10 20 30 40 50 60 70 80 3K3W - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 05-OCT-09 3K3W
TITLE THERMOSTABLE PENICILLIN G ACYLASE FROM ALCALIGENES FAECALIS IN TITLE 2 ORTHORHOMBIC FORM
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENICILLIN G ACYLASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 27-222; COMPND 5 SYNONYM: PENICILLIN G AMIDASE PRECURSOR; COMPND 6 EC: 3.5.1.11; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PENICILLIN G ACYLASE; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 266-816; COMPND 12 SYNONYM: PENICILLIN G AMIDASE PRECURSOR; COMPND 13 EC: 3.5.1.11; COMPND 14 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALCALIGENES FAECALIS; SOURCE 3 ORGANISM_TAXID: 511; SOURCE 4 GENE: PAC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PPAAF; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: ALCALIGENES FAECALIS; SOURCE 11 ORGANISM_TAXID: 511; SOURCE 12 GENE: PAC; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PPAAF
KEYWDS PENICILLIN G ACYLASE, HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR N.K.VARSHNEY,R.S.KUMAR,Z.IGNATOVA,E.DODSON,C.G.SURESH
REVDAT 2 14-MAR-12 3K3W 1 JRNL VERSN TITLE REVDAT 1 10-NOV-09 3K3W 0
JRNL AUTH N.K.VARSHNEY,R.S.KUMAR,Z.IGNATOVA,A.PRABHUNE,A.PUNDLE, JRNL AUTH 2 E.DODSON,C.G.SURESH JRNL TITL CRYSTALLIZATION AND X-RAY STRUCTURE ANALYSIS OF A JRNL TITL 2 THERMOSTABLE PENICILLIN G ACYLASE FROM ALCALIGENES FAECALIS JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 68 273 2012 JRNL REFN ESSN 1744-3091 JRNL DOI 10.1107/S1744309111053930
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH V.KASCHE,B.GALUNSKY,Z.IGNATOVA REMARK 1 TITL FRAGMENTS OF PRO-PEPTIDE ACTIVATE MATURE PENICILLIN AMIDASE REMARK 1 TITL 2 OF ALCALIGENES FAECALIS REMARK 1 REF EUR.J.BIOCHEM. V. 270 4721 2003 REMARK 1 REFN ISSN 0014-2956 REMARK 1 PMID 14622260
REMARK 2 REMARK 2 RESOLUTION. 3.31 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 11989 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.283 REMARK 3 R VALUE (WORKING SET) : 0.281 REMARK 3 FREE R VALUE : 0.315 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 613 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.31 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 804 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE SET COUNT : 45 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6000 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 10 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.747 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.690 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 41.193 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.822 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.779 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6122 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8321 ; 