10 20 30 40 50 60 70 80 3NDR - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 08-JUN-10 3NDR
TITLE CRYSTAL STRUCTURE OF TETRAMERIC PYRIDOXAL 4-DEHYDROGENASE FROM TITLE 2 MESORHIZOBIUM LOTI
COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-OXOACYL-(ACYL-CARRIER PROTEIN) REDUCTASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PYRIDOXAL 4-DEHYDROGENASE; COMPND 5 EC: 1.1.1.107; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MESORHIZOBIUM LOTI; SOURCE 3 ORGANISM_TAXID: 381; SOURCE 4 GENE: MLR6807, PLDH-T; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21A
KEYWDS PYRIDOXAL, TPLDH, 4-PYRIDOXOLACTONE, SHORT CHAIN KEYWDS 2 DEHYDROGENASE/REDUCTASE, OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR H.N.CHU
REVDAT 1 08-JUN-11 3NDR 0
JRNL AUTH H.N.CHU,J.KOBAYASHI,Y.YOSHIKANE,B.MIKAMI,T.YAGI JRNL TITL CRYSTAL STRUCTURE OF TETRAMERIC PYRIDOXAL 4-DEHYDROGENASE JRNL TITL 2 FROM MESORHIZOBIUM LOTI JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.N.CHU,J.KOBAYASHI,Y.YOSHIKANE,B.MIKAMI,T.YAGI REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY ANALYSIS OF SDR-TYPE REMARK 1 TITL 2 PYRIDOXAL DEHYDROGENASE FROM MESORHIZOBIUM LOTI REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 66 718 2010 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 20516609 REMARK 1 DOI 10.1107/S1744309110015101
REMARK 2 REMARK 2 RESOLUTION. 2.88 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 16988 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 916 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.7363 - 5.5059 1.00 2587 128 0.1842 0.2346 REMARK 3 2 5.5059 - 4.3719 1.00 2492 139 0.1565 0.1977 REMARK 3 3 4.3719 - 3.8198 0.98 2466 124 0.1527 0.2043 REMARK 3 4 3.8198 - 3.4708 0.96 2366 143 0.1708 0.2414 REMARK 3 5 3.4708 - 3.2221 0.95 2361 128 0.2127 0.2856 REMARK 3 6 3.2221 - 3.0322 0.96 2361 126 0.2269 0.3264 REMARK 3 7 3.0322 - 2.8804 0.95 2355 128 0.2403 0.3235 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 14.07 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.89380 REMARK 3 B22 (A**2) : -3.50570 REMARK 3 B33 (A**2) : -1.38820 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : 10.47440 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 7444 REMARK 3 ANGLE : 1.173 10132 REMARK 3 CHIRALITY : 0.075 1204 REMARK 3 PLANARITY : 0.003 1292 REMARK 3 DIHEDRAL : 20.913 2612 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: chain A and (resseq 3:50 or resseq 54:188 REMARK 3 or resseq 197:248 ) REMARK 3 SELECTION : chain B and (resseq 3:50 or resseq 54:188 REMARK 3 or resseq 197:248 ) REMARK 3 ATOM PAIRS NUMBER : 1707 REMARK 