10 20 30 40 50 60 70 80 3KW8 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 01-DEC-09 3KW8
TITLE TWO-DOMAIN LACCASE FROM STREPTOMYCES COELICOLOR AT 2.3 A RESOLUTION
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE COPPER OXIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 42-317; COMPND 5 SYNONYM: LACCASE; COMPND 6 EC: 1.10.3.2; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES COELICOLOR; SOURCE 3 ORGANISM_TAXID: 1902; SOURCE 4 STRAIN: A3(2); SOURCE 5 GENE: SC4C6.22; SOURCE 6 EXPRESSION_SYSTEM: ASPERGILLUS ORYZAE; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 5062; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: TOC1512; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PLAQ029
KEYWDS TWO-DOMAIN LACCASE, OXIDOREDUCTASE, MULTICOPPER BLUE PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR T.SKALOVA,J.DOHNALEK,P.KOLENKO,J.DUSKOVA,A.STEPANKOVA,J.HASEK, AUTHOR 2 L.H.OSTERGAARD,P.R.OSTERGAARD
REVDAT 3 02-MAY-12 3KW8 1 JRNL VERSN REVDAT 2 12-JAN-11 3KW8 1 JRNL REVDAT 1 08-DEC-10 3KW8 0
JRNL AUTH T.SKALOVA,J.DUSKOVA,J.HASEK,A.STEPANKOVA,T.KOVAL, JRNL AUTH 2 L.H.OSTERGAARD,J.DOHNALEK JRNL TITL STRUCTURE OF LACCASE FROM STREPTOMYCES COELICOLOR AFTER JRNL TITL 2 SOAKING WITH POTASSIUM HEXACYANOFERRATE AND AT AN IMPROVED JRNL TITL 3 RESOLUTION OF 2.3 A JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 67 27 2011 JRNL REFN ESSN 1744-3091 JRNL PMID 21206017 JRNL DOI 10.1107/S1744309110046099
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.SKALOVA,J.DOHNALEK,L.H.OSTERGAARD,P.R.OSTERGAARD, REMARK 1 AUTH 2 P.KOLENKO,J.DUSKOVA,A.STEPANKOVA,J.HASEK REMARK 1 TITL THE STRUCTURE OF THE SMALL LACCASE FROM STREPTOMYCES REMARK 1 TITL 2 COELICOLOR REVEALS A LINK BETWEEN LACCASES AND NITRITE REMARK 1 TITL 3 REDUCTASES REMARK 1 REF J.MOL.BIOL. V. 385 1165 2009 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 19063896 REMARK 1 DOI 10.1016/J.JMB.2008.11.024 REMARK 1 REFERENCE 2 REMARK 1 AUTH T.SKALOVA,J.DOHNALEK,L.H.OSTERGAARD,P.R.OSTERGAARD, REMARK 1 AUTH 2 P.KOLENKO,J.DUSKOVA,J.HASEK REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION ANALYSIS REMARK 1 TITL 2 OF THE SMALL LACCASE FROM STREPTOMYCES COELICOLOR REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 63 1077 2007 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 18084099 REMARK 1 DOI 10.1107/S1744309107060721
REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 41054 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1326 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.29 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.35 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2966 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 94 REMARK 3 BIN FREE R VALUE : 0.2320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2121 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 234 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.104 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.052 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.041 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2247 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1547 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3025 ; 1.483 ; 1.936 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3743 ; 0.853 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 272 ; 6.690 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;33.054 ;22.963 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 337 ;12.817 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;19.105 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 304 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2505 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 470 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1342 ; 0.794 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 569 ; 0.199 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2159 ; 1.520 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 905 ; 2.327 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 866 ; 3.798 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS WERE REFINED IN THE RIDING REMARK 3 POSITIONS