0.875 ; 1.929 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 741 ; 4.262 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 323 ;34.744 ;24.087 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 961 ;17.853 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;11.682 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 850 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4869 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3706 ; 0.267 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5957 ; 0.471 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2416 ; 0.072 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2364 ; 0.128 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS
REMARK 4 REMARK 4 3K3W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-OCT-09. REMARK 100 THE RCSB ID CODE IS RCSB055513.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-07 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.514 REMARK 200 MONOCHROMATOR : OSMIC MIRROR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12602 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.306 REMARK 200 RESOLUTION RANGE LOW (A) : 46.823 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.730 REMARK 200 R MERGE (I) : 0.13700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.2300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.07 REMARK 200 R MERGE FOR SHELL (I) : 0.33100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.810 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1GK9 REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG8000, 0.1M TRIS-HCL, PH7.5, REMARK 280 60UL OF B-OCTYL- GLUCOPYRANOSIDE (0.50% W/V), VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 303K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 130.09050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 130.09050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.46450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.00800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.46450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.00800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 130.09050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.46450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.00800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 130.09050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.46450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.00800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLN B 550 REMARK 475 PRO B 551
REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ALA A 196 N C REMARK 480 LYS B 81 CB CG CD CE NZ REMARK 480 SER B 85 OG REMARK 480 LYS B 184 CG CD CE NZ REMARK 480 LEU B 274 CG CD1 CD2 REMARK 480 ILE B 418 CG1 CD1 REMARK 480 ARG B 440 C CB CG CD NE CZ NH1 REMARK 480 ARG B 440 NH2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP B 311 OD1 ASP B 312 1.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 167 -26.71 -145.02 REMARK 500 ALA B 51 54.35 35.51 REMARK 500 TYR B 90 -159.72 -93.32 REMARK 500 PHE B 92 -67.37 -107.46 REMARK 500 ASN B 93 127.00 172.14 REMARK 500 ASN B 231 100.03 37.89 REMARK 500 TRP B 240 44.70 -142.19 REMARK 500 ASN B 241 47.57 74.96 REMARK 500 ASN B 242 -166.75 -119.93 REMARK 500 ALA B 310 0.32 -68.00 REMARK 500 ASP B 312 91.55 -169.43 REMARK 500 SER B 313 21.13 -141.34 REMARK 500 GLU B 328 58.72 -115.55 REMARK 500 VAL B 354 -58.94 -137.03 REMARK 500 ASN B 384 -165.58 59.15 REMARK 500 ALA B 436 31.13 75.78 REMARK 500 MET B 438 -30.86 -38.64 REMARK 500 ALA B 486 -29.46 -31.34 REMARK 500 ALA B 494 66.34 -165.60 REMARK 500 GLU B 514 30.22 -144.74 REMARK 500 GLN B 516 35.28 -147.65 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 552 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 73 OD1 REMARK 620 2 ASP B 73 OD2 55.5 REMARK 620 3 VAL B 75 O 78.7 125.7 REMARK 620 4 ASP B 76 OD1 105.0 76.8 90.4 REMARK 620 5 ASP B 252 OD2 73.5 98.2 94.4 174.5 REMARK 620 6 GLU A 153 OE2 170.8 133.6 94.1 80.5 101.7 REMARK 620 N 1 2 3 4 5
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 552
DBREF 3K3W A 1 196 UNP O34142 O34142_ALCFA 27 222 DBREF 3K3W B 1 551 UNP O34142 O34142_ALCFA 266 816
SEQRES 1 A 196 GLN VAL GLN SER VAL GLU VAL MET ARG ASP SER TYR GLY SEQRES 2 A 196 VAL PRO HIS VAL PHE ALA ASP SER HIS TYR GLY LEU TYR SEQRES 3 A 196 TYR GLY TYR GLY TYR ALA VAL ALA GLN ASP ARG LEU PHE SEQRES 4 A 196 GLN MET ASP MET ALA ARG ARG SER PHE VAL GLY THR THR SEQRES 5 A 196 ALA ALA VAL LEU GLY PRO GLY GLU GLN ASP ALA TYR VAL SEQRES 6 A 196 LYS TYR ASP MET GLN VAL ARG GLN ASN PHE THR PRO ALA SEQRES 7 A 196 SER ILE GLN ARG GLN ILE ALA ALA LEU SER LYS ASP GLU SEQRES 8 A 196 ARG ASP ILE PHE ARG GLY TYR ALA ASP GLY TYR ASN ALA SEQRES 9 A 196 TYR LEU GLU GLN VAL ARG ARG ARG PRO GLU LEU LEU PRO SEQRES 10 A 196 LYS GLU TYR VAL ASP PHE ASP PHE GLN PRO GLU PRO LEU SEQRES 11 A 196 THR ASP PHE ASP VAL VAL MET ILE TRP VAL GLY SER MET SEQRES 12 A 196 ALA ASN ARG PHE SER ASP THR ASN LEU GLU VAL THR ALA SEQRES 13 A 196 LEU ALA MET ARG GLN SER LEU GLU LYS GLN HIS GLY PRO SEQRES 14 A 196 GLU ARG GLY ARG ALA LEU PHE ASP GLU LEU LEU TRP ILE SEQRES 15 A 196 ASN ASP THR THR ALA PRO THR THR VAL PRO ALA PRO ALA SEQRES 16 A 196 ALA SEQRES 1 B 551 SER ASN LEU TRP SER THR ARG PRO GLU ARG VAL GLN GLU SEQRES 2 B 551 GLY SER THR VAL LEU ILE ASN GLY PRO GLN PHE GLY TRP SEQRES 3 B 551 TYR ASN PRO ALA TYR THR TYR GLY ILE GLY LEU HIS GLY SEQRES 4 B 551 ALA GLY PHE ASP VAL VAL GLY ASN THR PRO PHE ALA TYR SEQRES 5 B 551 PRO ILE VAL LEU PHE GLY THR ASN SER GLU ILE ALA TRP SEQRES 6 B 551 GLY ALA THR ALA GLY PRO GLN ASP VAL VAL ASP ILE TYR SEQRES 7 B 551 GLN GLU LYS LEU ASN PRO SER ARG ALA ASP GLN TYR TRP SEQRES 8 B 551 