10 20 30 40 50 60 70 80 3NAD - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER LYASE 01-JUN-10 3NAD
TITLE CRYSTAL STRUCTURE OF PHENOLIC ACID DECARBOXYLASE FROM BACILLUS PUMILUS TITLE 2 UI-670
COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERULATE DECARBOXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FERULIC ACID DECARBOXYLASE; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS PUMILUS; SOURCE 3 ORGANISM_COMMON: BACILLUS MESENTERICUS; SOURCE 4 ORGANISM_TAXID: 1408; SOURCE 5 STRAIN: UI-670; SOURCE 6 GENE: FDC, PADC; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PKK223-3
KEYWDS BETA BARREL, LIPOCALIN, BIOCATALYSIS, DECARBOXYLASE, LYASE
EXPDTA X-RAY DIFFRACTION
AUTHOR A.MATTE,S.GROSSE,H.BERGERON,K.ABOKITSE,P.C.K.LAU
REVDAT 2 11-APR-12 3NAD 1 JRNL VERSN REVDAT 1 10-NOV-10 3NAD 0
JRNL AUTH A.MATTE,S.GROSSE,H.BERGERON,K.ABOKITSE,P.C.LAU JRNL TITL STRUCTURAL ANALYSIS OF BACILLUS PUMILUS PHENOLIC ACID JRNL TITL 2 DECARBOXYLASE, A LIPOCALIN-FOLD ENZYME. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 66 1407 2010 JRNL REFN ESSN 1744-3091 JRNL PMID 21045284 JRNL DOI 10.1107/S174430911003246X
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.RODRIGUEZ,I.ANGULO,B.DE LAS RIVAS,N.CAMPILLO,J.A.PAEZ, REMARK 1 AUTH 2 R.MUNOZ,J.M.MANCHENO REMARK 1 TITL P-COUMARIC ACID DECARBOXYLASE FROM LACTOBACILLUS PLANTARUM: REMARK 1 TITL 2 STRUCTURAL INSIGHTS INTO THE ACTIVE SITE AND DECARBOXYLATION REMARK 1 TITL 3 CATALYTIC MECHANISM REMARK 1 REF PROTEINS: V. 78 1662 2010 REMARK 1 REF 2 STRUCT.,FUNCT.,GENET. REMARK 1 REFN ISSN 0887-3585 REMARK 1 PMID 20112419 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.R.FLOWER,A.C.T.NORTH,T.K.ATTWOOD REMARK 1 TITL STRUCTURE AND SEQUENCE RELATIONSHIPS IN THE LIPCALINS AND REMARK 1 TITL 2 RELATED PROTEINS REMARK 1 REF PROTEIN SCI. V. 2 753 1993 REMARK 1 REFN ISSN 0961-8368 REMARK 1 PMID 7684291 REMARK 1 REFERENCE 3 REMARK 1 AUTH R.E.BISHOP REMARK 1 TITL THE BACTERIAL LIPOCALINS. REMARK 1 REF BIOCHIM.BIOPHYS.ACTA V.1482 73 2000 REMARK 1 REFN ISSN 0006-3002 REMARK 1 PMID 11058749 REMARK 1 REFERENCE 4 REMARK 1 AUTH N.P.TRAN,J.GURY,V.DARTOIS,T.K.C.NGUYEN,H.SERAUT, REMARK 1 AUTH 2 L.BARTHELMEBS,P.GERVAIS,J.-F.CAVIN REMARK 1 TITL PHENOLIC-ACID MEDIATED REGULATION OF THE PADC GENE ENCODING REMARK 1 TITL 2 THE PHENOLIC ACID DECARBOXYLASE OF BACILLUS SUBTILUS REMARK 1 REF J.BACTERIOL. V. 190 3213 2008 REMARK 1 REFN ISSN 0021-9193 REMARK 1 PMID 18326577 REMARK 1 REFERENCE 5 REMARK 1 AUTH A.ZAGO,G.DEGRASSI,C.V.BRUSCHI REMARK 1 TITL CLONING, SEQUENCING AND EXPRESSION IN ESCHERICHIA COLI OF REMARK 1 TITL 2 THE BACILLUS PUMILUS GENE FOR FERULIC ACID DECARBOXYLASE REMARK 1 REF APPL.ENVIRON.MICROBIOL. V. 61 4484 1995 REMARK 1 REFN ISSN 0099-2240 REMARK 1 PMID 8534115
REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0069 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 52132 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2653 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.69 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.73 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3316 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 162 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2666 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 368 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.78000 REMARK 3 B22 (A**2) : -0.86000 REMARK 3 B33 (A**2) : 0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.087 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.445 