10 20 30 40 50 60 70 80 3NM8 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 22-JUN-10 3NM8
TITLE CRYSTAL STRUCTURE OF TYROSINASE FROM BACILLUS MEGATERIUM
COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.14.18.1; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS MEGATERIUM; SOURCE 3 ORGANISM_TAXID: 1404; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET9D
KEYWDS TYROSINASE, TYPE3 COPPER PROTEINS, OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR M.SENDOVSKI,M.KANTEEV,N.ADIR,A.FISHMAN
REVDAT 2 26-FEB-14 3NM8 1 JRNL VERSN REVDAT 1 17-NOV-10 3NM8 0
JRNL AUTH M.SENDOVSKI,M.KANTEEV,V.SHUSTER BEN-YOSEF,N.ADIR,A.FISHMAN JRNL TITL FIRST STRUCTURES OF AN ACTIVE BACTERIAL TYROSINASE REVEAL JRNL TITL 2 COPPER PLASTICITY JRNL REF J.MOL.BIOL. V. 405 227 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21040728 JRNL DOI 10.1016/J.JMB.2010.10.048
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.SENDOVSKI,M.KANTEEV,A.FISHMAN,N.ADIR REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY CRYSTALLOGRAPHIC REMARK 1 TITL 2 ANALYSIS OF A BACTERIAL TYROSINASE FROM BACILLUS MEGATERIUM REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN
REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 38548 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4281 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2809 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.3160 REMARK 3 BIN FREE R VALUE SET COUNT : 309 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4674 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 339 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.01000 REMARK 3 B22 (A**2) : 0.89000 REMARK 3 B33 (A**2) : -1.89000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.166 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.205 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.000 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.003 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS
REMARK 4 REMARK 4 3NM8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JUN-10. REMARK 100 THE RCSB ID CODE IS RCSB060003.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42829 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 73.127 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : 0.09000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.67000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1WX2 REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, ZNAC, SODIUM CACODYLATE, PH REMARK 280 6.1, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.60500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.15500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.24500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.15500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.60500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.24500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -355.