10 20 30 40 50 60 70 80 3KWU - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER METAL BINDING PROTEIN 01-DEC-09 3KWU
TITLE MUNC13-1 C2B-DOMAIN, CALCIUM BOUND
COMPND MOL_ID: 1; COMPND 2 MOLECULE: MUNC13-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C2B DOMAIN, RESIDUES 675-820; COMPND 5 SYNONYM: PROTEIN UNC-13 HOMOLOG A; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: UNC-13, UNC13A, UNC13H1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-KT
KEYWDS CALCIUM BINDING PROTEIN, PHOSPHOLIPID BINDING PROTEIN, METAL KEYWDS 2 BINDING PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR D.R.TOMCHICK,J.RIZO,M.MACHIUS,J.LU
REVDAT 2 07-APR-10 3KWU 1 JRNL REVDAT 1 16-FEB-10 3KWU 0
JRNL AUTH O.H.SHIN,J.LU,J.S.RHEE,D.R.TOMCHICK,Z.P.PANG, JRNL AUTH 2 S.M.WOJCIK,M.CAMACHO-PEREZ,N.BROSE,M.MACHIUS, JRNL AUTH 3 J.RIZO,C.ROSENMUND,T.C.SUDHOF JRNL TITL MUNC13 C2B DOMAIN IS AN ACTIVITY-DEPENDENT CA2+ JRNL TITL 2 REGULATOR OF SYNAPTIC EXOCYTOSIS. JRNL REF NAT.STRUCT.MOL.BIOL. V. 17 280 2010 JRNL REFN ISSN 1545-9993 JRNL PMID 20154707 JRNL DOI 10.1038/NSMB.1758
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.J.JUNGE,J.S.RHEE,O.JAHN,F.VAROQUEAUX,J.SPEISS, REMARK 1 AUTH 2 M.N.WAXHAM,C.ROSENMUND,N.BROSE REMARK 1 TITL CALMODULIN AND MUNC13 FORM A CA2+ SENSOR/EFFECTOR REMARK 1 TITL 2 COMPLEX THAT CONTROLS SHORT-TERM SYNAPTIC REMARK 1 TITL 3 PLASTICITY. REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 118 389 2004 REMARK 1 REFN ISSN 0092-8674 REMARK 1 REFERENCE 2 REMARK 1 AUTH I.AUGUSTIN,C.ROSENMUND,T.C.SUDHOF,N.BROSE REMARK 1 TITL MUNC-13 IS ESSENTIAL FOR FUSION COMPETENCE OF REMARK 1 TITL 2 GLUTAMATERGIC SYNAPTIC VESICLES. REMARK 1 REF NATURE V. 400 457 1999 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 3 REMARK 1 AUTH N.BROSE,K.HOFMANN,Y.HATA,T.C.SUDHOF REMARK 1 TITL MAMMALIAN HOMOLOGUES OF C. ELEGANS UNC-13 GENE REMARK 1 TITL 2 DEFINE NOVEL FAMILY OF C2-DOMAIN PROTEINS. REMARK 1 REF J.BIOL.CHEM. V. 270 25273 1995 REMARK 1 REFN ISSN 0021-9258
REMARK 2 REMARK 2 RESOLUTION. 1.37 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 31808 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1546 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.37 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.40 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2108 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.2310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1169 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 161 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21000 REMARK 3 B22 (A**2) : -0.21000 REMARK 3 B33 (A**2) : 0.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.055 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.057 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.032 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.401 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1213 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1642 ; 1.813 ; 1.932 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 151 ; 7.615 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 61 ;35.080 ;23.607 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 228 ;12.812 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;13.593 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 176 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 925 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 484 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 800 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 123 ; 0.165 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 11 ; 0.075 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 37 ; 0.169 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.116 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 744 ; 1.388 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1186 ; 1.966 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 536 ; 2.752 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 456 ; 4.163 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 689 A 759 REMARK 3 ORIGIN FOR THE GROUP (A): 6.4346 18.8079 27.3055 REMARK 3 T TENSOR REMARK 3 T11: -0.0045 T22: -0.0156 REMARK 3 T33: -0.0266 T12: 0.0105 REMARK 3 T13: -0.0121 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 1.1561 L22: 1.8993 REMARK 3 L33: 0.6905 L12: -0.1915 REMARK 3 L13: 0.0371 L23: 0.3631 REMARK 3 S TENSOR REMARK 3 S11: 0.0560 S12: 0.1649 S13: -0.0679 REMARK 3 S21: -0.1817 S22: -0.0555 S23: 0.1106 REMARK 3 S31: -0.0056 S32: -0.0034 S33: -0.0005 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 760 A 775 REMARK 3 ORIGIN FOR THE GROUP (A): 5.3936 39.1136 27.8143 REMARK 3 T TENSOR REMARK 3 T11: 0.0154 T22: -0.0186 REMARK 3 T33: -0.0337 T12: 0.0089 REMARK 3 T13: -0.0348 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 1.3227 L22: 4.5466 REMARK 3 L33: 2.6663 L12: -1.2611 REMARK 3 L13: -1.3930 L23: -0.4165 REMARK 3 S TENSOR REMARK 3 S11: -0.0176 S12: -0.0338 S13: -0.0089 REMARK 3 S21: -0.0652 S22: 0.1060 S23: 0.1615 REMARK 3 S31: -0.1440 S32: -0.0125 S33: -0.0884 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 776 A 796 REMARK 3 ORIGIN FOR THE GROUP (A): 14.9483 12.7093 25.3045 REMARK 3 T TENSOR REMARK 3 T11: 0.0027 T22: -0.0206 REMARK 3 T33: -0.0267 T12: 0.0114 REMARK 3 T13: -0.0032 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 0.6712 L22: 2.7022 REMARK 3 L33: 0.5904 L12: -0.3869 REMARK 3 L13: -0.2135 L23: 0.0992 REMARK 3 S TENSOR REMARK 3 S11: 0.0598 S12: 0.1177 S13: -0.0493 REMARK 3 S21: -0.2428 S22: -0.0469 S23: -0.0151 REMARK 3 S31: 0.0259 S32: 0.0150 S33: -0.0129 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 797 A 811 REMARK 3 ORIGIN FOR THE GROUP (A): 19.3061 24.4811 29.3569 REMARK 3 T TENSOR REMARK 3 T11: -0.0037 T22: -0.0259 REMARK 3 T33: 0.0413 T12: -0.0122 REMARK 3 T13: 0.0405 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 2.7749 L22: 4.7396 REMARK 3 L33: 2.3519 L12: -0.4342 REMARK 3 L13: -0.9702 L23: -0.0941 REMARK 3 S TENSOR REMARK 3 S11: 0.1076 S12: 0.1468 S13: 0.2735 REMARK 3 S21: -0.2901 S22: 0.0061 S23: -0.5288 REMARK 3 S31: -0.1437 S32: 0.1860 S33: -0.1137 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 812 A 819 REMARK 3 ORIGIN FOR THE GROUP (A): 8.8260 4.6335 24.5568 REMARK 3 T TENSOR REMARK 3 T11: 0.0041 T22: -0.0186 REMARK 3 T33: 0.0394 T12: 0.0229 REMARK 3 T13: -0.0282 T23: -0.0540 REMARK 3 L TENSOR REMARK 3 L11: 1.2994 L22: 4.7966 REMARK 3 L33: 8.3758 L12: -0.1966 REMARK 3 L13: -1.1334 L23: 4.0578 REMARK 3 S TENSOR REMARK 3 S11: 0.0792 S12: 0.2377 S13: -0.3250 REMARK 3 S21: -0.0878 S22: -0.2948 S23: 0.2052 REMARK 3 S31: 0.3620 S32: -0.3482 S33: 0.2156 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS
REMARK 4 REMARK 4 3KWU COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-DEC-09. REMARK 100 THE RCSB ID CODE IS RCSB056546.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97895 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31808 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.370 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 12.600 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 40.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.46400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3KWT REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG-MME 2000, 0.1 M BIS-TRIS REMARK 280 PROPANE PH 6.8, 0.1 M NACL, 0.1 MM CACL2, 0.5 MM TCEP, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.99150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.47150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.47150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.48725 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.47150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.47150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 22.49575 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.47150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.47150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 67.48725 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.47150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.47150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 22.49575 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 44.99150 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 111 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 157 LIES ON A SPECIAL POSITION.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 675 REMARK 465 VAL A 676 REMARK 465 LYS A 677 REMARK 465 GLN A 678 REMARK 465 SER A 679 REMARK 465 VAL A 680 REMARK 465 LEU A 681 REMARK 465 ASP A 682 REMARK 465 GLY A 683 REMARK 465 THR A 684 REMARK 465 SER A 685 REMARK 465 LYS A 686 REMARK 465 LYS A 820