REMARK 4 REMARK 4 3KW8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-DEC-09. REMARK 100 THE RCSB ID CODE IS RCSB056524.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42751 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 24.100 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 33.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 24.60 REMARK 200 R MERGE FOR SHELL (I) : 0.60500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3CG8 REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 83.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 7.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40 %(V/V) PEG 550 MONOMETHYL ETHER, REMARK 280 0.1M NACL, 0.1M GLYCINE, 50MM POTASSIUM HEXACYANOFERRATE , PH REMARK 280 9.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 14555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 15555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 16555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 17555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 18555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 19555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 20555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 21555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 22555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 23555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 24555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 88.36150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.36150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 88.36150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 88.36150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 88.36150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 88.36150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 88.36150 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 88.36150 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 88.36150 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 88.36150 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 88.36150 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 88.36150 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 88.36150 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 88.36150 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 88.36150 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 88.36150 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 88.36150 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 88.36150 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 44.18075 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 132.54225 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 132.54225 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 44.18075 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 44.18075 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 44.18075 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 132.54225 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 132.54225 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 44.18075 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 132.54225 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 44.18075 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 132.54225 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 44.18075 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 132.54225 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 132.54225 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 132.54225 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 44.18075 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 132.54225 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 44.18075 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 44.18075 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 44.18075 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 132.54225 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 132.54225 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 44.18075 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 44.18075 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 132.54225 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 132.54225 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 132.54225 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 132.54225 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 44.18075 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 132.54225 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 44.18075 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 132.54225 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 44.18075 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 44.18075 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 44.18075 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 844 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 787 LIES ON A SPECIAL POSITION. REMARK 375 FE FE A 501 LIES ON A SPECIAL POSITION.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 42 REMARK 465 PRO A 43 REMARK 465 ALA A 44
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 197 -118.96 46.50 REMARK 500 REMARK 500 REMARK: NULL
REMARK 600 REMARK 600 HETEROGEN REMARK 600 FE IN THIS STRUCTURE IS A PART OF A HEXACYANOFERRATE ION.
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 401 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 293 ND1 REMARK 620 2 HIS A 231 ND1 108.6 REMARK 620 3 CYS A 288 SG 122.7 127.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 404 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 234 NE2 REMARK 620 2 HOH A 930 O 99.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 403 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 236 NE2 REMARK 620 2 HOH A 701 O 110.9 REMARK 620 3 HIS A 287 NE2 105.1 100.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 402 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 289 NE2 REMARK 620 2 HOH A 701 O 74.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 512 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 O REMARK 620 2 PGE A 612 O1 70.4 REMARK 620 3 PGE A 612 O3 102.8 112.1 REMARK 620 4 HOH A 783 O 77.8 116.4 128.1 REMARK 620 5 PGE A 612 O4 118.7 165.6 56.5 77.4 REMARK 620 6 PGE A 612 O2 73.9 58.1 55.5 151.2 111.9 REMARK 620 N 1 2 3 4 5
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 611 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 612 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 613 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 614
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3CG8 RELATED DB: PDB REMARK 900 LACCASE FROM STREPTOMYCES COELICOLOR AT 2.7 A RESOLUTION
DBREF 3KW8 A 42 317 UNP Q9XAL8 Q9XAL8_STRCO 42 317
SEQRES 1 A 276 ALA PRO ALA GLY GLY GLU VAL ARG HIS LEU LYS MET TYR SEQRES 2 A 276 ALA GLU LYS LEU ALA ASP GLY GLN MET GLY TYR GLY PHE SEQRES 3 A 276 GLU LYS GLY LYS ALA SER VAL PRO GLY PRO LEU ILE GLU SEQRES 4 A 276 VAL ASN GLU GLY ASP THR LEU HIS ILE GLU PHE THR ASN SEQRES 5 A 276 THR MET ASP VAL ARG ALA SER LEU HIS VAL HIS GLY LEU SEQRES 6 A 276 ASP TYR GLU ILE SER SER ASP GLY THR ALA MET ASN LYS SEQRES 7 A 276 SER ASP VAL GLU PRO GLY GLY THR ARG THR TYR THR TRP SEQRES 8 A 276 ARG THR HIS LYS PRO GLY ARG ARG ASP ASP GLY THR TRP SEQRES 9 A 276 ARG PRO GLY SER ALA GLY TYR TRP HIS TYR HIS ASP HIS SEQRES 10 A 276 VAL VAL GLY THR GLU HIS GLY THR GLY GLY ILE ARG ASN SEQRES 11 A 276 GLY LEU TYR GLY PRO VAL ILE VAL ARG ARG LYS GLY ASP SEQRES 12 A 276 VAL LEU PRO ASP ALA THR HIS THR ILE VAL PHE ASN ASP SEQRES 13 A 276 MET THR ILE ASN ASN ARG LYS PRO HIS THR GLY PRO ASP SEQRES 14 A 276 PHE GLU ALA THR VAL GLY ASP ARG VAL GLU ILE VAL MET SEQRES 15 A 276 ILE THR HIS GLY GLU TYR TYR HIS THR PHE HIS MET HIS SEQRES 16 A 276 GLY HIS ARG TRP ALA ASP ASN ARG THR GLY ILE LEU THR SEQRES 17 A 276 GLY PRO ASP ASP PRO SER ARG VAL ILE ASP ASN LYS ILE SEQRES 18 A 276 THR GLY PRO ALA ASP SER PHE GLY PHE GLN ILE ILE ALA SEQRES 19 A 276 GLY GLU GLY VAL GLY ALA GLY ALA TRP MET TYR HIS CYS SEQRES 20 A 276 HIS VAL GLN SER HIS SER ASP MET GLY MET VAL GLY LEU SEQRES 21 A 276 PHE LEU VAL LYS LYS PRO ASP GLY THR ILE PRO GLY TYR SEQRES 22 A 276 GLU PRO HIS