3 RMSD : 0.050 REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: chain A and (resseq 3:50 or resseq 54:188 REMARK 3 or resseq 197:248 ) REMARK 3 SELECTION : chain C and (resseq 3:50 or resseq 54:188 REMARK 3 or resseq 197:248 ) REMARK 3 ATOM PAIRS NUMBER : 1707 REMARK 3 RMSD : 0.053 REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: chain A and (resseq 3:50 or resseq 54:188 REMARK 3 or resseq 197:248 ) REMARK 3 SELECTION : chain D and (resseq 3:50 or resseq 54:188 REMARK 3 or resseq 197:248 ) REMARK 3 ATOM PAIRS NUMBER : 1707 REMARK 3 RMSD : 0.051 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 3NDR COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-JUN-10. REMARK 100 THE RCSB ID CODE IS RCSB059701.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16995 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.880 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2EW8 REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE, 0.1M TRIS-HCL, REMARK 280 30% PEG4000, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293.0K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.55450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 140 -118.81 -92.64 REMARK 500 SER A 141 149.11 179.48 REMARK 500 MSE A 151 52.69 -159.60 REMARK 500 SER A 189 -167.69 -78.49 REMARK 500 PRO A 196 -9.06 -55.48 REMARK 500 ASP A 242 25.00 -152.75 REMARK 500 ALA B 140 -121.16 -93.29 REMARK 500 SER B 141 148.86 -179.44 REMARK 500 MSE B 151 51.28 -160.74 REMARK 500 SER B 189 -158.48 -70.93 REMARK 500 ASP B 242 23.91 -153.58 REMARK 500 ALA C 140 -117.86 -94.22 REMARK 500 SER C 141 150.29 179.75 REMARK 500 MSE C 151 50.22 -163.28 REMARK 500 PRO C 196 1.71 -68.02 REMARK 500 ASP C 242 24.22 -151.40 REMARK 500 ALA D 140 -119.48 -91.90 REMARK 500 SER D 141 147.05 179.29 REMARK 500 MSE D 151 52.34 -162.17 REMARK 500 ASP D 242 25.67 -152.38 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 362 DISTANCE = 5.08 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD C 251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD D 251
DBREF 3NDR A 2 248 UNP Q988B7 Q988B7_RHILO 2 248 DBREF 3NDR B 2 248 UNP Q988B7 Q988B7_RHILO 2 248 DBREF 3NDR C 2 248 UNP Q988B7 Q988B7_RHILO 2 248 DBREF 3NDR D 2 248 UNP Q988B7 Q988B7_RHILO 2 248