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2768 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3766 ; 1.059 ; 1.930 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 326 ; 6.182 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 145 ;33.524 ;23.931 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 464 ;11.289 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ; 7.795 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 391 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2149 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1602 ; 0.522 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2624 ; 1.046 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1166 ; 1.782 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1138 ; 3.047 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 161 REMARK 3 ORIGIN FOR THE GROUP (A): -15.3567 -31.2526 -18.3740 REMARK 3 T TENSOR REMARK 3 T11: -0.0239 T22: -0.0394 REMARK 3 T33: -0.0248 T12: -0.0001 REMARK 3 T13: -0.0060 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.5932 L22: 0.7371 REMARK 3 L33: 0.8742 L12: -0.4989 REMARK 3 L13: -0.2882 L23: 0.0986 REMARK 3 S TENSOR REMARK 3 S11: -0.0165 S12: -0.0229 S13: -0.0391 REMARK 3 S21: 0.0391 S22: 0.0380 S23: -0.0207 REMARK 3 S31: -0.0310 S32: -0.0163 S33: -0.0215 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 159 REMARK 3 ORIGIN FOR THE GROUP (A): -28.7673 -10.6977 -27.0182 REMARK 3 T TENSOR REMARK 3 T11: -0.0180 T22: -0.0270 REMARK 3 T33: -0.0097 T12: 0.0157 REMARK 3 T13: -0.0099 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.3871 L22: 0.7270 REMARK 3 L33: 0.6437 L12: -0.2385 REMARK 3 L13: -0.1682 L23: 0.0433 REMARK 3 S TENSOR REMARK 3 S11: 0.0021 S12: -0.0125 S13: 0.0376 REMARK 3 S21: -0.0843 S22: -0.0085 S23: 0.0644 REMARK 3 S31: -0.0054 S32: -0.0170 S33: 0.0064 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS
REMARK 4 REMARK 4 3NAD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-10. REMARK 100 THE RCSB ID CODE IS RCSB059580.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : KOHZU HLD-4 DOUBLE CRYSTAL REMARK 200 DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX 225 HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52226 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.60300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2P8G REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NA/K TARTARATE, 0.1 M TRI-SODIUM REMARK 280 CITRATE, 0.5 M AMMONIUM SULFATE, PH 5.6, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 46.05350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.98200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.05350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.98200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG B 160 REMARK 465 LYS B 161
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 161 CG CD CE NZ
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 359 O HOH B 540 2.17 REMARK 500 O HOH B 412 O HOH B 543 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 27 18.27 -143.94 REMARK 500 ASP B 26 3.61 -69.77 REMARK 500 HIS B 27 18.20 -147.95 REMARK 500 ALA B 145 14.47 -140.43 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 319 DISTANCE = 5.14 ANGSTROMS REMARK 525 HOH A 385 DISTANCE = 5.94 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 162
DBREF 3NAD A 1 161 UNP Q45361 Q45361_BACPU 1 161 DBREF 3NAD B 1 161 UNP Q45361 Q45361_BACPU 1 161
