10 20 30 40 50 60 70 80 3JQ3 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 05-SEP-09 3JQ3
TITLE CRYSTAL STRUCTURE OF LOMBRICINE KINASE, COMPLEXED WITH SUBSTRATE ADP
COMPND MOL_ID: 1; COMPND 2 MOLECULE: LOMBRICINE KINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.3.5; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: URECHIS CAUPO; SOURCE 3 ORGANISM_COMMON: INNKEEPER WORM; SOURCE 4 ORGANISM_TAXID: 6431; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: TUNER (DE3)PLACI; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETBLUE-1
KEYWDS MIXED ALPHA / BETA, KINASE, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR D.J.BUSH,O.KIRILLOVA,S.A.CLARK,F.FABIOLA,T.SOMASUNDARAM,M.S.CHAPMAN
REVDAT 2 18-APR-12 3JQ3 1 JRNL VERSN REVDAT 1 15-SEP-10 3JQ3 0
JRNL AUTH D.J.BUSH,O.KIRILLOVA,S.A.CLARK,O.DAVULCU,F.FABIOLA,Q.XIE, JRNL AUTH 2 T.SOMASUNDARAM,W.R.ELLINGTON,M.S.CHAPMAN JRNL TITL THE STRUCTURE OF LOMBRICINE KINASE: IMPLICATIONS FOR JRNL TITL 2 PHOSPHAGEN KINASE CONFORMATIONAL CHANGES. JRNL REF J.BIOL.CHEM. V. 286 9338 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21212263 JRNL DOI 10.1074/JBC.M110.202796
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH W.R.ELLINGTON,J.BUSH REMARK 1 TITL CLONING AND EXPRESSION OF A LOMBRICINE KINASE FROM AN REMARK 1 TITL 2 ECHIUROID WORM: INSIGHTS INTO STRUCTURAL CORRELATES OF REMARK 1 TITL 3 SUBSTRATE SPECIFICITY REMARK 1 REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 291 939 2002 REMARK 1 REFN ISSN 0006-291X REMARK 1 PMID 11866456 REMARK 1 DOI 10.1006/BBRC.2002.6539
REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 13186 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.660 REMARK 3 FREE R VALUE TEST SET COUNT : 482 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 2.8600 - 2.5000 0.99 0 151 0.2180 0.3290 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 34.97 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.36300 REMARK 3 B22 (A**2) : -1.19300 REMARK 3 B33 (A**2) : -1.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.030 NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : 15.400 NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain A and resseq 3:93 REMARK 3 ORIGIN FOR THE GROUP (A): -4.8717 -2.5394 19.7806 REMARK 3 T TENSOR REMARK 3 T11: 0.1711 T22: 0.1466 REMARK 3 T33: 0.1214 T12: -0.0220 REMARK 3 T13: 0.0231 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 1.7973 L22: 0.5816 REMARK 3 L33: 2.2385 L12: 0.9783 REMARK 3 L13: -0.9985 L23: 0.1400 REMARK 3 S TENSOR REMARK 3 S11: 0.0042 S12: 0.2736 S13: 0.1506 REMARK 3 S21: -0.1636 S22: 0.0581 S23: -0.0094 REMARK 3 S31: -0.2091 S32: -0.3181 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain A and resseq 94:279 REMARK 3 ORIGIN FOR THE GROUP (A): 20.3799 7.4891 21.7857 REMARK 3 T TENSOR