SEQRES 1 A 247 THR GLU ARG LEU ALA GLY LYS THR ALA LEU VAL THR GLY SEQRES 2 A 247 ALA ALA GLN GLY ILE GLY LYS ALA ILE ALA ALA ARG LEU SEQRES 3 A 247 ALA ALA ASP GLY ALA THR VAL ILE VAL SER ASP ILE ASN SEQRES 4 A 247 ALA GLU GLY ALA LYS ALA ALA ALA ALA SER ILE GLY LYS SEQRES 5 A 247 LYS ALA ARG ALA ILE ALA ALA ASP ILE SER ASP PRO GLY SEQRES 6 A 247 SER VAL LYS ALA LEU PHE ALA GLU ILE GLN ALA LEU THR SEQRES 7 A 247 GLY GLY ILE ASP ILE LEU VAL ASN ASN ALA SER ILE VAL SEQRES 8 A 247 PRO PHE VAL ALA TRP ASP ASP VAL ASP LEU ASP HIS TRP SEQRES 9 A 247 ARG LYS ILE ILE ASP VAL ASN LEU THR GLY THR PHE ILE SEQRES 10 A 247 VAL THR ARG ALA GLY THR ASP GLN MSE ARG ALA ALA GLY SEQRES 11 A 247 LYS ALA GLY ARG VAL ILE SER ILE ALA SER ASN THR PHE SEQRES 12 A 247 PHE ALA GLY THR PRO ASN MSE ALA ALA TYR VAL ALA ALA SEQRES 13 A 247 LYS GLY GLY VAL ILE GLY PHE THR ARG ALA LEU ALA THR SEQRES 14 A 247 GLU LEU GLY LYS TYR ASN ILE THR ALA ASN ALA VAL THR SEQRES 15 A 247 PRO GLY LEU ILE GLU SER ASP GLY VAL LYS ALA SER PRO SEQRES 16 A 247 HIS ASN GLU ALA PHE GLY PHE VAL GLU MSE LEU GLN ALA SEQRES 17 A 247 MSE LYS GLY LYS GLY GLN PRO GLU HIS ILE ALA ASP VAL SEQRES 18 A 247 VAL SER PHE LEU ALA SER ASP ASP ALA ARG TRP ILE THR SEQRES 19 A 247 GLY GLN THR LEU ASN VAL ASP ALA GLY MSE VAL ARG HIS SEQRES 1 B 247 THR GLU ARG LEU ALA GLY LYS THR ALA LEU VAL THR GLY SEQRES 2 B 247 ALA ALA GLN GLY ILE GLY LYS ALA ILE ALA ALA ARG LEU SEQRES 3 B 247 ALA ALA ASP GLY ALA THR VAL ILE VAL SER ASP ILE ASN SEQRES 4 B 247 ALA GLU GLY ALA LYS ALA ALA ALA ALA SER ILE GLY LYS SEQRES 5 B 247 LYS ALA ARG ALA ILE ALA ALA ASP ILE SER ASP PRO GLY SEQRES 6 B 247 SER VAL LYS ALA LEU PHE ALA GLU ILE GLN ALA LEU THR SEQRES 7 B 247 GLY GLY ILE ASP ILE LEU VAL ASN ASN ALA SER ILE VAL SEQRES 8 B 247 PRO PHE VAL ALA TRP ASP ASP VAL ASP LEU ASP HIS TRP SEQRES 9 B 247 ARG LYS ILE ILE ASP VAL ASN LEU THR GLY THR PHE ILE SEQRES 10 B 247 VAL THR ARG ALA GLY THR ASP GLN MSE ARG ALA ALA GLY SEQRES 11 B 247 LYS ALA GLY ARG VAL ILE SER ILE ALA SER ASN THR PHE SEQRES 12 B 247 PHE ALA GLY THR PRO ASN MSE ALA ALA TYR VAL ALA ALA SEQRES 13 B 247 LYS GLY GLY VAL ILE GLY PHE THR ARG ALA LEU ALA THR SEQRES 14 B 247 GLU LEU GLY LYS TYR ASN ILE THR ALA ASN ALA VAL THR SEQRES 15 B 247 PRO GLY LEU ILE GLU SER ASP GLY VAL LYS ALA SER PRO SEQRES 16 B 247 HIS ASN GLU ALA PHE GLY PHE VAL GLU MSE LEU GLN ALA SEQRES 17 B 247 MSE LYS GLY LYS GLY GLN PRO GLU HIS ILE ALA ASP VAL SEQRES 18 B 247 VAL SER PHE LEU ALA SER ASP ASP ALA ARG TRP ILE THR SEQRES 19 B 247 GLY GLN THR LEU ASN VAL ASP ALA GLY MSE VAL ARG HIS SEQRES 1 C 247 THR GLU ARG LEU ALA GLY LYS THR ALA LEU VAL THR GLY SEQRES 2 C 247 ALA ALA GLN GLY ILE GLY LYS ALA ILE ALA ALA ARG LEU SEQRES 3 C 247 ALA ALA ASP GLY ALA THR VAL ILE VAL SER ASP ILE ASN SEQRES 4 C 247 ALA GLU GLY ALA LYS ALA ALA ALA ALA SER ILE GLY LYS SEQRES 5 C 247 LYS ALA ARG ALA ILE ALA ALA ASP ILE SER ASP PRO GLY SEQRES 6 C 247 SER VAL LYS ALA LEU PHE ALA GLU ILE GLN