2ZB02 EXPRESSION TAG SEQADV 3NQ5 HIS A 302 UNP B2ZB02 EXPRESSION TAG SEQADV 3NQ5 HIS A 303 UNP B2ZB02 EXPRESSION TAG SEQADV 3NQ5 HIS B 209 UNP B2ZB02 ARG 209 ENGINEERED MUTATION SEQADV 3NQ5 HIS B 298 UNP B2ZB02 EXPRESSION TAG SEQADV 3NQ5 HIS B 299 UNP B2ZB02 EXPRESSION TAG SEQADV 3NQ5 HIS B 300 UNP B2ZB02 EXPRESSION TAG SEQADV 3NQ5 HIS B 301 UNP B2ZB02 EXPRESSION TAG SEQADV 3NQ5 HIS B 302 UNP B2ZB02 EXPRESSION TAG SEQADV 3NQ5 HIS B 303 UNP B2ZB02 EXPRESSION TAG
SEQRES 1 A 303 MET SER ASN LYS TYR ARG VAL ARG LYS ASN VAL LEU HIS SEQRES 2 A 303 LEU THR ASP THR GLU LYS ARG ASP PHE VAL ARG THR VAL SEQRES 3 A 303 LEU ILE LEU LYS GLU LYS GLY ILE TYR ASP ARG TYR ILE SEQRES 4 A 303 ALA TRP HIS GLY ALA ALA GLY LYS PHE HIS THR PRO PRO SEQRES 5 A 303 GLY SER ASP ARG ASN ALA ALA HIS MET SER SER ALA PHE SEQRES 6 A 303 LEU PRO TRP HIS ARG GLU TYR LEU LEU ARG PHE GLU ARG SEQRES 7 A 303 ASP LEU GLN SER ILE ASN PRO GLU VAL THR LEU PRO TYR SEQRES 8 A 303 TRP GLU TRP GLU THR ASP ALA GLN MET GLN ASP PRO SER SEQRES 9 A 303 GLN SER GLN ILE TRP SER ALA ASP PHE MET GLY GLY ASN SEQRES 10 A 303 GLY ASN PRO ILE LYS ASP PHE ILE VAL ASP THR GLY PRO SEQRES 11 A 303 PHE ALA ALA GLY ARG TRP THR THR ILE ASP GLU GLN GLY SEQRES 12 A 303 ASN PRO SER GLY GLY LEU LYS ARG ASN PHE GLY ALA THR SEQRES 13 A 303 LYS GLU ALA PRO THR LEU PRO THR ARG ASP ASP VAL LEU SEQRES 14 A 303 ASN ALA LEU LYS ILE THR GLN TYR ASP THR PRO PRO TRP SEQRES 15 A 303 ASP MET THR SER GLN ASN SER PHE ARG ASN GLN LEU GLU SEQRES 16 A 303 GLY PHE ILE ASN GLY PRO GLN LEU HIS ASN ARG VAL HIS SEQRES 17 A 303 HIS TRP VAL GLY GLY GLN MET GLY VAL VAL PRO THR ALA SEQRES 18 A 303 PRO ASN ASP PRO VAL PHE PHE LEU HIS HIS ALA ASN VAL SEQRES 19 A 303 ASP ARG ILE TRP ALA VAL TRP GLN ILE ILE HIS ARG ASN SEQRES 20 A 303 GLN ASN TYR GLN PRO MET LYS ASN GLY PRO PHE GLY GLN SEQRES 21 A 303 ASN PHE ARG ASP PRO MET TYR PRO TRP ASN THR THR PRO SEQRES 22 A 303 GLU ASP VAL MET ASN HIS ARG LYS LEU GLY TYR VAL TYR SEQRES 23 A 303 ASP ILE GLU LEU ARG LYS SER LYS ARG SER SER HIS HIS SEQRES 24 A 303 HIS HIS HIS HIS SEQRES 1 B 303 MET SER ASN LYS TYR ARG VAL ARG LYS ASN VAL LEU HIS SEQRES 2 B 303 LEU THR ASP THR GLU LYS ARG ASP PHE VAL ARG THR VAL SEQRES 3 B 303 LEU ILE LEU LYS GLU LYS GLY ILE TYR ASP ARG TYR ILE SEQRES 4 B 303 ALA TRP HIS GLY ALA ALA GLY LYS PHE HIS THR PRO PRO SEQRES 5 B 303 GLY SER ASP ARG ASN ALA ALA HIS MET SER SER ALA PHE SEQRES 6 B 303 LEU PRO TRP HIS ARG GLU TYR LEU LEU ARG PHE GLU ARG SEQRES 7 B 303 ASP LEU GLN SER ILE ASN PRO GLU VAL THR LEU PRO TYR SEQRES 8 B 303 TRP GLU TRP GLU THR ASP ALA GLN MET GLN ASP PRO SER SEQRES 9 B 303 GLN SER GLN ILE TRP SER ALA ASP