REMARK 3 T11: 0.0638 T22: 0.1009 REMARK 3 T33: 0.1362 T12: 0.0033 REMARK 3 T13: 0.0166 T23: -0.0309 REMARK 3 L TENSOR REMARK 3 L11: 0.7383 L22: 0.9102 REMARK 3 L33: 1.7347 L12: 0.7145 REMARK 3 L13: -0.6212 L23: -0.7910 REMARK 3 S TENSOR REMARK 3 S11: -0.0269 S12: -0.0418 S13: -0.0389 REMARK 3 S21: -0.0064 S22: 0.0145 S23: -0.1088 REMARK 3 S31: 0.0029 S32: 0.1326 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: chain A and resseq 280:307 REMARK 3 ORIGIN FOR THE GROUP (A): 9.6281 25.0891 4.3729 REMARK 3 T TENSOR REMARK 3 T11: 0.2197 T22: 0.2176 REMARK 3 T33: 0.2532 T12: -0.0439 REMARK 3 T13: -0.0586 T23: 0.0593 REMARK 3 L TENSOR REMARK 3 L11: 0.1079 L22: 0.0084 REMARK 3 L33: 0.3935 L12: -0.0636 REMARK 3 L13: 0.0934 L23: 0.0045 REMARK 3 S TENSOR REMARK 3 S11: -0.1213 S12: 0.0671 S13: 0.1265 REMARK 3 S21: -0.0773 S22: 0.1426 S23: 0.4226 REMARK 3 S31: 0.0087 S32: -0.5887 S33: 0.0023 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: chain A and resseq 308:318 REMARK 3 ORIGIN FOR THE GROUP (A): 10.1549 26.3523 16.7007 REMARK 3 T TENSOR REMARK 3 T11: 0.5309 T22: 0.3357 REMARK 3 T33: 0.6171 T12: 0.0440 REMARK 3 T13: 0.0229 T23: 0.0948 REMARK 3 L TENSOR REMARK 3 L11: 0.1362 L22: -0.0140 REMARK 3 L33: 0.0811 L12: -0.0674 REMARK 3 L13: -0.0067 L23: 0.0077 REMARK 3 S TENSOR REMARK 3 S11: -0.2395 S12: -0.2554 S13: -0.9828 REMARK 3 S21: 0.2538 S22: -0.0719 S23: 0.7603 REMARK 3 S31: 0.2852 S32: -0.1616 S33: -0.0018 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: chain A and resseq 319:366 REMARK 3 ORIGIN FOR THE GROUP (A): 13.9898 20.2914 0.2178 REMARK 3 T TENSOR REMARK 3 T11: 0.2684 T22: 0.1923 REMARK 3 T33: 0.1390 T12: -0.1138 REMARK 3 T13: -0.0308 T23: 0.0327 REMARK 3 L TENSOR REMARK 3 L11: 0.3644 L22: 1.0399 REMARK 3 L33: 0.1241 L12: -0.0805 REMARK 3 L13: -0.2995 L23: -0.2041 REMARK 3 S TENSOR REMARK 3 S11: -0.1434 S12: 0.0973 S13: 0.1191 REMARK 3 S21: -0.3210 S22: 0.2331 S23: 0.4762 REMARK 3 S31: -0.0355 S32: -0.1689 S33: 0.0029 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: chain A and resseq 400:400 REMARK 3 ORIGIN FOR THE GROUP (A): 15.1053 18.7393 17.7012 REMARK 3 T TENSOR REMARK 3 T11: 0.8050 T22: 0.2925 REMARK 3 T33: 0.7676 T12: -0.1097 REMARK 3 T13: 0.0689 T23: -0.0210 REMARK 3 L TENSOR REMARK 3 L11: -0.1798 L22: -0.0984 REMARK 3 L33: 0.0216 L12: -0.1186 REMARK 3 L13: -0.0306 L23: 0.0638 REMARK 3 S TENSOR REMARK 3 S11: -0.0784 S12: -0.2145 S13: -0.0183 REMARK 3 S21: 0.2540 S22: -0.3077 S23: 0.2506 REMARK 3 S31: 0.0150 S32: -0.2180 S33: -0.0048 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 3JQ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-SEP-09. REMARK 100 THE RCSB ID CODE IS RCSB055016.