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 GLU A 289 REMARK 465 LEU A 290 REMARK 465 ARG A 291 REMARK 465 LYS A 292 REMARK 465 SER A 293 REMARK 465 LYS A 294 REMARK 465 ARG A 295 REMARK 465 SER A 296 REMARK 465 SER A 297 REMARK 465 HIS A 298 REMARK 465 HIS A 299 REMARK 465 HIS A 300 REMARK 465 HIS A 301 REMARK 465 HIS A 302 REMARK 465 HIS A 303 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASN B 3 REMARK 465 GLU B 289 REMARK 465 LEU B 290 REMARK 465 ARG B 291 REMARK 465 LYS B 292 REMARK 465 SER B 293 REMARK 465 LYS B 294 REMARK 465 ARG B 295 REMARK 465 SER B 296 REMARK 465 SER B 297 REMARK 465 HIS B 298 REMARK 465 HIS B 299 REMARK 465 HIS B 300 REMARK 465 HIS B 301 REMARK 465 HIS B 302 REMARK 465 HIS B 303
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 113 -80.04 -111.93 REMARK 500 ASP A 123 40.14 74.32 REMARK 500 LEU A 203 -128.41 52.33 REMARK 500 HIS A 245 63.95 -102.72 REMARK 500 PHE B 113 -80.04 -129.27 REMARK 500 LEU B 203 -122.26 44.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 PHE B 113 24.5 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 501 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 340 O REMARK 620 2 HIS A 60 NE2 120.4 REMARK 620 3 HIS A 42 NE2 102.9 105.2 REMARK 620 4 HOH A 344 O 116.7 102.6 108.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 279 NE2 REMARK 620 2 HOH A 332 O 106.6 REMARK 620 3 HOH A 333 O 128.3 112.1 REMARK 620 4 HOH A 329 O 96.3 111.3 100.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 502 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 231 NE2 REMARK 620 2 HIS A 204 NE2 101.9 REMARK 620 3 HIS A 208 NE2 117.2 80.9 REMARK 620 4 HOH A 344 O 91.6 118.1 142.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 279 NE2 REMARK 620 2 HOH B 330 O 118.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 502 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 231 NE2 REMARK 620 2 HIS B 208 NE2 118.8 REMARK 620 3 HOH B 307 O 84.6 137.2 REMARK 620 4 HIS B 204 NE2 100.2 99.0 112.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 13 ND1 REMARK 620 2 ASP A 287 OD2 108.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 13 ND1 REMARK 620 2 ASP B 287 OD2 99.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 501 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 42 NE2 REMARK 620 2 HIS B 60 NE2 96.7 REMARK 620 3 HOH B 307 O 101.7 103.9 REMARK 620 4 HOH B 454 O 103.3 117.5 127.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 506 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 359 O REMARK 620 2 GLU B 71 OE2 124.1 REMARK 620 3 HOH B 309 O 82.1 132.1 REMARK 620 N 1 2
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 510
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NPY RELATED DB: PDB REMARK 900 RELATED ID: 3NQ0 RELATED DB: PDB REMARK 900 RELATED ID: 3NQ1 RELATED DB: PDB REMARK 900 RELATED ID: 3NQ5 RELATED DB: PDB REMARK 900 RELATED ID: 3NTM RELATED DB: PDB