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 724 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 LEU A 756 CB - CG - CD1 ANGL. DEV. = 15.4 DEGREES REMARK 500 LEU A 756 CB - CG - CD2 ANGL. DEV. = 15.4 DEGREES REMARK 500 GLU A 773 N - CA - CB ANGL. DEV. = 12.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 902 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 757 OD2 REMARK 620 2 ASP A 776 OD2 94.9 REMARK 620 3 ASP A 705 OD1 81.4 165.7 REMARK 620 4 HOH A 5 O 166.7 96.4 86.0 REMARK 620 5 LYS A 704 O 89.8 83.9 82.3 84.4 REMARK 620 6 ASP A 759 OD2 104.4 75.2 119.1 85.3 155.5 REMARK 620 7 ASP A 759 OD1 81.7 122.7 70.6 98.0 152.6 51.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 901 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 759 OD1 REMARK 620 2 HOH A 4 O 84.8 REMARK 620 3 ASP A 757 OD1 92.7 176.3 REMARK 620 4 GLU A 758 O 79.3 93.4 88.8 REMARK 620 5 ASP A 711 OD2 157.7 84.5 98.8 81.9 REMARK 620 6 ASP A 705 OD2 121.5 88.7 90.3 159.3 77.8 REMARK 620 7 ASP A 705 OD1 69.6 84.3 92.3 148.8 128.5 51.9 REMARK 620 N 1 2 3 4 5 6
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 911 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 912 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 921
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KWT RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITHOUT CALCIUM
DBREF 3KWU A 675 820 UNP Q62768 UN13A_RAT 675 820
SEQADV 3KWU GLU A 673 UNP Q62768 EXPRESSION TAG SEQADV 3KWU PHE A 674 UNP Q62768 EXPRESSION TAG
SEQRES 1 A 148 GLU PHE ALA VAL LYS GLN SER VAL LEU ASP GLY THR SER SEQRES 2 A 148 LYS TRP SER ALA LYS ILE SER ILE THR VAL VAL CYS ALA SEQRES 3 A 148 GLN GLY LEU GLN ALA LYS ASP LYS THR GLY SER SER ASP SEQRES 4 A 148 PRO TYR VAL THR VAL GLN VAL GLY LYS THR LYS LYS ARG SEQRES 5 A 148 THR LYS THR ILE TYR GLY ASN LEU ASN PRO VAL TRP GLU SEQRES 6 A 148 GLU ASN PHE HIS PHE GLU CYS HIS ASN SER SER ASP ARG SEQRES 7 A 148 ILE LYS VAL ARG VAL LEU ASP GLU ASP ASP ASP ILE LYS SEQRES 8 A 148 SER ARG VAL LYS GLN ARG PHE LYS ARG GLU SER ASP ASP SEQRES 9 A 148 PHE LEU GLY GLN THR ILE ILE GLU VAL ARG THR LEU SER SEQRES 10 A 148 GLY GLU MET ASP VAL TRP TYR ASN LEU ASP LYS ARG THR SEQRES 11 A 148 ASP LYS SER ALA VAL SER GLY ALA ILE ARG LEU HIS ILE SEQRES 12 A 148 SER VAL GLU ILE LYS
HET CA A 901 1 HET CA A 902 1 HET CL A 911 1 HET CL A 912 1 HET GOL A 921 12
HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL
FORMUL 2 CA 2(CA 2+) FORMUL 4 CL 2(CL 1-) FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *157(H2 O)
HELIX 1 1 ASP A 761 GLN A 768 1 8 HELIX 2 2 ARG A 786 LEU A 788 5 3
SHEET 1 A 4 VAL A 735 CYS A 744 0 SHEET 2 A 4 ALA A 689 GLN A 699 -1 N ALA A 689 O CYS A 744 SHEET 3 A 4 ALA A 810 GLU A 818 -1 O GLU A 818 N LYS A 690 SHEET 4 A 4 GLU A 791 ASN A 797 -1 N TYR A 796 O ILE A 811 SHEET 1 B 4 THR A 721 ARG A 724 0 SHEET 2 B 4 PRO A 712 VAL A 718 -1 N VAL A 716 O LYS A 723 SHEET 3 B 4 ARG A 750 ASP A 757 -1 O LEU A 756 N TYR A 713 SHEET 4 B 4 ASP A 776 GLU A 784 -1 O LEU A 778 N VAL A 755
LINK OD2 ASP A 757 CA CA A 902 1555 1555 2.28 LINK OD2 ASP A 776 CA CA A 902 1555 1555 2.32 LINK OD1 ASP A 759 CA CA A 901 1555 1555 2.33 LINK CA CA A 901 O HOH A 4 1555 1555 2.33 LINK OD1 ASP A 757 CA CA A 901 1555 1555 2.35 LINK O GLU A 758 CA CA A 901 1555 1555 2.37 LINK OD2 ASP A 711 CA CA A 901 1555 1555 2.38 LINK OD1 ASP A 705 CA CA A 902 1555 1555 2.38 LINK OD2 ASP A 705 CA CA A 901 1555 1555 2.39 LINK CA CA A 902 O HOH A 5 1555 1555 2.39 LINK O LYS A 704 CA CA A 902 1555 1555 2.39 LINK OD2 ASP A 759 CA CA A 902 1555 1555 2.43 LINK OD1 ASP A 759 CA CA A 902 1555 1555 2.52 LINK OD1 ASP A 705 CA CA A 901 1555 1555 2.63
SITE 1 AC1 6 HOH A 4 ASP A 705 ASP A 711 ASP A 757 SITE 2 AC1 6 GLU A 758 ASP A 759 SITE 1 AC2 6 HOH A 5 LYS A 704 ASP A 705 ASP A 757 SITE 2 AC2 6 ASP A 759 ASP A 776 SITE 1 AC3 4 HOH A 47 LYS A 704 SER A 805 ALA A 806 SITE 1 AC4 3 LYS A 723 PHE A 740 HIS A 741 SITE 1 AC5 11 HOH A 6 HOH A 32 HOH A 98 HOH A 139 SITE 2 AC5 11 GLU A 673 TYR A 713 LYS A 722 LEU A 756 SITE 3 AC5 11 GLU A 773 SER A 774 ASP A 775
CRYST1 56.943 56.943 89.983 90.00 90.00 90.00 P 43 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.017561 0.000000 0.000000 0.00000
SCALE2 0.000000 0.017561 0.000000 0.00000
SCALE3 0.000000 0.000000 0.011113 0.00000