ALA LEU THR SEQRES 7 C 247 GLY GLY ILE ASP ILE LEU VAL ASN ASN ALA SER ILE VAL SEQRES 8 C 247 PRO PHE VAL ALA TRP ASP ASP VAL ASP LEU ASP HIS TRP SEQRES 9 C 247 ARG LYS ILE ILE ASP VAL ASN LEU THR GLY THR PHE ILE SEQRES 10 C 247 VAL THR ARG ALA GLY THR ASP GLN MSE ARG ALA ALA GLY SEQRES 11 C 247 LYS ALA GLY ARG VAL ILE SER ILE ALA SER ASN THR PHE SEQRES 12 C 247 PHE ALA GLY THR PRO ASN MSE ALA ALA TYR VAL ALA ALA SEQRES 13 C 247 LYS GLY GLY VAL ILE GLY PHE THR ARG ALA LEU ALA THR SEQRES 14 C 247 GLU LEU GLY LYS TYR ASN ILE THR ALA ASN ALA VAL THR SEQRES 15 C 247 PRO GLY LEU ILE GLU SER ASP GLY VAL LYS ALA SER PRO SEQRES 16 C 247 HIS ASN GLU ALA PHE GLY PHE VAL GLU MSE LEU GLN ALA SEQRES 17 C 247 MSE LYS GLY LYS GLY GLN PRO GLU HIS ILE ALA ASP VAL SEQRES 18 C 247 VAL SER PHE LEU ALA SER ASP ASP ALA ARG TRP ILE THR SEQRES 19 C 247 GLY GLN THR LEU ASN VAL ASP ALA GLY MSE VAL ARG HIS SEQRES 1 D 247 THR GLU ARG LEU ALA GLY LYS THR ALA LEU VAL THR GLY SEQRES 2 D 247 ALA ALA GLN GLY ILE GLY LYS ALA ILE ALA ALA ARG LEU SEQRES 3 D 247 ALA ALA ASP GLY ALA THR VAL ILE VAL SER ASP ILE ASN SEQRES 4 D 247 ALA GLU GLY ALA LYS ALA ALA ALA ALA SER ILE GLY LYS SEQRES 5 D 247 LYS ALA ARG ALA ILE ALA ALA ASP ILE SER ASP PRO GLY SEQRES 6 D 247 SER VAL LYS ALA LEU PHE ALA GLU ILE GLN ALA LEU THR SEQRES 7 D 247 GLY GLY ILE ASP ILE LEU VAL ASN ASN ALA SER ILE VAL SEQRES 8 D 247 PRO PHE VAL ALA TRP ASP ASP VAL ASP LEU ASP HIS TRP SEQRES 9 D 247 ARG LYS ILE ILE ASP VAL ASN LEU THR GLY THR PHE ILE SEQRES 10 D 247 VAL THR ARG ALA GLY THR ASP GLN MSE ARG ALA ALA GLY SEQRES 11 D 247 LYS ALA GLY ARG VAL ILE SER ILE ALA SER ASN THR PHE SEQRES 12 D 247 PHE ALA GLY THR PRO ASN MSE ALA ALA TYR VAL ALA ALA SEQRES 13 D 247 LYS GLY GLY VAL ILE GLY PHE THR ARG ALA LEU ALA THR SEQRES 14 D 247 GLU LEU GLY LYS TYR ASN ILE THR ALA ASN ALA VAL THR SEQRES 15 D 247 PRO GLY LEU ILE GLU SER ASP GLY VAL LYS ALA SER PRO SEQRES 16 D 247 HIS ASN GLU ALA PHE GLY PHE VAL GLU MSE LEU GLN ALA SEQRES 17 D 247 MSE LYS GLY LYS GLY GLN PRO GLU HIS ILE ALA ASP VAL SEQRES 18 D 247 VAL SER PHE LEU ALA SER ASP ASP ALA ARG TRP ILE THR SEQRES 19 D 247 GLY GLN THR LEU ASN VAL ASP ALA GLY MSE VAL ARG HIS
MODRES 3NDR MSE A 127 MET SELENOMETHIONINE MODRES 3NDR MSE A 151 MET SELENOMETHIONINE MODRES 3NDR MSE A 206 MET SELENOMETHIONINE MODRES 3NDR MSE A 210 MET SELENOMETHIONINE MODRES 3NDR MSE A 245 MET SELENOMETHIONINE MODRES 3NDR MSE B 127 MET SELENOMETHIONINE MODRES 3NDR MSE B 151 MET SELENOMETHIONINE MODRES 3NDR MSE B 206 MET SELENOMETHIONINE MODRES 3NDR MSE B 210 MET SELENOMETHIONINE MODRES 3NDR MSE B 245 MET SELENOMETHIONINE