10 20 30 40 50 60 70 80 3IDQ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 21-JUL-09 3IDQ
TITLE CRYSTAL STRUCTURE OF S. CEREVISIAE GET3 AT 3.7 ANGSTROM TITLE 2 RESOLUTION
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATPASE GET3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ARSENICAL PUMP-DRIVING ATPASE, ARSENITE- COMPND 5 TRANSLOCATING ATPASE, ARSENICAL RESISTANCE ATPASE, COMPND 6 ARSENITE-TRANSPORTING ATPASE, GOLGI TO ER TRAFFIC PROTEIN COMPND 7 3; COMPND 8 EC: 3.6.3.16; COMPND 9 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: GET3, ARR4, YDL100C, D2371; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET33B
KEYWDS HYDROLASE, DEVIANT WALKER A MOTIF, ARSENICAL RESISTANCE, KEYWDS 2 ATP-BINDING, CYTOPLASM, ENDOPLASMIC RETICULUM, ER-GOLGI KEYWDS 3 TRANSPORT, GOLGI APPARATUS, NUCLEOTIDE-BINDING, TRANSPORT
EXPDTA X-RAY DIFFRACTION
AUTHOR C.J.M.SULOWAY,J.W.CHARTRON,M.ZASLAVER,W.M.CLEMONS JR.
REVDAT 2 20-OCT-09 3IDQ 1 JRNL REVDAT 1 25-AUG-09 3IDQ 0
JRNL AUTH C.J.SULOWAY,J.W.CHARTRON,M.ZASLAVER,W.M.CLEMONS JRNL TITL MODEL FOR EUKARYOTIC TAIL-ANCHORED PROTEIN BINDING JRNL TITL 2 BASED ON THE STRUCTURE OF GET3 JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 14849 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19706470 JRNL DOI 10.1073/PNAS.0907522106
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 3.70 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.4_62) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 7936 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.285 REMARK 3 R VALUE (WORKING SET) : 0.283 REMARK 3 FREE R VALUE : 0.335 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.510 REMARK 3 FREE R VALUE TEST SET COUNT : 358 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.0570 - 5.3360 0.99 2595 125 0.2970 0.3510 REMARK 3 2 5.3360 - 4.2360 1.00 2502 118 0.2270 0.2810 REMARK 3 3 4.2360 - 3.7010 1.00 2481 115 0.3200 0.3630 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 150.00 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.540 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 182.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -33.78600 REMARK 3 B22 (A**2) : -33.78600 REMARK 3 B33 (A**2) : 65.13300 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2222 REMARK 3 ANGLE : 1.147 2990 REMARK 3 CHIRALITY : 0.080 339 REMARK 3 PLANARITY : 0.004 381 REMARK 3 DIHEDRAL : 23.634 1349 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES DESIGNATED 365-369 ARE PART REMARK 3 OF THE HISTIDINE TAG USED IN PURIFICATION. DENSITY CONNECTING REMARK 3 THESE RESIDUES TO THE REST OF THE PROTEIN IN CHAIN A WAS NOT REMARK 3 OBSERVED, THEREFORE IT IS POSSIBLE THEY ARE EXTENDING FROM A REMARK 3 SYMMETRY RELATED COPY.
REMARK 4 REMARK 4 3IDQ COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUL-09. REMARK 100 THE RCSB ID CODE IS RCSB054283.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN-COOLED DOUBLE REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7954 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.701 REMARK 200 RESOLUTION RANGE LOW (A) : 47.054 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.62700 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1IBG REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 1.6 M AMMONIUM REMARK 280 SULFATE, PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 57.66000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 33.29002 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 93.70367 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 57.66000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 33.29002 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 93.70367 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 57.66000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 33.29002 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 93.70367 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 57.66000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 33.29002 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 93.70367 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 57.66000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 33.29002 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 93.70367 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 57.66000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 33.29002 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 93.70367 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 66.58003 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 187.40733 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 66.58003 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 187.40733 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 66.58003 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 187.40733 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 66.58003 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 187.40733 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 66.58003 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 187.40733 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 66.58003 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 187.40733 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -158.