10 20 30 40 50 60 70 80 3JPZ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 04-SEP-09 3JPZ
TITLE CRYSTAL STRUCTURE OF LOMBRICINE KINASE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: LOMBRICINE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.3.5; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: URECHIS CAUPO; SOURCE 3 ORGANISM_COMMON: INNKEEPER WORM; SOURCE 4 ORGANISM_TAXID: 6431; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: TUNER (DE3)PLACI; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETBLUE-1
KEYWDS MIXED ALPHA / BETA, KINASE, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR D.J.BUSH,O.KIRILLOVA,S.A.CLARK,F.FABIOLA,T.SOMASUNDARAM,M.S.CHAPMAN
REVDAT 2 18-APR-12 3JPZ 1 JRNL VERSN REVDAT 1 15-SEP-10 3JPZ 0
JRNL AUTH D.J.BUSH,O.KIRILLOVA,S.A.CLARK,O.DAVULCU,F.FABIOLA,Q.XIE, JRNL AUTH 2 T.SOMASUNDARAM,W.R.ELLINGTON,M.S.CHAPMAN JRNL TITL THE STRUCTURE OF LOMBRICINE KINASE: IMPLICATIONS FOR JRNL TITL 2 PHOSPHAGEN KINASE CONFORMATIONAL CHANGES. JRNL REF J.BIOL.CHEM. V. 286 9338 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21212263 JRNL DOI 10.1074/JBC.M110.202796
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH W.R.ELLINGTON,J.BUSH REMARK 1 TITL CLONING AND EXPRESSION OF A LOMBRICINE KINASE FROM AN REMARK 1 TITL 2 ECHIUROID WORM: INSIGHTS INTO STRUCTURAL CORRELATES OF REMARK 1 TITL 3 SUBSTRATE SPECIFICITY REMARK 1 REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 291 939 2002 REMARK 1 REFN ISSN 0006-291X REMARK 1 PMID 11866456 REMARK 1 DOI 10.1006/BBRC.2002.6539
REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 50441 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2560 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.4900 - 5.1010 0.94 2718 151 0.2260 0.2640 REMARK 3 2 5.1010 - 4.0530 0.97 2777 126 0.1710 0.2320 REMARK 3 3 4.0530 - 3.5420 0.95 2685 140 0.1780 0.2640 REMARK 3 4 3.5420 - 3.2180 0.98 2770 156 0.1820 0.2750 REMARK 3 5 3.2180 - 2.9880 0.99 2729 144 0.1910 0.2730 REMARK 3 6 2.9880 - 2.8120 0.98 2758 137 0.1910 0.2800 REMARK 3 7 2.8120 - 2.6710 0.98 2735 175 0.1920 0.2600 REMARK 3 8 2.6710 - 2.5550 0.97 2704 151 0.1940 0.2860 REMARK 3 9 2.5550 - 2.4570 0.98 2753 134 0.2000 0.2810 REMARK 3 10 2.4570 - 2.3720 0.96 2669 154 0.2060 0.2750 REMARK 3 11 2.3720 - 2.2980 0.96 2686 141 0.2130 0.3060 REMARK 3 12 2.2980 - 2.2320 0.94 2646 126 0.2140 0.2890 REMARK 3 13 2.2320 - 2.1730 0.93 2581 132 0.2210 0.2800 REMARK 3 14 2.1730 - 2.1200 0.93 2607 138 0.2410 0.3180 REMARK 3 15 2.1200 - 2.0720 0.93 2583 138 0.2470 0.3430 REMARK 3 16 2.0720 - 2.0280 0.88 2429 147 0.2690 0.3630 REMARK 3 17 2.0280 - 1.9870 0.91 2540 144 0.2600 0.3040 REMARK 3 18 1.9870 - 1.9500 0.90 2511 126 0.2540 0.3490 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.45 REMARK 3 B_SOL : 54.79 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.40100 REMARK 3 B22 (A**2) : -0.44300 REMARK 3 B33 (A**2) : 0.84400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.17800 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 11610 REMARK 3 ANGLE : 0.711 20899 REMARK 3 CHIRALITY : 0.052 861 REMARK 3 PLANARITY : 0.003 1857 REMARK 3 DIHEDRAL : 14.241 2946 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain A and resseq 3:93 REMARK 3 ORIGIN FOR THE GROUP (A): 14.4435 3.8278 15.8722 REMARK 3 T TENSOR REMARK 3 T11: 0.2108 T22: 0.0894 REMARK 3 T33: 0.0549 T12: -0.0364 REMARK 3 T13: 0.0576 T23: -0.0275 REMARK 3 L TENSOR REMARK 3 L11: 0.0984 L22: 0.4641 REMARK 3 L33: 0.6645 L12: -0.2097 REMARK 3 L13: -0.1531 L23: 0.0406 REMARK 3 S TENSOR REMARK 3 S11: 0.1307 S12: -0.0412 S13: 0.0181 REMARK 3 S21: -0.1118 S22: -0.0201 S23: -0.0160 REMARK 3 S31: -0.3794 S32: 0.0654 S33: 0.0780 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain A and resseq 94:279 REMARK 3 ORIGIN FOR THE GROUP (A): 16.3977 -13.8231 36.1626 REMARK 3 T TENSOR REMARK 3 T11: 0.1182 T22: 0.2292 REMARK 3 T33: 0.0927 T12: 0.0283 REMARK 3 T13: 0.0099 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.3369 L22: 0.0954 REMARK 3 L33: 1.4445 L12: -0.1045 REMARK 3 L13: -0.7697 L23: 0.1452 REMARK 3 S TENSOR REMARK 3 S11: -0.0851 S12: -0.2165 S13: -0.0107 REMARK 3 S21: 0.0733 S22: 0.0477 S23: 0.0394 REMARK 3 S31: 0.1293 S32: 0.4765 S33: -0.0025 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: chain A and resseq 280:307 REMARK 3 ORIGIN FOR THE GROUP (A): -9.4496 -9.4445 37.1553 REMARK 3 T TENSOR REMARK 3 T11: 0.1611 T22: 0.0738 REMARK 3 T33: 0.1198 T12: 0.0091 REMARK 3 T13: -0.0104 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.2057 L22: 0.0170 REMARK 3 L33: 0.5255 L12: 0.1021 REMARK 3 L13: -0.5366 L23: 0.0239 REMARK 3 S TENSOR REMARK 3 S11: 0.0649 S12: 0.2169 S13: -0.0613 REMARK 3 S21: -0.0269 S22: -0.0214 S23: -0.0314 REMARK 3 S31: -0.0179 S32: -0.1172 S33: -0.0035 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: chain A and resseq 308:318 REMARK 3 ORIGIN FOR THE GROUP (A): -4.7546 -18.9976 31.0728 REMARK 3 T TENSOR REMARK 3 T11: 0.4289 T22: 0.1180 REMARK 3 T33: 0.1784 T12: 0.0369 REMARK 3 