HET CU A 401 1 HET CU A 402 1 HET CU A 403 1 HET CU A 404 1 HET FE A 501 1 HET NA A 512 1 HET NA A 513 1 HET PG4 A 610 13 HET PGE A 611 10 HET PGE A 612 10 HET PGE A 613 10 HET PG4 A 614 13
HETNAM CU COPPER (II) ION HETNAM FE FE (III) ION HETNAM NA SODIUM ION HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PGE TRIETHYLENE GLYCOL
FORMUL 2 CU 4(CU 2+) FORMUL 6 FE FE 3+ FORMUL 7 NA 2(NA 1+) FORMUL 9 PG4 2(C8 H18 O5) FORMUL 10 PGE 3(C6 H14 O4) FORMUL 14 HOH *234(H2 O)
HELIX 1 1 GLU A 109 ASP A 113 5 5 HELIX 2 2 GLY A 165 GLY A 172 1 8 HELIX 3 3 VAL A 290 MET A 296 1 7
SHEET 1 A 4 MET A 63 GLY A 66 0 SHEET 2 A 4 VAL A 48 LYS A 57 -1 N GLU A 56 O GLY A 64 SHEET 3 A 4 THR A 86 ASN A 93 1 O GLU A 90 N LEU A 51 SHEET 4 A 4 THR A 127 ARG A 133 -1 O TYR A 130 N ILE A 89 SHEET 1 B 4 ILE A 79 ASN A 82 0 SHEET 2 B 4 TYR A 174 ARG A 180 1 O ARG A 180 N VAL A 81 SHEET 3 B 4 GLY A 151 HIS A 156 -1 N TRP A 153 O VAL A 177 SHEET 4 B 4 HIS A 102 VAL A 103 -1 N HIS A 102 O HIS A 156 SHEET 1 C 2 GLY A 138 ARG A 139 0 SHEET 2 C 2 TRP A 145 ARG A 146 -1 O ARG A 146 N GLY A 138 SHEET 1 D 4 THR A 199 ILE A 200 0 SHEET 2 D 4 ALA A 189 ASN A 196 -1 N ASN A 196 O THR A 199 SHEET 3 D 4 ARG A 218 HIS A 226 1 O VAL A 222 N ILE A 193 SHEET 4 D 4 SER A 268 ILE A 274 -1 O PHE A 269 N MET A 223 SHEET 1 E 5 PHE A 211 THR A 214 0 SHEET 2 E 5 VAL A 299 LYS A 305 1 O LYS A 305 N ALA A 213 SHEET 3 E 5 GLY A 282 CYS A 288 -1 N TRP A 284 O PHE A 302 SHEET 4 E 5 HIS A 231 MET A 235 -1 N HIS A 234 O HIS A 287 SHEET 5 E 5 ASN A 260 THR A 263 -1 O THR A 263 N HIS A 231 SHEET 1 F 2 TRP A 240 ALA A 241 0 SHEET 2 F 2 VAL A 257 ILE A 258 -1 O ILE A 258 N TRP A 240
LINK ND1 HIS A 293 CU CU A 401 1555 1555 1.93 LINK ND1 HIS A 231 CU CU A 401 1555 1555 1.97 LINK NE2 HIS A 234 CU CU A 404 1555 1555 1.97 LINK NE2 HIS A 236 CU CU A 403 1555 1555 2.03 LINK NE2 HIS A 289 CU CU A 402 1555 1555 2.09 LINK SG CYS A 288 CU CU A 401 1555 1555 2.19 LINK CU CU A 403 O HOH A 701 1555 1555 2.30 LINK NE2 HIS A 287 CU CU A 403 1555 1555 2.37 LINK CU CU A 404 O HOH A 930 1555 1555 2.63 LINK CU CU A 402 O HOH A 701 1555 1555 2.66 LINK O GLU A 80 NA NA A 512 1555 1555 2.79 LINK NA NA A 512 O1 PGE A 612 1555 1555 2.95 LINK NA NA A 512 O3 PGE A 612 1555 1555 2.95 LINK NA NA A 512 O HOH A 783 1555 1555 3.01 LINK NA NA A 512 O4 PGE A 612 1555 1555 3.02 LINK NA NA A 512 O2 PGE A 612 1555 1555 3.17 LINK NA NA A 513 O2 PGE A 613 1555 1555 3.19
CISPEP 1 GLY A 45 GLY A 46 0 -8.88 CISPEP 2 VAL A 74 PRO A 75 0 -2.83 CISPEP 3 GLY A 208 PRO A 209 0 9.17
SITE 1 AC1 4 HIS A 231 CYS A 288 HIS A 293 MET A 298 SITE 1 AC2 4 HIS A 104 HIS A 156 HIS A 289 HOH A 701 SITE 1 AC3 4 HIS A 158 HIS A 236 HIS A 287 HOH A 701 SITE 1 AC4 5 HIS A 102 HIS A 234 HIS A 236 HOH A 701 SITE 2 AC4 5 HOH A 930 SITE 1 AC5 3 GLU A 80 PGE A 612 HOH A 783 SITE 1 AC6 1 PGE A 613 SITE 1 AC7 7 GLN A 62 SER A 73 VAL A 74 ASN A 202 SITE 2 AC7 7 PG4 A 614 HOH A 830 HOH A 932 SITE 1 AC8 3 LYS A 136 ARG A 146 HOH A 798 SITE 1 AC9 3 LEU A 78 GLU A 80 NA A 512 SITE 1 BC1 3 TYR A 314 NA A 513 HOH A 888 SITE 1 BC2 7 ASN A 171 THR A 199 ASN A 202 LYS A 204 SITE 2 BC2 7 PG4 A 610 HOH A 845 HOH A 934
CRYST1 176.723 176.723 176.723 90.00 90.00 90.00 P 43 3 2 24
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.005659 0.000000 0.000000 0.00000
SCALE2 0.000000 0.005659 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005659 0.00000