10 20 30 40 50 60 70 80 3LQY - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 10-FEB-10 3LQY
TITLE CRYSTAL STRUCTURE OF PUTATIVE ISOCHORISMATASE HYDROLASE FROM OLEISPIRA TITLE 2 ANTARCTICA
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ISOCHORISMATASE HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OLEISPIRA ANTARCTICA; SOURCE 3 ORGANISM_TAXID: 188908; SOURCE 4 GENE: OLEI00908_1_189; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIPL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P15TV LIC
KEYWDS STRUCTURAL GENOMICS, ISOCHORISMATASE, HYDROLASE, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG
EXPDTA X-RAY DIFFRACTION
AUTHOR A.GORAL,M.CHRUSZCZ,O.KAGAN,M.CYMBOROWSKI,A.SAVCHENKO,A.JOACHIMIAK, AUTHOR 2 W.MINOR,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG)
REVDAT 3 25-DEC-13 3LQY 1 REMARK REVDAT 2 09-JAN-13 3LQY 1 JRNL VERSN REVDAT 1 16-MAR-10 3LQY 0
JRNL AUTH A.M.GORAL,K.L.TKACZUK,M.CHRUSZCZ,O.KAGAN,A.SAVCHENKO,W.MINOR JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE ISOCHORISMATASE HYDROLASE JRNL TITL 2 FROM OLEISPIRA ANTARCTICA. JRNL REF J.STRUCT.FUNCT.GENOM. V. 13 27 2012 JRNL REFN ISSN 1345-711X JRNL PMID 22350524 JRNL DOI 10.1007/S10969-012-9127-5
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.KUBE,T.N.CHERNIKOVA,Y.AL-RAMAHI,A.BELOQUI,N.LOPEZ-CORTEZ, REMARK 1 AUTH 2 M.E.GUAZZARONI,H.J.HEIPIEPER,S.KLAGES,O.R.KOTSYURBENKO, REMARK 1 AUTH 3 I.LANGER,T.Y.NECHITAYLO,H.LUNSDORF,M.FERNANDEZ,S.JUAREZ, REMARK 1 AUTH 4 S.CIORDIA,A.SINGER,O.KAGAN,O.EGOROVA,P.A.PETIT,P.STOGIOS, REMARK 1 AUTH 5 Y.KIM,A.TCHIGVINTSEV,R.FLICK,R.DENARO,M.GENOVESE,J.P.ALBAR, REMARK 1 AUTH 6 O.N.REVA,M.MARTINEZ-GOMARIZ,H.TRAN,M.FERRER,A.SAVCHENKO, REMARK 1 AUTH 7 A.F.YAKUNIN,M.M.YAKIMOV,O.V.GOLYSHINA,R.REINHARDT, REMARK 1 AUTH 8 P.N.GOLYSHIN REMARK 1 TITL GENOME SEQUENCE AND FUNCTIONAL GENOMIC ANALYSIS OF THE REMARK 1 TITL 2 OIL-DEGRADING BACTERIUM OLEISPIRA ANTARCTICA. REMARK 1 REF NAT COMMUN V. 4 2156 2013 REMARK 1 REFN ESSN 2041-1723 REMARK 1 PMID 23877221 REMARK 1 DOI 10.1038/NCOMMS3156
REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 17118 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 921 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1147 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.3540 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.3790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1396 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 126 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.13000 REMARK 3 B22 (A**2) : 0.13000 REMARK 3 B33 (A**2) : -0.19000 REMARK 3 B12 (A**2) : 0.06000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.142 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.130 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.156 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.749 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1434 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 903 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1948 ; 1.550 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2220 ; 4.395 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 186 ; 5.955 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 63 ;30.094 ;25.397 