T13: 0.0991 T23: 0.0281 REMARK 3 L TENSOR REMARK 3 L11: 0.0292 L22: -0.0052 REMARK 3 L33: -0.0023 L12: 0.0030 REMARK 3 L13: -0.0242 L23: 0.0093 REMARK 3 S TENSOR REMARK 3 S11: -0.0242 S12: 0.1043 S13: 0.0147 REMARK 3 S21: 0.1519 S22: 0.1841 S23: 0.1873 REMARK 3 S31: 0.1289 S32: -0.0306 S33: 0.0006 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: chain A and resseq 319:366 REMARK 3 ORIGIN FOR THE GROUP (A): -6.4969 -5.2027 42.6912 REMARK 3 T TENSOR REMARK 3 T11: 0.2142 T22: 0.0667 REMARK 3 T33: 0.1108 T12: -0.0072 REMARK 3 T13: 0.0063 T23: -0.0341 REMARK 3 L TENSOR REMARK 3 L11: -0.0173 L22: 0.1380 REMARK 3 L33: 0.2454 L12: -0.0576 REMARK 3 L13: 0.0051 L23: -0.0138 REMARK 3 S TENSOR REMARK 3 S11: 0.0009 S12: -0.0023 S13: -0.0124 REMARK 3 S21: -0.0214 S22: 0.0136 S23: 0.0380 REMARK 3 S31: -0.1373 S32: -0.0546 S33: 0.4600 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: chain B and resseq 2:93 REMARK 3 ORIGIN FOR THE GROUP (A): -33.7506 9.3707 -7.4432 REMARK 3 T TENSOR REMARK 3 T11: 0.1115 T22: 0.3329 REMARK 3 T33: 0.0893 T12: -0.0466 REMARK 3 T13: 0.0107 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 0.5175 L22: 0.2004 REMARK 3 L33: 1.3881 L12: 0.1759 REMARK 3 L13: -0.4406 L23: -0.3993 REMARK 3 S TENSOR REMARK 3 S11: -0.0551 S12: 0.2576 S13: 0.0734 REMARK 3 S21: -0.0551 S22: -0.0400 S23: -0.0188 REMARK 3 S31: 0.2668 S32: -0.5858 S33: -0.0072 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: chain B and resseq 94:279 REMARK 3 ORIGIN FOR THE GROUP (A): -16.0770 14.6759 12.0534 REMARK 3 T TENSOR REMARK 3 T11: 0.1077 T22: 0.1065 REMARK 3 T33: 0.1219 T12: 0.0014 REMARK 3 T13: -0.0051 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: -0.1621 L22: 0.3981 REMARK 3 L33: 1.1027 L12: -0.1199 REMARK 3 L13: -0.1369 L23: -0.1816 REMARK 3 S TENSOR REMARK 3 S11: 0.0411 S12: 0.0712 S13: -0.0111 REMARK 3 S21: 0.0112 S22: -0.0021 S23: 0.0004 REMARK 3 S31: -0.0611 S32: -0.0026 S33: 0.0002 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: chain B and resseq 280:307 REMARK 3 ORIGIN FOR THE GROUP (A): -15.0318 -12.1655 12.6612 REMARK 3 T TENSOR REMARK 3 T11: 0.2047 T22: 0.0673 REMARK 3 T33: 0.1088 T12: 0.0170 REMARK 3 T13: -0.0408 T23: -0.0546 REMARK 3 L TENSOR REMARK 3 L11: 0.2737 L22: 0.6278 REMARK 3 L33: 0.4117 L12: -0.1735 REMARK 3 L13: 0.4167 L23: -0.2862 REMARK 3 S TENSOR REMARK 3 S11: 0.0912 S12: 0.2381 S13: -0.1800 REMARK 3 S21: -0.2343 S22: -0.0914 S23: 0.2391 REMARK 3 S31: 0.2222 S32: 0.0794 S33: -0.1863 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: chain B and resseq 308:318 REMARK 3 ORIGIN FOR THE GROUP (A): -6.8137 -5.6035 6.4398 REMARK 3 T TENSOR REMARK 3 T11: 0.4992 T22: 0.3228 REMARK 3 T33: 0.4044 T12: 0.1199 REMARK 3 T13: -0.0507 T23: -0.0963 REMARK 3 L TENSOR REMARK 3 L11: 0.0057 L22: -0.0376 REMARK 3 L33: -0.0079 L12: 0.0089 REMARK 3 L13: -0.0113 L23: 0.0192 REMARK 3 S TENSOR REMARK 3 S11: -0.0206 S12: 0.0485 S13: 0.0090 REMARK 3 S21: -0.2095 S22: 0.0182 S23: 0.1480 REMARK 3 S31: -0.1886 S32: -0.0483 S33: 0.0004 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: chain B and resseq 319:364 REMARK 3 ORIGIN FOR THE GROUP (A): -19.1785 -9.6031 18.6220 REMARK 3 T TENSOR REMARK 3 T11: 0.2228 T22: 0.0849 REMARK 3 T33: 0.1740 T12: -0.0168 REMARK 3 T13: -0.0003 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.4054 L22: 0.1367 REMARK 3 L33: 0.3740 L12: -0.0726 REMARK 3 L13: -0.0594 L23: 0.2123 REMARK 3 S TENSOR REMARK 3 S11: -0.0402 S12: 0.1390 S13: -0.1733 REMARK 3 S21: 0.0454 S22: -0.0211 S23: 0.0615 REMARK 3 S31: 0.1782 S32: -0.1110 S33: -0.0381 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 3JPZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-SEP-09. REMARK 100 THE RCSB ID CODE IS RCSB055012.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9764 REMARK 200 MONOCHROMATOR : FOCUSING RH-COATED SI MIRRORS REMARK 200 OPTICS : DOUBLE FOCUSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL REMARK 200 DATA SCALING SOFTWARE : HKL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69201 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.13100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.37800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: LOMBRICINE KINASE ADP COMPLEX, 3JQ3 REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN AT 30 MG/ML, MIXED 1:1 WITH REMARK 280 AND EQUILIBRATED AGAINST 15MM BISTRIS, 0.2M NANO3, 1MM DTT, 20% REMARK 280 W/V PEG 3350MME, PH 6.8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.77500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 PRO B 365 REMARK 465 ALA B 366
REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 331 CA CB CG CD CE NZ REMARK 480 GLU B 28 N CA C O CB CG CD REMARK 480 GLU B 28 OE1 OE2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 57 96.92 -63.13 REMARK 500 PHE A 87 88.51 -158.46 REMARK 500 GLU A 218 -98.05 -78.73 REMARK 500 ARG A 328 -23.91 -141.35 REMARK 500 LYS A 330 -23.14 91.73 REMARK 500 GLU B 218 -95.62 -82.55 REMARK 500 HIS B 313 53.18 34.91 REMARK 500 LYS B 330 -12.84 85.17 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 658 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 659 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 655 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 656 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 657