DBREF 3NM8 A 1 297 UNP B2ZB02 B2ZB02_BACME 1 297 DBREF 3NM8 B 1 297 UNP B2ZB02 B2ZB02_BACME 1 297
SEQADV 3NM8 HIS A 298 UNP B2ZB02 EXPRESSION TAG SEQADV 3NM8 HIS A 299 UNP B2ZB02 EXPRESSION TAG SEQADV 3NM8 HIS A 300 UNP B2ZB02 EXPRESSION TAG SEQADV 3NM8 HIS A 301 UNP B2ZB02 EXPRESSION TAG SEQADV 3NM8 HIS A 302 UNP B2ZB02 EXPRESSION TAG SEQADV 3NM8 HIS A 303 UNP B2ZB02 EXPRESSION TAG SEQADV 3NM8 HIS B 298 UNP B2ZB02 EXPRESSION TAG SEQADV 3NM8 HIS B 299 UNP B2ZB02 EXPRESSION TAG SEQADV 3NM8 HIS B 300 UNP B2ZB02 EXPRESSION TAG SEQADV 3NM8 HIS B 301 UNP B2ZB02 EXPRESSION TAG SEQADV 3NM8 HIS B 302 UNP B2ZB02 EXPRESSION TAG SEQADV 3NM8 HIS B 303 UNP B2ZB02 EXPRESSION TAG
SEQRES 1 A 303 MET SER ASN LYS TYR ARG VAL ARG LYS ASN VAL LEU HIS SEQRES 2 A 303 LEU THR ASP THR GLU LYS ARG ASP PHE VAL ARG THR VAL SEQRES 3 A 303 LEU ILE LEU LYS GLU LYS GLY ILE TYR ASP ARG TYR ILE SEQRES 4 A 303 ALA TRP HIS GLY ALA ALA GLY LYS PHE HIS THR PRO PRO SEQRES 5 A 303 GLY SER ASP ARG ASN ALA ALA HIS MET SER SER ALA PHE SEQRES 6 A 303 LEU PRO TRP HIS ARG GLU TYR LEU LEU ARG PHE GLU ARG SEQRES 7 A 303 ASP LEU GLN SER ILE ASN PRO GLU VAL THR LEU PRO TYR SEQRES 8 A 303 TRP GLU TRP GLU THR ASP ALA GLN MET GLN ASP PRO SER SEQRES 9 A 303 GLN SER GLN ILE TRP SER ALA ASP PHE MET GLY GLY ASN SEQRES 10 A 303 GLY ASN PRO ILE LYS ASP PHE ILE VAL ASP THR GLY PRO SEQRES 11 A 303 PHE ALA ALA GLY ARG TRP THR THR ILE ASP GLU GLN GLY SEQRES 12 A 303 ASN PRO SER GLY GLY LEU LYS ARG ASN PHE GLY ALA THR SEQRES 13 A 303 LYS GLU ALA PRO THR LEU PRO THR ARG ASP ASP VAL LEU SEQRES 14 A 303 ASN ALA LEU LYS ILE THR GLN TYR ASP THR PRO PRO TRP SEQRES 15 A 303 ASP MET THR SER GLN ASN SER PHE ARG ASN GLN LEU GLU SEQRES 16 A 303 GLY PHE ILE ASN GLY PRO GLN LEU HIS ASN ARG VAL HIS SEQRES 17 A 303 ARG TRP VAL GLY GLY GLN MET GLY VAL VAL PRO THR ALA SEQRES 18 A 303 PRO ASN ASP PRO VAL PHE PHE LEU HIS HIS ALA ASN VAL SEQRES 19 A 303 ASP ARG ILE TRP ALA VAL TRP GLN ILE ILE HIS ARG ASN SEQRES 20 A 303 GLN ASN TYR GLN PRO MET LYS ASN GLY PRO PHE GLY GLN SEQRES 21 A 303 ASN PHE ARG ASP PRO MET TYR PRO TRP ASN THR THR PRO SEQRES 22 A 303 GLU ASP VAL MET ASN HIS ARG LYS LEU GLY TYR VAL TYR SEQRES 23 A 303 ASP ILE GLU LEU ARG LYS SER LYS ARG SER SER HIS HIS SEQRES 24 A 303 HIS HIS HIS HIS SEQRES 1 B 303 MET SER ASN LYS TYR ARG VAL ARG LYS ASN VAL LEU HIS SEQRES 2 B 303 LEU THR ASP THR GLU LYS ARG ASP PHE VAL ARG THR VAL SEQRES 3 B 303 LEU ILE LEU LYS GLU LYS GLY ILE TYR ASP ARG TYR ILE SEQRES 4 B 303 ALA TRP HIS GLY ALA ALA GLY LYS PHE HIS THR PRO PRO SEQRES 5 B 303 GLY SER ASP ARG ASN ALA ALA HIS MET SER SER ALA PHE SEQRES 6 B 303 LEU PRO TRP HIS ARG GLU TYR LEU LEU ARG PHE GLU ARG SEQRES 7 B 303 ASP LEU GLN SER ILE ASN PRO GLU VAL THR LEU PRO TYR SEQRES 8 B 303 TRP GLU TRP GLU THR ASP ALA GLN MET GLN ASP PRO