PHE ASN ASN ALA TRP ARG THR MET GLU GLN ARG LYS GLU SEQRES 9 B 551 ARG ILE GLN VAL ARG GLY GLN ALA ASP ARG GLU MET THR SEQRES 10 B 551 ILE TRP ARG THR VAL HIS GLY PRO VAL MET GLN PHE ASP SEQRES 11 B 551 TYR ASP GLN GLY ALA ALA TYR SER LYS LYS ARG SER TRP SEQRES 12 B 551 ASP GLY TYR GLU VAL GLN SER LEU LEU ALA TRP LEU ASN SEQRES 13 B 551 VAL ALA LYS ALA ARG ASN TRP THR GLU PHE LEU ASP GLN SEQRES 14 B 551 ALA SER LYS MET ALA ILE SER ILE ASN TRP TYR TYR ALA SEQRES 15 B 551 ASP LYS HIS GLY ASN ILE GLY TYR VAL SER PRO ALA PHE SEQRES 16 B 551 LEU PRO GLN ARG PRO ALA ASP GLN ASP ILE ARG VAL PRO SEQRES 17 B 551 ALA LYS GLY ASP GLY SER MET GLU TRP LEU GLY ILE LYS SEQRES 18 B 551 SER PHE ASP ALA ILE PRO LYS ALA TYR ASN PRO PRO GLN SEQRES 19 B 551 GLY TYR LEU VAL ASN TRP ASN ASN LYS PRO ALA PRO ASP SEQRES 20 B 551 LYS THR ASN THR ASP THR TYR TYR TRP THR TYR GLY ASP SEQRES 21 B 551 ARG MET ASN GLU LEU VAL SER GLN TYR GLN GLN LYS ASP SEQRES 22 B 551 LEU PHE SER VAL GLN GLU ILE TRP GLU PHE ASN GLN LYS SEQRES 23 B 551 ALA SER TYR SER ASP VAL ASN TRP ARG TYR PHE ARG PRO SEQRES 24 B 551 HIS LEU GLU LYS LEU ALA GLN GLN LEU PRO ALA ASP ASP SEQRES 25 B 551 SER SER LYS ALA ALA LEU THR MET LEU LEU ALA TRP ASP SEQRES 26 B 551 GLY MET GLU GLN ASP GLN GLY GLY GLN ASN ALA GLY PRO SEQRES 27 B 551 ALA ARG VAL LEU PHE LYS THR TRP LEU GLU GLU MET TYR SEQRES 28 B 551 LYS GLN VAL LEU MET PRO VAL VAL PRO GLU SER HIS ARG SEQRES 29 B 551 ALA MET TYR SER GLN THR GLY PHE ALA THR GLN GLN GLY SEQRES 30 B 551 PRO ASN PRO GLY SER ILE ASN LEU SER MET GLY THR LYS SEQRES 31 B 551 VAL LEU LEU ARG ALA LEU VAL LEU GLU ALA HIS PRO ASP SEQRES 32 B 551 PRO LYS ARG VAL ASN VAL PHE GLY GLU ARG SER SER GLN SEQRES 33 B 551 GLU ILE MET HIS THR ALA LEU GLN ASN ALA GLN ALA ARG SEQRES 34 B 551 LEU SER GLN GLU GLN GLY ALA GLN MET ALA ARG TRP THR SEQRES 35 B 551 MET PRO THR SER VAL HIS ARG PHE SER ASP LYS ASN PHE SEQRES 36 B 551 THR GLY THR PRO GLN THR MET PRO GLY ASN THR PHE ALA SEQRES 37 B 551 PHE THR GLY TYR GLN ASN ARG GLY THR GLU ASN ASN ARG SEQRES 38 B 551 VAL VAL PHE ASP ALA LYS GLY VAL GLU PHE CYS ASP ALA SEQRES 39 B 551 MET PRO PRO GLY GLN SER GLY PHE THR ASP ARG ASN GLY SEQRES 40 B 551 VAL ARG SER PRO HIS TYR GLU ASP GLN LEU LYS LEU TYR SEQRES 41 B 551 GLU ASN PHE GLU CYS LYS THR MET ASP VAL THR HIS ALA SEQRES 42 B 551 ASP ILE ARG ARG ASN ALA GLN SER SER THR MET LEU LEU SEQRES 43 B 551 ILE GLN PRO GLN PRO
HET CA B 552 1
HETNAM CA CALCIUM ION
FORMUL 3 CA CA 2+ FORMUL 4 HOH *10(H2 O)