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99997 REMARK 200 MONOCHROMATOR : SILICON REMARK 200 OPTICS : DOUBLE FOCUSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL REMARK 200 DATA SCALING SOFTWARE : HKL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13213 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.17400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.230 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: HOMOLOGY MODEL BUILT FROM CREATINE KINASE, 1QK1 REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN AT 30 MG/ML IN 50MM REMARK 280 TAUROCYAMINE, 40MM ADP & 5MM MGCL2, MIXED 1:1 WITH AND REMARK 280 EQUILIBRATED AGAINST 15MM BISTRIS, 0.2M NANO3, 1MM DTT, 20% W/V REMARK 280 PEG 3350MME, PH 5.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.56100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.56100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.84600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.99300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.84600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.99300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.56100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.84600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 38.99300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.56100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.84600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 38.99300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 70.56100 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 462 LIES ON A SPECIAL POSITION.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 16 -21.74 78.26 REMARK 500 GLU A 110 4.07 -69.40 REMARK 500 GLU A 218 -85.23 -85.14 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 400
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3JPZ RELATED DB: PDB REMARK 900 LOMBRICINE KINASE WITHOUT SUBSTRATES
DBREF 3JQ3 A 1 366 UNP Q8T6T7 Q8T6T7_URECA 1 366
SEQRES 1 A 366 MET ALA PHE GLN ASN ASP ALA LYS ALA ASN PHE PRO ASP SEQRES 2 A 366 TYR ALA ASN HIS GLY CYS VAL VAL GLY ARG HIS LEU ASN SEQRES 3 A 366 PHE GLU MET TYR GLN ARG LEU PHE GLY LYS LYS THR ALA SEQRES 4 A 366 HIS GLY VAL THR VAL ASP LYS VAL ILE GLN PRO SER VAL SEQRES 5 A 366 ASP ASN PHE GLY ASN CYS ILE GLY LEU ILE ALA GLY ASP SEQRES 6 A 366 GLU GLU SER TYR GLU VAL PHE LYS GLU LEU PHE ASP ALA SEQRES 7 A 366 VAL ILE ASN GLU LYS HIS LYS GLY PHE GLY PRO ASN ASP SEQRES 8 A 366 SER GLN PRO ALA PRO ASP LEU ASP ALA SER LYS LEU VAL SEQRES 9 A 366 GLY GLY GLN PHE ASP GLU LYS TYR VAL LYS SER CYS ARG SEQRES 10 A 366 ILE ARG THR GLY ARG GLY ILE ARG GLY LEU CYS TYR PRO SEQRES 11 A 366 PRO SER CYS THR ARG GLY GLU ARG ARG GLU VAL GLU ARG SEQRES 12 A 366 VAL ILE THR THR ALA LEU ALA GLY LEU SER GLY ASP LEU SEQRES 13 A 366 SER GLY THR TYR TYR PRO LEU SER LYS MET THR PRO GLU SEQRES 14 A 366 GLN GLU ASN GLN LEU ILE ALA ASP HIS PHE LEU PHE GLN SEQRES 