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 219 ;13.676 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;22.808 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 229 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1625 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 275 ; 0.011 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 932 ; 0.995 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 381 ; 0.000 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1483 ; 1.598 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 502 ; 2.910 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 465 ; 3.658 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 5 REMARK 3 ORIGIN FOR THE GROUP (A): -6.1410 11.6620 17.9540 REMARK 3 T TENSOR REMARK 3 T11: 1.0112 T22: 0.7319 REMARK 3 T33: 0.3947 T12: -0.0944 REMARK 3 T13: -0.0328 T23: 0.0553 REMARK 3 L TENSOR REMARK 3 L11: -0.4561 L22: 3.3959 REMARK 3 L33: 2.7012 L12: 4.2020 REMARK 3 L13: -0.3438 L23: -2.0776 REMARK 3 S TENSOR REMARK 3 S11: -0.2121 S12: 0.2877 S13: 0.4112 REMARK 3 S21: -0.2125 S22: 0.3448 S23: 0.2742 REMARK 3 S31: -0.2338 S32: -0.1763 S33: -0.1327 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 35 REMARK 3 ORIGIN FOR THE GROUP (A): 16.1150 35.0130 9.3780 REMARK 3 T TENSOR REMARK 3 T11: 0.6095 T22: 0.5462 REMARK 3 T33: 0.1416 T12: -0.0964 REMARK 3 T13: -0.0328 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.5837 L22: 2.0736 REMARK 3 L33: 12.1747 L12: -0.1483 REMARK 3 L13: -2.2230 L23: -2.4385 REMARK 3 S TENSOR REMARK 3 S11: 0.0628 S12: -0.0144 S13: 0.0294 REMARK 3 S21: -0.6067 S22: 0.2238 S23: 0.1339 REMARK 3 S31: 0.6521 S32: -0.0094 S33: -0.2866 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 36 A 68 REMARK 3 ORIGIN FOR THE GROUP (A): 9.0470 30.9610 9.4060 REMARK 3 T TENSOR REMARK 3 T11: 0.6831 T22: 0.6557 REMARK 3 T33: 0.1701 T12: -0.1937 REMARK 3 T13: -0.0911 T23: 0.0498 REMARK 3 L TENSOR REMARK 3 L11: 2.9617 L22: 5.0007 REMARK 3 L33: 10.6079 L12: 0.2688 REMARK 3 L13: -1.2535 L23: -0.8508 REMARK 3 S TENSOR REMARK 3 S11: -0.0610 S12: 0.2992 S13: -0.0155 REMARK 3 S21: -0.8711 S22: 0.4478 S23: 0.3385 REMARK 3 S31: 1.1523 S32: -1.1661 S33: -0.3868 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 69 A 116 REMARK 3 ORIGIN FOR THE GROUP (A): 2.7480 32.9270 12.0620 REMARK 3 T TENSOR REMARK 3 T11: 0.7106 T22: 1.0135 REMARK 3 T33: 0.3629 T12: -0.2544 REMARK 3 T13: -0.1891 T23: 0.1818 REMARK 3 L TENSOR REMARK 3 L11: 2.0284 L22: 4.1907 REMARK 3 L33: 8.7945 L12: 0.4604 REMARK 3 L13: -2.0423 L23: -2.4197 REMARK 3 S TENSOR REMARK 3 S11: -0.1720 S12: 0.6653 S13: 0.1659 REMARK 3 S21: -0.7635 S22: 0.7966 S23: 0.7006 REMARK 3 S31: 0.9090 S32: -2.1626 S33: -0.6246 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 117 A 135 REMARK 3 ORIGIN FOR THE GROUP (A): 9.8140 32.7050 23.0230 REMARK 3 T TENSOR REMARK 3 T11: 0.4240 T22: 0.5302 REMARK 3 T33: 0.1620 T12: -0.0729 REMARK 3 T13: -0.0457 T23: 0.0877 REMARK 3 L TENSOR REMARK 3 L11: 0.2875 L22: 0.1548 REMARK 3 L33: 12.0781 L12: 0.6870 REMARK 3 L13: -1.1958 L23: -0.4630 REMARK 3 S TENSOR REMARK 3 S11: 0.0326 S12: 0.2095 S13: -0.0794 REMARK 3 S21: -0.0069 S22: 0.2301 S23: 0.0552 REMARK 3 S31: 0.6069 S32: -0.5667 S33: -0.2627 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 