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3JQ3 RELATED DB: PDB
DBREF 3JPZ A 1 366 UNP Q8T6T7 Q8T6T7_URECA 1 366 DBREF 3JPZ B 1 366 UNP Q8T6T7 Q8T6T7_URECA 1 366
SEQRES 1 A 366 MET ALA PHE GLN ASN ASP ALA LYS ALA ASN PHE PRO ASP SEQRES 2 A 366 TYR ALA ASN HIS GLY CYS VAL VAL GLY ARG HIS LEU ASN SEQRES 3 A 366 PHE GLU MET TYR GLN ARG LEU PHE GLY LYS LYS THR ALA SEQRES 4 A 366 HIS GLY VAL THR VAL ASP LYS VAL ILE GLN PRO SER VAL SEQRES 5 A 366 ASP ASN PHE GLY ASN CYS ILE GLY LEU ILE ALA GLY ASP SEQRES 6 A 366 GLU GLU SER TYR GLU VAL PHE LYS GLU LEU PHE ASP ALA SEQRES 7 A 366 VAL ILE ASN GLU LYS HIS LYS GLY PHE GLY PRO ASN ASP SEQRES 8 A 366 SER GLN PRO ALA PRO ASP LEU ASP ALA SER LYS LEU VAL SEQRES 9 A 366 GLY GLY GLN PHE ASP GLU LYS TYR VAL LYS SER CYS ARG SEQRES 10 A 366 ILE ARG THR GLY ARG GLY ILE ARG GLY LEU CYS TYR PRO SEQRES 11 A 366 PRO SER CYS THR ARG GLY GLU ARG ARG GLU VAL GLU ARG SEQRES 12 A 366 VAL ILE THR THR ALA LEU ALA GLY LEU SER GLY ASP LEU SEQRES 13 A 366 SER GLY THR TYR TYR PRO LEU SER LYS MET THR PRO GLU SEQRES 14 A 366 GLN GLU ASN GLN LEU ILE ALA ASP HIS PHE LEU PHE GLN SEQRES 15 A 366 LYS PRO THR GLY HIS LEU MET VAL ASN SER ALA SER VAL SEQRES 16 A 366 ARG ASP TRP PRO ASP ALA ARG GLY ILE TRP HIS ASN ASN SEQRES 17 A 366 GLU LYS THR PHE LEU ILE TRP ILE ASN GLU GLU ASP HIS SEQRES 18 A 366 MET ARG VAL ILE SER MET GLN LYS GLY GLY ASN VAL LYS SEQRES 19 A 366 ALA VAL PHE GLU ARG PHE GLY ARG GLY LEU ASN ALA ILE SEQRES 20 A 366 ALA GLU GLN MET LYS LYS ASN GLY ARG GLU TYR MET TRP SEQRES 21 A 366 ASN GLN ARG LEU GLY TYR LEU CYS ALA CYS PRO SER ASN SEQRES 22 A 366 LEU GLY THR GLY LEU ARG ALA SER VAL HIS VAL GLN LEU SEQRES 23 A 366 HIS GLN LEU SER LYS HIS PRO LYS PHE GLU ASP ILE VAL SEQRES 24 A 366 VAL ALA LEU GLN LEU GLN LYS ARG GLY THR GLY GLY GLU SEQRES 25 A 366 HIS THR ALA ALA VAL ASP ASP VAL TYR ASP ILE SER ASN SEQRES 26 A 366 ALA ALA ARG LEU LYS LYS SER GLU ARG GLU PHE VAL GLN SEQRES 27 A 366 LEU LEU ILE ASP GLY VAL LYS LYS LEU ILE ASP MET GLU SEQRES 28 A 366 GLN ALA LEU GLU ALA GLY LYS SER ILE ASP ASP LEU ILE SEQRES 29 A 366 PRO ALA SEQRES 1 B 366 MET ALA PHE GLN ASN ASP ALA LYS ALA ASN PHE PRO ASP SEQRES 2 B 366 TYR ALA ASN HIS GLY CYS VAL