SER SEQRES 9 B 303 GLN SER GLN ILE TRP SER ALA ASP PHE MET GLY GLY ASN SEQRES 10 B 303 GLY ASN PRO ILE LYS ASP PHE ILE VAL ASP THR GLY PRO SEQRES 11 B 303 PHE ALA ALA GLY ARG TRP THR THR ILE ASP GLU GLN GLY SEQRES 12 B 303 ASN PRO SER GLY GLY LEU LYS ARG ASN PHE GLY ALA THR SEQRES 13 B 303 LYS GLU ALA PRO THR LEU PRO THR ARG ASP ASP VAL LEU SEQRES 14 B 303 ASN ALA LEU LYS ILE THR GLN TYR ASP THR PRO PRO TRP SEQRES 15 B 303 ASP MET THR SER GLN ASN SER PHE ARG ASN GLN LEU GLU SEQRES 16 B 303 GLY PHE ILE ASN GLY PRO GLN LEU HIS ASN ARG VAL HIS SEQRES 17 B 303 ARG TRP VAL GLY GLY GLN MET GLY VAL VAL PRO THR ALA SEQRES 18 B 303 PRO ASN ASP PRO VAL PHE PHE LEU HIS HIS ALA ASN VAL SEQRES 19 B 303 ASP ARG ILE TRP ALA VAL TRP GLN ILE ILE HIS ARG ASN SEQRES 20 B 303 GLN ASN TYR GLN PRO MET LYS ASN GLY PRO PHE GLY GLN SEQRES 21 B 303 ASN PHE ARG ASP PRO MET TYR PRO TRP ASN THR THR PRO SEQRES 22 B 303 GLU ASP VAL MET ASN HIS ARG LYS LEU GLY TYR VAL TYR SEQRES 23 B 303 ASP ILE GLU LEU ARG LYS SER LYS ARG SER SER HIS HIS SEQRES 24 B 303 HIS HIS HIS HIS
HET CU A 501 1 HET CU A 502 1 HET ZN A 503 1 HET ZN A 504 1 HET ZN A 505 1 HET CL A 506 1 HET CL A 507 1 HET ZN A 304 1 HET CU B 501 1 HET CU B 502 1 HET ZN B 503 1 HET ZN B 504 1 HET ZN B 506 1 HET CL B 507 1 HET CL B 508 1 HET CL B 509 1 HET CL B 510 1
HETNAM CU COPPER (II) ION HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION
FORMUL 3 CU 4(CU 2+) FORMUL 5 ZN 7(ZN 2+) FORMUL 8 CL 6(CL 1-) FORMUL 20 HOH *339(H2 O)
HELIX 1 1 ASN A 10 LEU A 14 5 5 HELIX 2 2 THR A 15 LYS A 32 1 18 HELIX 3 3 GLY A 33 LYS A 47 1 15 HELIX 4 4 ALA A 64 ASN A 84 1 21 HELIX 5 5 GLU A 93 ALA A 98 1 6 HELIX 6 6 ASP A 102 SER A 110 5 9 HELIX 7 7 ASN A 119 ASP A 123 5 5 HELIX 8 8 THR A 164 LYS A 173 1 10 HELIX 9 9 SER A 189 GLY A 196 1 8 HELIX 10 10 GLN A 202 GLY A 212 1 11 HELIX 11 11 GLY A 213 VAL A 217 5 5 HELIX 12 12 THR A 220 ASP A 224 5 5 HELIX 13 13 PRO A 225 HIS A 245 1 21 HELIX 14 14 PRO A 273 MET A 277 5 5 HELIX 15 15 ASN A 278 LEU A 282 5 5 HELIX 16 16 ASN B 10 LEU B 14 5 5 HELIX 17 17 THR B 15 LYS B 32 1 18 HELIX 18 18 GLY B 33 LYS B 47 1 15 HELIX 19 19 ALA B 64 ASN B 84 1 21 HELIX 20 20 GLU B 93 ALA B 98 1 6 HELIX 21 21 ASP B 102 SER B 110 5 9 HELIX 22 22 ASN B 119 ASP B 123 5 5 HELIX 23 23 THR B 164 ILE B 174 1 11 HELIX 24 24 SER B 189 GLY B 196 1 8 HELIX 25 25 GLN B 202 GLY B 212 1 11 HELIX 26 26 GLY B 213 VAL B 217 5 5 HELIX 27 27 THR B 220 ASP B 224 5 5 HELIX 28 28 PRO B 225 HIS B 245 1 21 HELIX 29 29 PRO B 273 MET B 277 5 5
SHEET 1 A 2 ARG A 6 ARG A 8 0 SHEET 2 A 2 TYR A 284 TYR A 286 1 O VAL A 285 N ARG A 8 SHEET 1 B 2 ARG B 6 ARG B 8 0 SHEET 2 B 2 TYR B 284 TYR B 286 1 O VAL B 285 N ARG B 8