PHE MET GLY GLY ASN SEQRES 10 B 303 GLY ASN PRO ILE LYS ASP PHE ILE VAL ASP THR GLY PRO SEQRES 11 B 303 PHE ALA ALA GLY ARG TRP THR THR ILE ASP GLU GLN GLY SEQRES 12 B 303 ASN PRO SER GLY GLY LEU LYS ARG ASN PHE GLY ALA THR SEQRES 13 B 303 LYS GLU ALA PRO THR LEU PRO THR ARG ASP ASP VAL LEU SEQRES 14 B 303 ASN ALA LEU LYS ILE THR GLN TYR ASP THR PRO PRO TRP SEQRES 15 B 303 ASP MET THR SER GLN ASN SER PHE ARG ASN GLN LEU GLU SEQRES 16 B 303 GLY PHE ILE ASN GLY PRO GLN LEU HIS ASN ARG VAL HIS SEQRES 17 B 303 HIS TRP VAL GLY GLY GLN MET GLY VAL VAL PRO THR ALA SEQRES 18 B 303 PRO ASN ASP PRO VAL PHE PHE LEU HIS HIS ALA ASN VAL SEQRES 19 B 303 ASP ARG ILE TRP ALA VAL TRP GLN ILE ILE HIS ARG ASN SEQRES 20 B 303 GLN ASN TYR GLN PRO MET LYS ASN GLY PRO PHE GLY GLN SEQRES 21 B 303 ASN PHE ARG ASP PRO MET TYR PRO TRP ASN THR THR PRO SEQRES 22 B 303 GLU ASP VAL MET ASN HIS ARG LYS LEU GLY TYR VAL TYR SEQRES 23 B 303 ASP ILE GLU LEU ARG LYS SER LYS ARG SER SER HIS HIS SEQRES 24 B 303 HIS HIS HIS HIS
HET CU A 501 1 HET CU A 502 1 HET ZN A 503 1 HET ZN A 504 1 HET ZN A 505 1 HET ZN A 506 1 HET ZN A 507 1 HET ZN A 508 1 HET CU B 501 1 HET CU B 502 1 HET ZN B 503 1 HET ZN B 504 1 HET ZN B 505 1 HET ZN B 506 1
HETNAM CU COPPER (II) ION HETNAM ZN ZINC ION
FORMUL 3 CU 4(CU 2+) FORMUL 5 ZN 10(ZN 2+) FORMUL 17 HOH *248(H2 O)
HELIX 1 1 ASN A 10 LEU A 14 5 5 HELIX 2 2 THR A 15 LYS A 32 1 18 HELIX 3 3 GLY A 33 LYS A 47 1 15 HELIX 4 4 ALA A 64 ASN A 84 1 21 HELIX 5 5 GLU A 93 ALA A 98 1 6 HELIX 6 6 ASP A 102 SER A 110 5 9 HELIX 7 7 ASN A 119 ASP A 123 5 5 HELIX 8 8 THR A 164 LEU A 172 1 9 HELIX 9 9 SER A 189 GLY A 196 1 8 HELIX 10 10 GLN A 202 GLY A 212 1 11 HELIX 11 11 GLY A 213 VAL A 217 5 5 HELIX 12 12 THR A 220 ASP A 224 5 5 HELIX 13 13 PRO A 225 HIS A 245 1 21 HELIX 14 14 THR A 272 MET A 277 1 6 HELIX 15 15 ASN A 278 GLY A 283 1 6 HELIX 16 16 ASN B 10 LEU B 14 5 5 HELIX 17 17 THR B 15 LYS B 32 1 18 HELIX 18 18 GLY B 33 PHE B 48 1 16 HELIX 19 19 ALA B 64 ASN B 84 1 21 HELIX 20 20 GLU B 93 ALA B 98 1 6 HELIX 21 21 ASP B 102 SER B 110 5 9 HELIX 22 22 ASN B 119 ASP B 123 5 5 HELIX 23 23 THR B 164 ASN B 170 1 7 HELIX 24 24 SER B 189 GLY B 196 1 8 HELIX 25 25 GLN B 202 GLY B 212 1 11 HELIX 26 26 GLY B 213 ALA B 221 5 9 HELIX 27 27 PRO B 225 HIS B 245 1 21 HELIX 28 28 THR B 272 MET B 277 5 6 HELIX 29 29 ASN B 278 GLY B 283 1 6
SHEET 1 A 2 ARG A 6 ARG A 8 0 SHEET 2 A 2 TYR A 284 TYR A 286 1 O VAL A 285 N ARG A 6 SHEET 1 B 2 VAL B 7 ARG B 8 0 SHEET 2 B 2 VAL B 285 TYR B 286 1 O VAL B 285 N ARG B 8