136 A 162 REMARK 3 ORIGIN FOR THE GROUP (A): 18.0910 34.4100 23.4910 REMARK 3 T TENSOR REMARK 3 T11: 0.5016 T22: 0.5228 REMARK 3 T33: 0.1562 T12: -0.0163 REMARK 3 T13: 0.0066 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 1.5161 L22: 2.4550 REMARK 3 L33: 7.3953 L12: -0.0001 REMARK 3 L13: 0.9466 L23: -0.4036 REMARK 3 S TENSOR REMARK 3 S11: -0.1327 S12: -0.0200 S13: -0.0156 REMARK 3 S21: -0.2301 S22: 0.1464 S23: -0.1229 REMARK 3 S31: 0.3207 S32: 0.6320 S33: -0.0136 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 163 A 181 REMARK 3 ORIGIN FOR THE GROUP (A): 16.6290 27.3110 27.1330 REMARK 3 T TENSOR REMARK 3 T11: 0.6502 T22: 0.5117 REMARK 3 T33: 0.1473 T12: 0.0563 REMARK 3 T13: -0.0224 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 2.3554 L22: 4.2276 REMARK 3 L33: 8.4102 L12: 0.8476 REMARK 3 L13: -1.2011 L23: -0.5039 REMARK 3 S TENSOR REMARK 3 S11: -0.0491 S12: -0.0837 S13: -0.1473 REMARK 3 S21: -0.1439 S22: 0.1224 S23: -0.0194 REMARK 3 S31: 1.2089 S32: 0.6091 S33: -0.0733 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 182 A 186 REMARK 3 ORIGIN FOR THE GROUP (A): 16.3120 15.3670 15.8570 REMARK 3 T TENSOR REMARK 3 T11: 1.0475 T22: 0.5681 REMARK 3 T33: 0.1690 T12: 0.1010 REMARK 3 T13: 0.0742 T23: -0.0798 REMARK 3 L TENSOR REMARK 3 L11: 2.2715 L22: 13.4531 REMARK 3 L33: 7.3293 L12: -6.4120 REMARK 3 L13: 2.7845 L23: -7.9966 REMARK 3 S TENSOR REMARK 3 S11: -0.6208 S12: 0.2759 S13: -0.4661 REMARK 3 S21: 0.8396 S22: 0.4085 S23: -0.2175 REMARK 3 S31: -0.0973 S32: -0.0024 S33: 0.2123 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS
REMARK 4 REMARK 4 3LQY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-FEB-10. REMARK 100 THE RCSB ID CODE IS RCSB057619.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : SI-111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18174 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : 0.09000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 48.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.54000 REMARK 200 R SYM FOR SHELL (I) : 0.54000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXD, SHELXE, MLPHARE, DM, SOLVE, REMARK 200 RESOLVE, CCP4, ARP/WARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350 25%, NACL 0.2M, NA CITRATE REMARK 280 0.1M PH 5.6, VAPOR DIFFUSION, TEMPERATURE 295K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 114.13200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.06600 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 57.06600 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 114.13200 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 72.03599 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 57.06600
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1017 LIES ON A SPECIAL POSITION.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 61 REMARK 465 GLY A 111 REMARK 465 LEU A 189
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 63 CG OD1 OD2 REMARK 470 LYS A 105 CG CD CE NZ
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 27 55.41 -156.50 REMARK 500 MSE A 124 -82.17 -116.32 REMARK 500 THR A 149 -158.73 -144.48 REMARK 500 PHE A 174 -40.33 63.03 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1134 DISTANCE = 5.06 ANGSTROMS REMARK 525 HOH A1137 DISTANCE = 7.59 ANGSTROMS REMARK 525 HOH A1142 DISTANCE = 5.22 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 190