MODRES 3NDR MSE C 127 MET SELENOMETHIONINE MODRES 3NDR MSE C 151 MET SELENOMETHIONINE MODRES 3NDR MSE C 206 MET SELENOMETHIONINE MODRES 3NDR MSE C 210 MET SELENOMETHIONINE MODRES 3NDR MSE C 245 MET SELENOMETHIONINE MODRES 3NDR MSE D 127 MET SELENOMETHIONINE MODRES 3NDR MSE D 151 MET SELENOMETHIONINE MODRES 3NDR MSE D 206 MET SELENOMETHIONINE MODRES 3NDR MSE D 210 MET SELENOMETHIONINE MODRES 3NDR MSE D 245 MET SELENOMETHIONINE
HET MSE A 127 8 HET MSE A 151 8 HET MSE A 206 8 HET MSE A 210 8 HET MSE A 245 8 HET MSE B 127 8 HET MSE B 151 8 HET MSE B 206 8 HET MSE B 210 8 HET MSE B 245 8 HET MSE C 127 8 HET MSE C 151 8 HET MSE C 206 8 HET MSE C 210 8 HET MSE C 245 8 HET MSE D 127 8 HET MSE D 151 8 HET MSE D 206 8 HET MSE D 210 8 HET MSE D 245 8 HET NAD A 251 44 HET NAD B 251 44 HET NAD C 251 44 HET NAD D 251 44
HETNAM MSE SELENOMETHIONINE HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE
FORMUL 1 MSE 20(C5 H11 N O2 SE) FORMUL 5 NAD 4(C21 H27 N7 O14 P2) FORMUL 9 HOH *60(H2 O)
HELIX 1 1 GLN A 17 ASP A 30 1 14 HELIX 2 2 ASN A 40 GLY A 52 1 13 HELIX 3 3 ASP A 64 GLY A 80 1 17 HELIX 4 4 ALA A 96 VAL A 100 5 5 HELIX 5 5 ASP A 101 LEU A 113 1 13 HELIX 6 6 LEU A 113 ALA A 130 1 18 HELIX 7 7 ASN A 142 GLY A 147 1 6 HELIX 8 8 MSE A 151 GLY A 173 1 23 HELIX 9 9 LYS A 174 ASN A 176 5 3 HELIX 10 10 SER A 189 ALA A 194 1 6 HELIX 11 11 SER A 195 GLU A 199 5 5 HELIX 12 12 ALA A 200 GLN A 208 1 9 HELIX 13 13 GLN A 215 ALA A 227 1 13 HELIX 14 14 SER A 228 ARG A 232 5 5 HELIX 15 15 GLN B 17 ASP B 30 1 14 HELIX 16 16 ASN B 40 GLY B 52 1 13 HELIX 17 17 ASP B 64 GLY B 80 1 17 HELIX 18 18 ALA B 96 VAL B 100 5 5 HELIX 19 19 ASP B 101 LEU B 113 1 13 HELIX 20 20 LEU B 113 ALA B 130 1 18 HELIX 21 21 ASN B 142 GLY B 147 1 6 HELIX 22 22 MSE B 151 GLY B 173 1 23 HELIX 23 23 LYS B 174 ASN B 176 5 3 HELIX 24 24 SER B 189 ALA B 194 1 6 HELIX 25 25 SER B 195 GLU B 199 5 5 HELIX 26 26 ALA B 200 GLN B 208 1 9 HELIX 27 27 GLN B 215 SER B 228 1 14 HELIX 28 28 ASP B 229 ARG B 232 5 4 HELIX 29 29 GLN C 17 ASP C 30 1 14 HELIX 30 30 ASN C 40 GLY C 52 1 13 HELIX 31 31 ASP C 64 GLY C 80 1 17 HELIX 32 32 ALA C 96 VAL C 100 5 5 HELIX 33 33 ASP C 101 LEU C 113 1 13 HELIX 34 34 LEU C 113 ALA C 130 1 18 HELIX 35 35 ASN C 142 GLY C 147 1 6 HELIX 36 36 MSE C 151 GLY C 173 1 23 HELIX 37 37 LYS C 174 ASN C 176 5 3 HELIX 38 38 SER C 189 ALA C 194 1 6 HELIX 39 39 HIS C 197 GLU C 199 5 3 HELIX 40 40 ALA C 200 GLN C 208 1 9 HELIX 41 41 GLN C 215 SER C 228 1 14 HELIX 42 42 ASP C 229 ARG C 232 5 4 HELIX 43 43 GLN D 17 ASP D 30 1 14 HELIX 44 44 ASN D 40 GLY D 52 1 13 HELIX 45 45 ASP D 64 GLY D 80 1 17 HELIX 46 46 ALA D 96 VAL D 100 5 5 HELIX 47 47 ASP D 101 LEU D 113 1 13 HELIX 48 48 LEU D 113 ALA D 130 1 18 HELIX 49 49 ASN D 142 GLY D 147 1 6 HELIX 50 50 MSE D 151 GLY D 173 1 23 HELIX 51 51 LYS D 174 ASN D 176 5 3 HELIX 52 52 SER D 189 ALA D 194 1 6 HELIX 53 53 SER D 195 GLU D 199 5 5 HELIX 54 54 ALA D 200 GLN D 208 1 9 HELIX 55 55 GLN D 215 ALA D 227 1 13 HELIX 56 56 SER D 228 ARG D 232 5 5