15 A 366 LYS PRO THR GLY HIS LEU MET VAL ASN SER ALA SER VAL SEQRES 16 A 366 ARG ASP TRP PRO ASP ALA ARG GLY ILE TRP HIS ASN ASN SEQRES 17 A 366 GLU LYS THR PHE LEU ILE TRP ILE ASN GLU GLU ASP HIS SEQRES 18 A 366 MET ARG VAL ILE SER MET GLN LYS GLY GLY ASN VAL LYS SEQRES 19 A 366 ALA VAL PHE GLU ARG PHE GLY ARG GLY LEU ASN ALA ILE SEQRES 20 A 366 ALA GLU GLN MET LYS LYS ASN GLY ARG GLU TYR MET TRP SEQRES 21 A 366 ASN GLN ARG LEU GLY TYR LEU CYS ALA CYS PRO SER ASN SEQRES 22 A 366 LEU GLY THR GLY LEU ARG ALA SER VAL HIS VAL GLN LEU SEQRES 23 A 366 HIS GLN LEU SER LYS HIS PRO LYS PHE GLU ASP ILE VAL SEQRES 24 A 366 VAL ALA LEU GLN LEU GLN LYS ARG GLY THR GLY GLY GLU SEQRES 25 A 366 HIS THR ALA ALA VAL ASP ASP VAL TYR ASP ILE SER ASN SEQRES 26 A 366 ALA ALA ARG LEU LYS LYS SER GLU ARG GLU PHE VAL GLN SEQRES 27 A 366 LEU LEU ILE ASP GLY VAL LYS LYS LEU ILE ASP MET GLU SEQRES 28 A 366 GLN ALA LEU GLU ALA GLY LYS SER ILE ASP ASP LEU ILE SEQRES 29 A 366 PRO ALA
HET ADP A 400 27
HETNAM ADP ADENOSINE-5'-DIPHOSPHATE
FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 HOH *168(H2 O)
HELIX 1 1 ASP A 6 PHE A 11 1 6 HELIX 2 2 VAL A 20 HIS A 24 5 5 HELIX 3 3 ASN A 26 PHE A 34 1 9 HELIX 4 4 THR A 43 ASN A 54 1 12 HELIX 5 5 GLU A 67 PHE A 72 1 6 HELIX 6 6 PHE A 72 HIS A 84 1 13 HELIX 7 7 ASP A 99 LEU A 103 5 5 HELIX 8 8 THR A 134 ALA A 150 1 17 HELIX 9 9 GLY A 151 LEU A 152 5 2 HELIX 10 10 SER A 153 LEU A 156 5 4 HELIX 11 11 SER A 164 MET A 166 5 3 HELIX 12 12 THR A 167 ASP A 177 1 11 HELIX 13 13 GLY A 186 SER A 192 1 7 HELIX 14 14 ASN A 232 LYS A 253 1 22 HELIX 15 15 CYS A 270 LEU A 274 5 5 HELIX 16 16 GLN A 288 HIS A 292 5 5 HELIX 17 17 LYS A 294 LEU A 302 1 9 HELIX 18 18 ALA A 316 ASP A 318 5 3 HELIX 19 19 SER A 332 ALA A 356 1 25
SHEET 1 A 8 GLY A 158 PRO A 162 0 SHEET 2 A 8 GLY A 203 ASN A 207 -1 O ILE A 204 N TYR A 161 SHEET 3 A 8 PHE A 212 ILE A 216 -1 O ILE A 214 N TRP A 205 SHEET 4 A 8 MET A 222 LYS A 229 -1 O ILE A 225 N LEU A 213 SHEET 5 A 8 VAL A 113 ARG A 122 -1 N CYS A 116 O GLN A 228 SHEET 6 A 8 ARG A 279 GLN A 285 -1 O SER A 281 N ARG A 117 SHEET 7 A 8 VAL A 320 ASN A 325 -1 O TYR A 321 N VAL A 284 SHEET 8 A 8 LEU A 304 ARG A 307 -1 N GLN A 305 O SER A 324 SHEET 1 B 2 TRP A 260 ASN A 261 0 SHEET 2 B 2 GLY A 265 TYR A 266 -1 O GLY A 265 N ASN A 261
CISPEP 1 TRP A 198 PRO A 199 0 2.66
SITE 1 AC1 17 SER A 115 ARG A 117 ARG A 119 HIS A 178 SITE 2 AC1 17 ARG A 223 ARG A 279 SER A 281 VAL A 282 SITE 3 AC1 17 HIS A 283 ARG A 307 THR A 309 GLY A 310 SITE 4 AC1 17 GLY A 311 GLU A 312 ASP A 322 HOH A 465 SITE 5 AC1 17 HOH A 466
CRYST1 67.692 77.986 141.122 90.00 90.00 90.00 C 2 2 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.014773 0.000000 0.000000 0.00000
SCALE2 0.000000 0.012823 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007086 0.00000