LINK OE2 GLU B 95 ZN ZN B 505 1555 1555 1.87 LINK NH1 ARG A 280 ZN ZN A 508 1555 1555 1.94 LINK NE2 HIS A 231 CU CU A 502 1555 1555 1.95 LINK NE2 HIS A 60 CU CU A 501 1555 1555 1.95 LINK NE2 HIS A 208 CU CU A 502 1555 1555 1.95 LINK ND1 HIS B 13 ZN ZN B 503 1555 1555 1.97 LINK OE2 GLU B 71 ZN ZN B 504 1555 1555 1.98 LINK ZN ZN B 506 O HOH B 332 1555 1555 1.98 LINK OD2 ASP A 287 ZN ZN A 503 1555 1555 2.00 LINK NE2 HIS B 208 CU CU B 502 1555 1555 2.00 LINK OD1 ASP A 16 ZN ZN A 504 1555 1555 2.01 LINK ZN ZN B 505 O HOH B 310 1555 1555 2.02 LINK NE2 HIS B 279 ZN ZN B 506 1555 1555 2.02 LINK ND1 HIS A 13 ZN ZN A 503 1555 1555 2.04 LINK NE2 HIS A 49 ZN ZN A 505 1555 1555 2.04 LINK NE2 HIS A 204 CU CU A 502 1555 1555 2.06 LINK ZN ZN B 503 O HOH B 402 1555 1555 2.07 LINK NE2 HIS B 231 CU CU B 502 1555 1555 2.07 LINK NE2 HIS A 279 ZN ZN A 508 1555 1555 2.07 LINK OD1 ASP A 123 ZN ZN A 507 1555 1555 2.07 LINK ZN ZN A 503 O HOH A 382 1555 1555 2.09 LINK NE2 HIS B 204 CU CU B 502 1555 1555 2.11 LINK NE2 HIS B 42 CU CU B 501 1555 1555 2.12 LINK NE2 HIS A 42 CU CU A 501 1555 1555 2.13 LINK ZN ZN B 505 O HOH B 305 1555 1555 2.13 LINK ZN ZN A 505 O HOH B 396 1555 1555 2.23 LINK NE2 HIS B 60 CU CU B 501 1555 1555 2.25 LINK ZN ZN A 508 O HOH A 326 1555 1555 2.26 LINK ZN ZN B 506 O HOH B 333 1555 1555 2.28 LINK ZN ZN A 503 O HOH A 324 1555 1555 2.29 LINK ZN ZN A 508 O HOH A 329 1555 1555 2.43 LINK ZN ZN A 504 O HOH A 400 1555 1555 2.54
CISPEP 1 THR A 50 PRO A 51 0 2.19 CISPEP 2 PRO A 180 PRO A 181 0 11.04 CISPEP 3 GLY A 200 PRO A 201 0 -5.59 CISPEP 4 GLN A 251 PRO A 252 0 10.15 CISPEP 5 TYR A 267 PRO A 268 0 3.52 CISPEP 6 THR B 50 PRO B 51 0 -1.58 CISPEP 7 PRO B 180 PRO B 181 0 1.80 CISPEP 8 GLY B 200 PRO B 201 0 -3.63 CISPEP 9 GLN B 251 PRO B 252 0 6.01 CISPEP 10 TYR B 267 PRO B 268 0 9.97
SITE 1 AC1 4 HIS A 42 HIS A 60 HOH A 380 CU A 502 SITE 1 AC2 5 HIS A 204 HIS A 208 PHE A 227 HIS A 231 SITE 2 AC2 5 CU A 501 SITE 1 AC3 4 HIS A 13 ASP A 287 HOH A 324 HOH A 382 SITE 1 AC4 4 ASP A 16 HOH A 400 ASP B 16 ASP B 112 SITE 1 AC5 3 HIS A 49 ASN B 144 HOH B 396 SITE 1 AC6 4 GLU A 71 ARG A 78 HOH A 385 HOH A 398 SITE 1 AC7 2 ASP A 123 ASP B 166 SITE 1 AC8 5 ILE A 243 HIS A 279 ARG A 280 HOH A 326 SITE 2 AC8 5 HOH A 329 SITE 1 AC9 5 HIS B 42 HIS B 60 HIS B 69 HOH B 393 SITE 2 AC9 5 CU B 502 SITE 1 BC1 4 HIS B 204 HIS B 208 HIS B 231 CU B 501 SITE 1 BC2 4 HIS B 13 ASP B 287 HOH B 402 HOH B 404 SITE 1 BC3 4 GLU B 71 ARG B 75 THR B 271 HOH B 401 SITE 1 BC4 3 GLU B 95 HOH B 305 HOH B 310 SITE 1 BC5 3 HIS B 279 HOH B 332 HOH B 333
CRYST1 49.130 80.850 147.110 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.020354 0.000000 0.000000 0.00000
SCALE2 0.000000 0.012369 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006798 0.00000