LINK CU CU A 501 O HOH A 340 1555 1555 1.84 LINK NE2 HIS A 279 ZN ZN A 504 1555 1555 1.89 LINK NE2 HIS A 231 CU CU A 502 1555 1555 1.91 LINK NE2 HIS B 279 ZN ZN B 504 1555 1555 1.96 LINK NE2 HIS A 204 CU CU A 502 1555 1555 1.96 LINK NE2 HIS B 231 CU CU B 502 1555 1555 1.97 LINK NE2 HIS A 60 CU CU A 501 1555 1555 1.98 LINK NE2 HIS A 208 CU CU A 502 1555 1555 1.99 LINK CU CU A 502 O HOH A 344 1555 1555 2.01 LINK ND1 HIS A 13 ZN ZN A 503 1555 1555 2.04 LINK ND1 HIS B 13 ZN ZN B 503 1555 1555 2.04 LINK ZN ZN A 504 O HOH A 332 1555 1555 2.05 LINK NE2 HIS B 208 CU CU B 502 1555 1555 2.05 LINK NE2 HIS B 42 CU CU B 501 1555 1555 2.10 LINK NE2 HIS B 60 CU CU B 501 1555 1555 2.16 LINK NE2 HIS A 42 CU CU A 501 1555 1555 2.17 LINK CU CU A 501 O HOH A 344 1555 1555 2.20 LINK OD2 ASP B 287 ZN ZN B 503 1555 1555 2.21 LINK CU CU B 502 O HOH B 307 1555 1555 2.22 LINK NE2 HIS A 49 ZN ZN A 304 1555 1555 2.23 LINK CU CU B 501 O HOH B 307 1555 1555 2.25 LINK ZN ZN A 504 O HOH A 333 1555 1555 2.25 LINK CU CU B 501 O HOH B 454 1555 1555 2.25 LINK ZN ZN B 506 O HOH B 359 1555 1555 2.28 LINK ZN ZN A 504 O HOH A 329 1555 1555 2.31 LINK NE2 HIS B 204 CU CU B 502 1555 1555 2.35 LINK OE2 GLU B 71 ZN ZN B 506 1555 1555 2.36 LINK ZN ZN B 504 O HOH B 330 1555 1555 2.45 LINK ND1 HIS A 245 ZN ZN A 505 1555 1555 2.50 LINK ZN ZN B 506 O HOH B 309 1555 1555 2.50 LINK ZN ZN A 503 OD2 ASP A 287 1555 1555 1.46
CISPEP 1 THR A 50 PRO A 51 0 -0.06 CISPEP 2 PRO A 180 PRO A 181 0 0.18 CISPEP 3 GLY A 200 PRO A 201 0 -0.07 CISPEP 4 GLN A 251 PRO A 252 0 0.18 CISPEP 5 TYR A 267 PRO A 268 0 0.66 CISPEP 6 THR B 50 PRO B 51 0 -0.16 CISPEP 7 PRO B 180 PRO B 181 0 11.95 CISPEP 8 GLY B 200 PRO B 201 0 -0.01 CISPEP 9 GLN B 251 PRO B 252 0 0.13 CISPEP 10 TYR B 267 PRO B 268 0 0.58
SITE 1 AC1 6 HIS A 42 HIS A 60 HOH A 339 HOH A 340 SITE 2 AC1 6 HOH A 344 CU A 502 SITE 1 AC2 5 HIS A 204 HIS A 208 HIS A 231 HOH A 344 SITE 2 AC2 5 CU A 501 SITE 1 AC3 4 HIS A 13 ASP A 287 CL A 506 CL A 507 SITE 1 AC4 4 HIS A 279 HOH A 329 HOH A 332 HOH A 333 SITE 1 AC5 1 HIS A 245 SITE 1 AC6 5 LYS A 9 HIS A 13 ASP A 287 ZN A 503 SITE 2 AC6 5 CL A 507 SITE 1 AC7 6 HIS A 13 ASP A 287 ILE A 288 ZN A 503 SITE 2 AC7 6 CL A 506 GLN B 101 SITE 1 AC8 6 HIS B 42 HIS B 60 HOH B 307 HOH B 308 SITE 2 AC8 6 HOH B 454 CU B 502 SITE 1 AC9 5 HIS B 204 HIS B 208 HIS B 231 HOH B 307 SITE 2 AC9 5 CU B 501 SITE 1 BC1 4 HIS B 13 ASP B 287 CL B 507 CL B 508 SITE 1 BC2 4 HIS B 279 HOH B 330 CL B 509 CL B 510 SITE 1 BC3 1 HIS A 49 SITE 1 BC4 5 GLU B 71 ARG B 75 THR B 271 HOH B 309 SITE 2 BC4 5 HOH B 359 SITE 1 BC5 8 MET A 100 GLN A 101 HOH A 407 HIS B 13 SITE 2 BC5 8 ASP B 287 ILE B 288 ZN B 503 CL B 508 SITE 1 BC6 5 LYS B 9 HIS B 13 ASP B 287 ZN B 503 SITE 2 BC6 5 CL B 507 SITE 1 BC7 5 ALA B 239 HIS B 279 HOH B 343 ZN B 504 SITE 2 BC7 5 CL B 510 SITE 1 BC8 5 ALA B 239 ILE B 243 HIS B 279 ZN B 504 SITE 2 BC8 5 CL B 509
CRYST1 51.210 84.490 146.310 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.019527 0.000000 0.000000 0.00000
SCALE2 0.000000 0.011836 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006835 0.00000