SEQRES 1 A 161 MET ASP GLN PHE VAL GLY LEU HIS MET ILE TYR THR TYR SEQRES 2 A 161 GLU ASN GLY TRP GLU TYR GLU ILE TYR ILE LYS ASN ASP SEQRES 3 A 161 HIS THR ILE ASP TYR ARG ILE HIS SER GLY MET VAL GLY SEQRES 4 A 161 GLY ARG TRP VAL ARG ASP GLN GLU VAL ASN ILE VAL LYS SEQRES 5 A 161 LEU THR LYS GLY VAL TYR LYS VAL SER TRP THR GLU PRO SEQRES 6 A 161 THR GLY THR ASP VAL SER LEU ASN PHE MET PRO GLU GLU SEQRES 7 A 161 LYS ARG MET HIS GLY VAL ILE PHE PHE PRO LYS TRP VAL SEQRES 8 A 161 HIS GLU ARG PRO ASP ILE THR VAL CYS TYR GLN ASN ASP SEQRES 9 A 161 TYR ILE ASP LEU MET LYS GLU SER ARG GLU LYS TYR GLU SEQRES 10 A 161 THR TYR PRO LYS TYR VAL VAL PRO GLU PHE ALA ASP ILE SEQRES 11 A 161 THR TYR ILE HIS HIS ALA GLY VAL ASN ASP GLU THR ILE SEQRES 12 A 161 ILE ALA GLU ALA PRO TYR GLU GLY MET THR ASP GLU ILE SEQRES 13 A 161 ARG ALA GLY ARG LYS SEQRES 1 B 161 MET ASP GLN PHE VAL GLY LEU HIS MET ILE TYR THR TYR SEQRES 2 B 161 GLU ASN GLY TRP GLU TYR GLU ILE TYR ILE LYS ASN ASP SEQRES 3 B 161 HIS THR ILE ASP TYR ARG ILE HIS SER GLY MET VAL GLY SEQRES 4 B 161 GLY ARG TRP VAL ARG ASP GLN GLU VAL ASN ILE VAL LYS SEQRES 5 B 161 LEU THR LYS GLY VAL TYR LYS VAL SER TRP THR GLU PRO SEQRES 6 B 161 THR GLY THR ASP VAL SER LEU ASN PHE MET PRO GLU GLU SEQRES 7 B 161 LYS ARG MET HIS GLY VAL ILE PHE PHE PRO LYS TRP VAL SEQRES 8 B 161 HIS GLU ARG PRO ASP ILE THR VAL CYS TYR GLN ASN ASP SEQRES 9 B 161 TYR ILE ASP LEU MET LYS GLU SER ARG GLU LYS TYR GLU SEQRES 10 B 161 THR TYR PRO LYS TYR VAL VAL PRO GLU PHE ALA ASP ILE SEQRES 11 B 161 THR TYR ILE HIS HIS ALA GLY VAL ASN ASP GLU THR ILE SEQRES 12 B 161 ILE ALA GLU ALA PRO TYR GLU GLY MET THR ASP GLU ILE SEQRES 13 B 161 ARG ALA GLY ARG LYS
HET SO4 A 162 5
HETNAM SO4 SULFATE ION
FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *368(H2 O)
HELIX 1 1 PRO A 76 GLU A 78 5 3 HELIX 2 2 PRO A 88 ARG A 94 1 7 HELIX 3 3 PRO A 95 VAL A 99 5 5 HELIX 4 4 TYR A 101 ASP A 104 5 4 HELIX 5 5 TYR A 105 TYR A 116 1 12 HELIX 6 6 GLY A 151 ARG A 160 1 10 HELIX 7 7 PRO B 76 GLU B 78 5 3 HELIX 8 8 PRO B 88 ARG B 94 1 7 HELIX 9 9 PRO B 95 VAL B 99 5 5 HELIX 10 10 TYR B 101 ASP B 104 5 4 HELIX 11 11 TYR B 105 TYR B 116 1 12 HELIX 12 12 GLY B 151 GLY B 159 1 9
SHEET 1 A 9 TRP A 42 GLU A 47 0 SHEET 2 A 9 THR A 28 ILE A 33 -1 N TYR A 31 O VAL A 43 SHEET 3 A 9 GLU A 18 ASN A 25 -1 N TYR A 22 O ASP A 30 SHEET 4 A 9 LEU A 7 THR A 12 -1 N TYR A 11 O TYR A 19 SHEET 5 A 9 TYR A 122 HIS A 135 -1 O HIS A 134 N HIS A 8 SHEET 6 A 9 ARG A 80 PHE A 87 -1 N ILE A 85 O VAL A 124 SHEET 7 A 9 ASP A 69 MET A 75 -1 N ASN A 73 O HIS A 82 SHEET 8 A 9 VAL A 57 THR A 63 -1 N VAL A 60 O LEU A 72 SHEET 9 A 9 ASN A 49 THR A 54 -1 N ASN A 49 O SER A 61 SHEET 1 B 9 TRP B 42 GLU B 47 0 SHEET 2 B 9 THR B 28 ILE B 33 -1 N TYR B 31 O VAL B 43 SHEET 3 B 9 GLU B 18 ASN B 25 -1 N TYR B 22 O ASP B 30 SHEET 4 B 9 LEU B 7 TYR B 13 -1 N LEU B 7 O ILE B 23 SHEET 5 B 9 TYR B 122 HIS B 135 -1 O HIS B 134 N HIS B 8 SHEET 6 B 9 ARG B 80 PHE B 87 -1 N GLY B 83 O GLU B 126 SHEET 7 B 9 ASP B 69 MET B 75 -1 N ASP B 69 O PHE B 86 SHEET 8 B 9 VAL B 57 THR B 63 -1 N VAL B 60 O LEU B 72 SHEET 9 B 9 ASN B 49 THR B 54 -1 N ASN B 49 O SER B 61
CISPEP 1 TYR A 119 PRO A 120 0 -1.79 CISPEP 2 TYR B 119 PRO B 120 0 -0.26
SITE 1 AC1 5 TYR A 31 ILE A 33 ARG A 41 GLU A 64 SITE 2 AC1 5 HOH A 193
CRYST1 92.107 109.964 45.428 90.00 90.00 90.00 P 21 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010857 0.000000 0.000000 0.00000
SCALE2 0.000000 0.009094 0.000000 0.00000
SCALE3 0.000000 0.000000 0.022013 0.00000