HELIX 1 1 SER A 21 ARG A 37 1 17 HELIX 2 2 ARG A 37 GLY A 50 1 14 HELIX 3 3 ALA A 63 ASN A 74 1 12 HELIX 4 4 THR A 76 ALA A 86 1 11 HELIX 5 5 SER A 88 GLU A 107 1 20 HELIX 6 6 ARG A 112 LEU A 116 5 5 HELIX 7 7 PRO A 117 ASP A 124 1 8 HELIX 8 8 THR A 131 MET A 143 1 13 HELIX 9 9 LEU A 152 GLU A 164 1 13 HELIX 10 10 LEU A 175 LEU A 180 1 6 HELIX 11 11 TYR B 146 ASN B 156 1 11 HELIX 12 12 ASN B 162 SER B 171 1 10 HELIX 13 13 SER B 222 ILE B 226 5 5 HELIX 14 14 MET B 262 SER B 267 1 6 HELIX 15 15 SER B 276 GLU B 282 1 7 HELIX 16 16 ASN B 284 TYR B 289 1 6 HELIX 17 17 ASN B 293 LEU B 308 1 16 HELIX 18 18 SER B 314 THR B 319 1 6 HELIX 19 19 PRO B 338 GLN B 353 1 16 HELIX 20 20 HIS B 363 SER B 368 1 6 HELIX 21 21 SER B 386 HIS B 401 1 16 HELIX 22 22 SER B 414 GLU B 433 1 20 HELIX 23 23 GLN B 437 TRP B 441 5 5 HELIX 24 24 LEU B 517 ASN B 522 1 6 HELIX 25 25 THR B 531 ALA B 539 1 9
SHEET 1 A10 LYS B 228 TYR B 230 0 SHEET 2 A10 ILE B 188 VAL B 191 -1 N TYR B 190 O ALA B 229 SHEET 3 A10 ILE B 177 ASP B 183 -1 N TRP B 179 O VAL B 191 SHEET 4 A10 ILE B 63 ALA B 69 -1 N ALA B 64 O ALA B 182 SHEET 5 A10 PHE B 57 THR B 59 -1 N GLY B 58 O TRP B 65 SHEET 6 A10 PHE B 42 PRO B 49 -1 N ASN B 47 O PHE B 57 SHEET 7 A10 THR B 32 GLY B 39 -1 N GLY B 39 O PHE B 42 SHEET 8 A10 PRO A 15 PHE A 18 1 N VAL A 17 O GLY B 36 SHEET 9 A10 GLN A 3 ARG A 9 -1 N MET A 8 O HIS A 16 SHEET 10 A10 SER B 541 ILE B 547 -1 O LEU B 545 N VAL A 5 SHEET 1 B 6 TYR B 236 ASN B 239 0 SHEET 2 B 6 ASN B 2 THR B 6 -1 N SER B 5 O LEU B 237 SHEET 3 B 6 VAL B 17 GLY B 21 -1 O ILE B 19 N TRP B 4 SHEET 4 B 6 ASN B 480 ASP B 485 -1 O ASN B 480 N ASN B 20 SHEET 5 B 6 GLY B 488 ASP B 493 -1 O GLY B 488 N ASP B 485 SHEET 6 B 6 LYS B 526 MET B 528 -1 O LYS B 526 N ASP B 493 SHEET 1 C 4 VAL B 126 ASP B 130 0 SHEET 2 C 4 ALA B 135 ARG B 141 -1 O TYR B 137 N GLN B 128 SHEET 3 C 4 VAL B 75 LYS B 81 -1 N TYR B 78 O SER B 138 SHEET 4 C 4 ALA B 209 LYS B 210 1 O ALA B 209 N GLN B 79 SHEET 1 D 2 GLN B 89 TRP B 91 0 SHEET 2 D 2 TRP B 96 THR B 98 -1 O ARG B 97 N TYR B 90 SHEET 1 E 2 GLU B 100 ILE B 106 0 SHEET 2 E 2 ARG B 114 ARG B 120 -1 O ILE B 118 N ARG B 102 SHEET 1 F 2 ASP B 330 GLN B 331 0 SHEET 2 F 2 GLN B 334 ASN B 335 -1 O GLN B 334 N GLN B 331 SHEET 1 G 2 ARG B 449 PHE B 450 0 SHEET 2 G 2 PHE B 467 ALA B 468 -1 O PHE B 467 N PHE B 450
SSBOND 1 CYS B 492 CYS B 525 1555 1555 2.02
LINK OD1 ASP B 73 CA CA B 552 1555 1555 2.33 LINK OD2 ASP B 73 CA CA B 552 1555 1555 2.38 LINK O VAL B 75 CA CA B 552 1555 1555 2.40 LINK OD1 ASP B 76 CA CA B 552 1555 1555 2.73 LINK OD2 ASP B 252 CA CA B 552 1555 1555 2.44 LINK OE2 GLU A 153 CA CA B 552 1555 1555 2.00
CISPEP 1 GLY A 57 PRO A 58 0 0.03 CISPEP 2 GLY A 59 GLU A 60 0 0.02 CISPEP 3 GLY A 168 PRO A 169 0 0.00 CISPEP 4 ASN B 28 PRO B 29 0 -0.42 CISPEP 5 ASN B 93 ASN B 94 0 0.01 CISPEP 6 GLY B 377 PRO B 378 0 -3.39 CISPEP 7 THR B 470 GLY B 471 0 -5.11 CISPEP 8 PRO B 496 PRO B 497 0 -0.02
SITE 1 AC1 5 GLU A 153 ASP B 73 VAL B 75 ASP B 76 SITE 2 AC1 5 ASP B 252
CRYST1 72.929 86.016 260.181 90.00 90.00 90.00 C 2 2 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.013712 0.000000 0.000000 0.00000
SCALE2 0.000000 0.011626 0.000000 0.00000
SCALE3 0.000000 0.000000 0.003843 0.00000