VAL GLY ARG HIS LEU ASN SEQRES 3 B 366 PHE GLU MET TYR GLN ARG LEU PHE GLY LYS LYS THR ALA SEQRES 4 B 366 HIS GLY VAL THR VAL ASP LYS VAL ILE GLN PRO SER VAL SEQRES 5 B 366 ASP ASN PHE GLY ASN CYS ILE GLY LEU ILE ALA GLY ASP SEQRES 6 B 366 GLU GLU SER TYR GLU VAL PHE LYS GLU LEU PHE ASP ALA SEQRES 7 B 366 VAL ILE ASN GLU LYS HIS LYS GLY PHE GLY PRO ASN ASP SEQRES 8 B 366 SER GLN PRO ALA PRO ASP LEU ASP ALA SER LYS LEU VAL SEQRES 9 B 366 GLY GLY GLN PHE ASP GLU LYS TYR VAL LYS SER CYS ARG SEQRES 10 B 366 ILE ARG THR GLY ARG GLY ILE ARG GLY LEU CYS TYR PRO SEQRES 11 B 366 PRO SER CYS THR ARG GLY GLU ARG ARG GLU VAL GLU ARG SEQRES 12 B 366 VAL ILE THR THR ALA LEU ALA GLY LEU SER GLY ASP LEU SEQRES 13 B 366 SER GLY THR TYR TYR PRO LEU SER LYS MET THR PRO GLU SEQRES 14 B 366 GLN GLU ASN GLN LEU ILE ALA ASP HIS PHE LEU PHE GLN SEQRES 15 B 366 LYS PRO THR GLY HIS LEU MET VAL ASN SER ALA SER VAL SEQRES 16 B 366 ARG ASP TRP PRO ASP ALA ARG GLY ILE TRP HIS ASN ASN SEQRES 17 B 366 GLU LYS THR PHE LEU ILE TRP ILE ASN GLU GLU ASP HIS SEQRES 18 B 366 MET ARG VAL ILE SER MET GLN LYS GLY GLY ASN VAL LYS SEQRES 19 B 366 ALA VAL PHE GLU ARG PHE GLY ARG GLY LEU ASN ALA ILE SEQRES 20 B 366 ALA GLU GLN MET LYS LYS ASN GLY ARG GLU TYR MET TRP SEQRES 21 B 366 ASN GLN ARG LEU GLY TYR LEU CYS ALA CYS PRO SER ASN SEQRES 22 B 366 LEU GLY THR GLY LEU ARG ALA SER VAL HIS VAL GLN LEU SEQRES 23 B 366 HIS GLN LEU SER LYS HIS PRO LYS PHE GLU ASP ILE VAL SEQRES 24 B 366 VAL ALA LEU GLN LEU GLN LYS ARG GLY THR GLY GLY GLU SEQRES 25 B 366 HIS THR ALA ALA VAL ASP ASP VAL TYR ASP ILE SER ASN SEQRES 26 B 366 ALA ALA ARG LEU LYS LYS SER GLU ARG GLU PHE VAL GLN SEQRES 27 B 366 LEU LEU ILE ASP GLY VAL LYS LYS LEU ILE ASP MET GLU SEQRES 28 B 366 GLN ALA LEU GLU ALA GLY LYS SER ILE ASP ASP LEU ILE SEQRES 29 B 366 PRO ALA
HET NO3 A 658 4 HET NO3 A 659 4 HET NO3 B 655 4 HET NO3 B 656 4 HET NO3 B 657 4
HETNAM NO3 NITRATE ION
FORMUL 3 NO3 5(N O3 1-) FORMUL 8 HOH *881(H2 O)
HELIX 1 1 ASP A 6 PHE A 11 1 6 HELIX 2 2 CYS A 19 LEU A 25 1 7 HELIX 3 3 ASN A 26 PHE A 34 1 9 HELIX 4 4 THR A 43 ASN A 54 1 12 HELIX 5 5 GLU A 67 PHE A 72 1 6 HELIX 6 6 PHE A 72 HIS A 84 1 13 HELIX 7 7 ASP A 99 LEU A 103 5 5 HELIX 8 8 THR A 134 ALA A 150 1 17 HELIX 9 9 GLY A 151 LEU A 152 5 2 HELIX 10 10 SER A 153 LEU A 156 5 4 HELIX 11 11 SER A 164 MET A 166 5 3 HELIX 12 12 THR A 167 ASP A 177 1 11 HELIX 13 13 GLY A 186 SER A 192 1 7 HELIX 14 14 ASN A 232 LYS A 253 1 22 HELIX 15 15 CYS A 270 LEU A 274 5 5 HELIX 16 16 GLN A 288 HIS