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC40079 RELATED DB: TARGETDB
DBREF 3LQY A 0 189 PDB 3LQY 3LQY 1 190
SEQRES 1 A 190 GLY MSE THR THR GLU ASN THR THR ALA LEU LEU LEU ILE SEQRES 2 A 190 ASP PHE GLN ASN ASP TYR PHE SER THR TYR ASN GLY ALA SEQRES 3 A 190 LYS ASN PRO LEU VAL GLY THR GLU ALA ALA ALA GLU GLN SEQRES 4 A 190 GLY ALA LYS LEU LEU ALA LYS PHE ARG GLN GLN GLY LEU SEQRES 5 A 190 PRO VAL VAL HIS VAL ARG HIS GLU PHE PRO THR ASP GLU SEQRES 6 A 190 ALA PRO PHE PHE LEU PRO GLY SER ASP GLY ALA LYS ILE SEQRES 7 A 190 HIS PRO SER VAL ALA ALA GLN GLU GLY GLU ALA VAL VAL SEQRES 8 A 190 LEU LYS HIS GLN ILE ASN SER PHE ARG ASP THR ASP LEU SEQRES 9 A 190 LYS LYS VAL LEU ASP ASP ALA GLY ILE LYS LYS LEU VAL SEQRES 10 A 190 ILE VAL GLY ALA MSE THR HIS MSE CSD ILE ASP ALA VAL SEQRES 11 A 190 THR ARG ALA ALA GLU ASP LEU GLY TYR GLU CYS ALA VAL SEQRES 12 A 190 ALA HIS ASP ALA CYS ALA THR LEU ASP LEU GLU PHE ASN SEQRES 13 A 190 GLY ILE THR VAL PRO ALA ALA GLN VAL HIS ALA ALA PHE SEQRES 14 A 190 MSE SER ALA LEU SER PHE ALA TYR ALA ASN VAL ALA SER SEQRES 15 A 190 ALA ASP GLU LEU ILE ALA GLY LEU
MODRES 3LQY MSE A 1 MET SELENOMETHIONINE MODRES 3LQY MSE A 121 MET SELENOMETHIONINE MODRES 3LQY MSE A 124 MET SELENOMETHIONINE MODRES 3LQY CSD A 125 CYS 3-SULFINOALANINE MODRES 3LQY MSE A 169 MET SELENOMETHIONINE
HET MSE A 1 8 HET MSE A 121 8 HET MSE A 124 8 HET CSD A 125 8 HET MSE A 169 8 HET GOL A 190 6
HETNAM MSE SELENOMETHIONINE HETNAM CSD 3-SULFINOALANINE HETNAM GOL GLYCEROL
HETSYN CSD S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 1 CSD C3 H7 N O4 S FORMUL 2 GOL C3 H8 O3 FORMUL 3 HOH *126(H2 O)
HELIX 1 1 GLN A 15 PHE A 19 5 5 HELIX 2 2 GLY A 31 GLN A 49 1 19 HELIX 3 3 SER A 72 LYS A 76 5 5 HELIX 4 4 HIS A 78 ALA A 82 5 5 HELIX 5 5 ASP A 102 ALA A 110 1 9 HELIX 6 6 MSE A 124 GLY A 137 1 14 HELIX 7 7 PRO A 160 SER A 173 1 14 HELIX 8 8 SER A 181 ALA A 187 1 7
SHEET 1 A 6 VAL A 89 LYS A 92 0 SHEET 2 A 6 VAL A 53 HIS A 58 1 N HIS A 55 O VAL A 90 SHEET 3 A 6 THR A 7 ILE A 12 1 N LEU A 9 O VAL A 54 SHEET 4 A 6 LYS A 114 ALA A 120 1 O VAL A 116 N LEU A 10 SHEET 5 A 6 GLU A 139 ALA A 148 1 O ALA A 146 N GLY A 119 SHEET 6 A 6 ASN A 178 ALA A 180 1 O ASN A 178 N CYS A 140 SHEET 1 B 2 LEU A 152 PHE A 154 0 SHEET 2 B 2 ILE A 157 VAL A 159 -1 O VAL A 159 N LEU A 152
LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N THR A 2 1555 1555 1.33 LINK C ALA A 120 N MSE A 121 1555 1555 1.35 LINK C MSE A 121 N THR A 122 1555 1555 1.33 LINK C HIS A 123 N MSE A 124 1555 1555 1.32 LINK C MSE A 124 N CSD A 125 1555 1555 1.34 LINK C CSD A 125 N ILE A 126 1555 1555 1.32 LINK C PHE A 168 N MSE A 169 1555 1555 1.33 LINK C MSE A 169 N SER A 170 1555 1555 1.32
CISPEP 1 ALA A 120 MSE A 121 0 -2.73
SITE 1 AC1 9 VAL A 30 ALA A 148 THR A 149 ALA A 161 SITE 2 AC1 9 ALA A 162 HIS A 165 HOH A1107 HOH A1155 SITE 3 AC1 9 HOH A1206
CRYST1 41.590 41.590 171.198 90.00 90.00 120.00 P 32 2 1 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.024044 0.013882 0.000000 0.00000
SCALE2 0.000000 0.027764 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005841 0.00000