SHEET 1 A 7 ALA A 55 ALA A 59 0 SHEET 2 A 7 THR A 33 ASP A 38 1 N VAL A 36 O ARG A 56 SHEET 3 A 7 THR A 9 VAL A 12 1 N ALA A 10 O ILE A 35 SHEET 4 A 7 ILE A 84 ASN A 87 1 O VAL A 86 N LEU A 11 SHEET 5 A 7 ARG A 135 ILE A 139 1 O ILE A 139 N ASN A 87 SHEET 6 A 7 THR A 178 PRO A 184 1 O THR A 178 N VAL A 136 SHEET 7 A 7 THR A 238 VAL A 241 1 O LEU A 239 N THR A 183 SHEET 1 B 7 ALA B 55 ALA B 59 0 SHEET 2 B 7 THR B 33 ASP B 38 1 N VAL B 36 O ARG B 56 SHEET 3 B 7 THR B 9 VAL B 12 1 N ALA B 10 O ILE B 35 SHEET 4 B 7 ILE B 84 ASN B 87 1 O ILE B 84 N LEU B 11 SHEET 5 B 7 ARG B 135 ILE B 139 1 O ILE B 139 N ASN B 87 SHEET 6 B 7 THR B 178 PRO B 184 1 O THR B 178 N VAL B 136 SHEET 7 B 7 THR B 238 VAL B 241 1 O LEU B 239 N THR B 183 SHEET 1 C 7 ALA C 55 ALA C 59 0 SHEET 2 C 7 THR C 33 ASP C 38 1 N VAL C 36 O ARG C 56 SHEET 3 C 7 THR C 9 VAL C 12 1 N ALA C 10 O ILE C 35 SHEET 4 C 7 ILE C 84 ASN C 87 1 O VAL C 86 N LEU C 11 SHEET 5 C 7 ARG C 135 ILE C 139 1 O ARG C 135 N LEU C 85 SHEET 6 C 7 THR C 178 PRO C 184 1 O ASN C 180 N VAL C 136 SHEET 7 C 7 THR C 238 VAL C 241 1 O LEU C 239 N THR C 183 SHEET 1 D 7 ALA D 55 ALA D 59 0 SHEET 2 D 7 THR D 33 ASP D 38 1 N VAL D 36 O ARG D 56 SHEET 3 D 7 THR D 9 VAL D 12 1 N ALA D 10 O ILE D 35 SHEET 4 D 7 ILE D 84 ASN D 87 1 O VAL D 86 N LEU D 11 SHEET 5 D 7 ARG D 135 ILE D 139 1 O ILE D 137 N LEU D 85 SHEET 6 D 7 THR D 178 PRO D 184 1 O ASN D 180 N VAL D 136 SHEET 7 D 7 THR D 238 VAL D 241 1 O LEU D 239 N THR D 183
LINK C GLN A 126 N MSE A 127 1555 1555 1.33 LINK C MSE A 127 N ARG A 128 1555 1555 1.32 LINK C ASN A 150 N MSE A 151 1555 1555 1.33 LINK C MSE A 151 N ALA A 152 1555 1555 1.33 LINK C GLU A 205 N MSE A 206 1555 1555 1.33 LINK C MSE A 206 N LEU A 207 1555 1555 1.33 LINK C ALA A 209 N MSE A 210 1555 1555 1.33 LINK C MSE A 210 N LYS A 211 1555 1555 1.33 LINK C GLY A 244 N MSE A 245 1555 1555 1.32 LINK C MSE A 245 N VAL A 246 1555 1555 1.33 LINK C GLN B 126 N MSE B 127 1555 1555 1.33 LINK C MSE B 127 N ARG B 128 1555 1555 1.32 LINK C ASN B 150 N MSE B 151 1555 1555 1.33 LINK C MSE B 151 N ALA B 152 1555 1555 1.33 LINK C GLU B 205 N MSE B 206 1555 1555 1.32 LINK C MSE B 206 N LEU B 207 1555 1555 1.34 LINK C ALA B 209 N MSE B 210 1555 1555 1.33 LINK