A 292 5 5 HELIX 17 17 LYS A 294 LEU A 302 1 9 HELIX 18 18 ALA A 316 ASP A 318 5 3 HELIX 19 19 SER A 332 ALA A 356 1 25 HELIX 20 20 ASP B 6 PHE B 11 1 6 HELIX 21 21 CYS B 19 LEU B 25 1 7 HELIX 22 22 ASN B 26 PHE B 34 1 9 HELIX 23 23 THR B 43 ASN B 54 1 12 HELIX 24 24 GLU B 67 PHE B 72 1 6 HELIX 25 25 PHE B 72 HIS B 84 1 13 HELIX 26 26 ASP B 99 LEU B 103 5 5 HELIX 27 27 THR B 134 GLY B 151 1 18 HELIX 28 28 LEU B 152 LEU B 156 5 5 HELIX 29 29 SER B 164 MET B 166 5 3 HELIX 30 30 THR B 167 ASP B 177 1 11 HELIX 31 31 GLY B 186 SER B 192 1 7 HELIX 32 32 ASN B 232 LYS B 252 1 21 HELIX 33 33 LYS B 253 GLY B 255 5 3 HELIX 34 34 CYS B 270 LEU B 274 5 5 HELIX 35 35 GLN B 288 HIS B 292 5 5 HELIX 36 36 LYS B 294 LEU B 302 1 9 HELIX 37 37 ALA B 316 ASP B 318 5 3 HELIX 38 38 SER B 332 ALA B 356 1 25
SHEET 1 A 8 GLY A 158 PRO A 162 0 SHEET 2 A 8 GLY A 203 ASN A 207 -1 O ILE A 204 N TYR A 161 SHEET 3 A 8 PHE A 212 ILE A 216 -1 O ILE A 214 N TRP A 205 SHEET 4 A 8 MET A 222 LYS A 229 -1 O ILE A 225 N LEU A 213 SHEET 5 A 8 VAL A 113 ARG A 122 -1 N ARG A 122 O MET A 222 SHEET 6 A 8 ARG A 279 GLN A 285 -1 O SER A 281 N ARG A 117 SHEET 7 A 8 VAL A 320 ASN A 325 -1 O TYR A 321 N VAL A 284 SHEET 8 A 8 LEU A 304 ARG A 307 -1 N ARG A 307 O ASP A 322 SHEET 1 B 2 TRP A 260 ASN A 261 0 SHEET 2 B 2 GLY A 265 TYR A 266 -1 O GLY A 265 N ASN A 261 SHEET 1 C 8 GLY B 158 PRO B 162 0 SHEET 2 C 8 GLY B 203 ASN B 207 -1 O ILE B 204 N TYR B 161 SHEET 3 C 8 PHE B 212 ILE B 216 -1 O ILE B 214 N TRP B 205 SHEET 4 C 8 MET B 222 LYS B 229 -1 O ARG B 223 N TRP B 215 SHEET 5 C 8 VAL B 113 ARG B 122 -1 N ILE B 118 O SER B 226 SHEET 6 C 8 ARG B 279 GLN B 285 -1 O HIS B 283 N LYS B 114 SHEET 7 C 8 VAL B 320 ASN B 325 -1 O ILE B 323 N VAL B 282 SHEET 8 C 8 LEU B 304 GLY B 308 -1 N ARG B 307 O ASP B 322 SHEET 1 D 2 TRP B 260 ASN B 261 0 SHEET 2 D 2 GLY B 265 TYR B 266 -1 O GLY B 265 N ASN B 261
CISPEP 1 TRP A 198 PRO A 199 0 0.83 CISPEP 2 TRP B 198 PRO B 199 0 -1.33
SITE 1 AC1 4 ASP A 53 ASN A 54 HIS A 187 ASN A 191 SITE 1 AC2 8 PRO A 50 ASN A 54 CYS A 58 GLY A 60 SITE 2 AC2 8 HIS A 187 LEU A 188 HOH A 498 HOH A 502 SITE 1 AC3 2 SER B 153 ARG B 242 SITE 1 AC4 8 ASN B 54 CYS B 58 HIS B 187 LEU B 188 SITE 2 AC4 8 HOH B 407 HOH B 456 HOH B 581 HOH B 629 SITE 1 AC5 4 ASP B 53 ASN B 54 HIS B 187 ASN B 191
CRYST1 74.340 59.550 85.850 90.00 105.04 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.013452 0.000000 0.003614 0.00000
SCALE2 0.000000 0.016793 0.000000 0.00000
SCALE3 0.000000 0.000000 0.012061 0.00000