C MSE B 210 N LYS B 211 1555 1555 1.33 LINK C GLY B 244 N MSE B 245 1555 1555 1.32 LINK C MSE B 245 N VAL B 246 1555 1555 1.33 LINK C GLN C 126 N MSE C 127 1555 1555 1.33 LINK C MSE C 127 N ARG C 128 1555 1555 1.32 LINK C ASN C 150 N MSE C 151 1555 1555 1.33 LINK C MSE C 151 N ALA C 152 1555 1555 1.33 LINK C GLU C 205 N MSE C 206 1555 1555 1.32 LINK C MSE C 206 N LEU C 207 1555 1555 1.33 LINK C ALA C 209 N MSE C 210 1555 1555 1.34 LINK C MSE C 210 N LYS C 211 1555 1555 1.33 LINK C GLY C 244 N MSE C 245 1555 1555 1.33 LINK C MSE C 245 N VAL C 246 1555 1555 1.32 LINK C GLN D 126 N MSE D 127 1555 1555 1.33 LINK C MSE D 127 N ARG D 128 1555 1555 1.33 LINK C ASN D 150 N MSE D 151 1555 1555 1.32 LINK C MSE D 151 N ALA D 152 1555 1555 1.34 LINK C GLU D 205 N MSE D 206 1555 1555 1.33 LINK C MSE D 206 N LEU D 207 1555 1555 1.33 LINK C ALA D 209 N MSE D 210 1555 1555 1.34 LINK C MSE D 210 N LYS D 211 1555 1555 1.33 LINK C GLY D 244 N MSE D 245 1555 1555 1.33 LINK C MSE D 245 N VAL D 246 1555 1555 1.32
SITE 1 AC1 27 GLY A 14 GLN A 17 GLY A 18 ILE A 19 SITE 2 AC1 27 ASP A 38 ILE A 39 ALA A 60 ASP A 61 SITE 3 AC1 27 ILE A 62 ASN A 88 ALA A 89 SER A 90 SITE 4 AC1 27 VAL A 111 ILE A 139 ALA A 140 SER A 141 SITE 5 AC1 27 TYR A 154 LYS A 158 PRO A 184 GLY A 185 SITE 6 AC1 27 LEU A 186 ILE A 187 SER A 189 GLY A 191 SITE 7 AC1 27 VAL A 192 HOH A 301 HOH A 357 SITE 1 AC2 26 GLY B 14 GLN B 17 GLY B 18 ILE B 19 SITE 2 AC2 26 ASP B 38 ILE B 39 ALA B 60 ASP B 61 SITE 3 AC2 26 ILE B 62 ASN B 88 ALA B 89 SER B 90 SITE 4 AC2 26 ILE B 139 ALA B 140 SER B 141 TYR B 154 SITE 5 AC2 26 LYS B 158 PRO B 184 GLY B 185 LEU B 186 SITE 6 AC2 26 ILE B 187 SER B 189 GLY B 191 VAL B 192 SITE 7 AC2 26 HOH B 312 HOH B 347 SITE 1 AC3 25 GLY C 14 GLN C 17 GLY C 18 ILE C 19 SITE 2 AC3 25 ASP C 38 ILE C 39 ALA C 60 ASP C 61 SITE 3 AC3 25 ILE C 62 ASN C 88 ALA C 89 SER C 90 SITE 4 AC3 25 VAL C 92 ILE C 139 ALA C 140 SER C 141 SITE 5 AC3 25 TYR C 154 LYS C 158 PRO C 184 GLY C 185 SITE 6 AC3 25 LEU C 186 ILE C 187 SER C 189 GLY C 191 SITE 7 AC3 25 VAL C 192 SITE 1 AC4 25 GLY D 14 GLN D 17 GLY D 18 ILE D 19 SITE 2 AC4 25 ASP D 38 ILE D 39 ALA D 60 ASP D 61 SITE 3 AC4 25 ILE D 62 ASN D 88 ALA D 89 SER D 90 SITE 4 AC4 25 ILE D 139 ALA D 140 SER D 141 TYR D 154 SITE 5 AC4 25 LYS D 158 PRO D 184 GLY D 185 LEU D 186 SITE 6 AC4 25 ILE D 187 SER D 189 GLY D 191 VAL D 192 SITE 7 AC4 25 HOH D 350
CRYST1 86.203 51.109 91.732 90.00 89.36 90.00 P 1 21 1 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011601 0.000000 -0.000130 0.00000
SCALE2 0.000000 0.019566 0.000000 0.00000
SCALE3 0.000000 0.000000 0.010902 0.00000