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NI NI A 370 LIES ON A SPECIAL POSITION.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 LEU A 3 REMARK 465 THR A 4 REMARK 465 VAL A 5 REMARK 465 GLU A 6 REMARK 465 PRO A 7 REMARK 465 PRO A 90 REMARK 465 SER A 91 REMARK 465 ALA A 92 REMARK 465 ALA A 93 REMARK 465 LEU A 94 REMARK 465 LYS A 95 REMARK 465 ASP A 96 REMARK 465 MET A 97 REMARK 465 ASN A 98 REMARK 465 ASP A 99 REMARK 465 MET A 100 REMARK 465 ALA A 101 REMARK 465 VAL A 102 REMARK 465 SER A 103 REMARK 465 ARG A 104 REMARK 465 ALA A 105 REMARK 465 ASN A 106 REMARK 465 ASN A 107 REMARK 465 ASN A 108 REMARK 465 GLY A 109 REMARK 465 SER A 110 REMARK 465 ASP A 111 REMARK 465 GLY A 112 REMARK 465 GLN A 113 REMARK 465 GLY A 114 REMARK 465 ASP A 115 REMARK 465 ASP A 116 REMARK 465 LEU A 117 REMARK 465 GLY A 118 REMARK 465 SER A 119 REMARK 465 LEU A 120 REMARK 465 LEU A 121 REMARK 465 GLN A 122 REMARK 465 GLY A 123 REMARK 465 GLY A 124 REMARK 465 ALA A 125 REMARK 465 LEU A 126 REMARK 465 ALA A 127 REMARK 465 ASP A 128 REMARK 465 LEU A 129 REMARK 465 THR A 130 REMARK 465 GLY A 131 REMARK 465 SER A 132 REMARK 465 ILE A 133 REMARK 465 PRO A 134 REMARK 465 GLY A 135 REMARK 465 ILE A 136 REMARK 465 GLY A 191 REMARK 465 GLU A 192 REMARK 465 ILE A 193 REMARK 465 THR A 194 REMARK 465 ASN A 195 REMARK 465 LYS A 196 REMARK 465 LEU A 197 REMARK 465 GLY A 198 REMARK 465 PRO A 199 REMARK 465 MET A 200 REMARK 465 LEU A 201 REMARK 465 ASN A 202 REMARK 465 SER A 203 REMARK 465 PHE A 204 REMARK 465 MET A 205 REMARK 465 GLY A 206 REMARK 465 ALA A 207 REMARK 465 GLY A 208 REMARK 465 ASN A 209 REMARK 465 VAL A 210 REMARK 465 ASP A 211 REMARK 465 ILE A 212 REMARK 465 SER A 213 REMARK 465 GLY A 214 REMARK 465 LYS A 215 REMARK 465 LEU A 216 REMARK 465 GLU A 278 REMARK 465 ASN A 279 REMARK 465 ASP A 280 REMARK 465 GLN A 281 REMARK 465 GLU A 282 REMARK 465 HIS A 283 REMARK 465 CYS A 317 REMARK 465 ALA A 318 REMARK 465 GLY A 319 REMARK 465 VAL A 357 REMARK 465 PRO A 358 REMARK 465 ARG A 359 REMARK 465 GLY A 360 REMARK 465 SER A 361 REMARK 465 LEU A 362 REMARK 465 GLU A 363 REMARK 465 HIS A 364
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 48 CG OD1 ND2 REMARK 470 ARG A 291 CG CD NE CZ NH1 NH2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 288 NE2 HIS A 368 1.83 REMARK 500 SG CYS A 288 CE1 HIS A 368 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 15 102.15 -42.15 REMARK 500 LYS A 26 110.16 -35.34 REMARK 500 VAL A 29 50.00 -64.55 REMARK 500 LYS A 49 55.59 136.45 REMARK 500 GLN A 50 113.66 -33.30 REMARK 500 ASP A 57 108.43 -38.00 REMARK 500 HIS A 60 37.50 74.76 REMARK 500 LYS A 72 12.12 -69.67 REMARK 500 ARG A 75 85.03 166.17 REMARK 500 ASN A 82 57.11 -153.72 REMARK 500 LEU A 83 111.45 -172.98 REMARK 500 PHE A 142 -84.28 -60.14 REMARK 500 LYS A 189 43.97 -158.53 REMARK 500 LEU A 235 -53.34 -141.54 REMARK 500 VAL A 239 117.27 -161.76 REMARK 500 GLU A 245 132.77 -34.46 REMARK 500 ASP A 263 43.75 74.04 REMARK 500 VAL A 266 -23.91 -149.05 REMARK 500 ASN A 267 72.83 -54.64 REMARK 500 SER A 268 131.52 175.72 REMARK 500 PHE A 276 -148.71 -131.68 REMARK 500 CYS A 285 8.32 -62.37 REMARK 500 ALA A 290 -8.67 -57.18 REMARK 500 PRO A 315 -140.69 -61.87 REMARK 500 ARG A 322 -32.85 -140.71 REMARK 500 ASN A 335 -78.32 -79.21 REMARK 500 GLU A 337 108.79 -35.39 REMARK 500 PRO A 340 -6.13 -52.28 REMARK 500 THR A 342 -75.94 -64.37 REMARK 500 ASP A 343 -57.74 -19.19 REMARK 500 ASP A 352 -1.65 -58.13 REMARK 500 HIS A 366 -149.99 -57.27 REMARK 500 HIS A 367 141.28 144.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 160 ASP A 161 -144.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (11X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 HIS A 369 25.0 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 371 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 288 SG REMARK 620 2 HIS A 368 NE2 40.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 370 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 367 NE2 REMARK 620 2 HIS A 369 NE2 124.4 REMARK 620 N 1
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 370 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 371
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1IBG RELATED DB: PDB REMARK 900 THE HOMOLOG IN ASPERGILLUS FUMIGATUS
DBREF 3IDQ A 1 354 UNP Q12154 GET3_YEAST 1 354
SEQADV 3IDQ GLY A 355 UNP Q12154 EXPRESSION TAG SEQADV 3IDQ LEU A 356 UNP Q12154 EXPRESSION TAG SEQADV 3IDQ VAL A 357 UNP Q12154 EXPRESSION TAG SEQADV 3IDQ PRO A 358 UNP Q12154 EXPRESSION TAG SEQADV 3IDQ ARG A 359 UNP Q12154 EXPRESSION TAG SEQADV 3IDQ GLY A 360 UNP Q12154 EXPRESSION TAG SEQADV 3IDQ SER A 361 UNP Q12154 EXPRESSION TAG SEQADV 3IDQ LEU A 362 UNP Q12154 EXPRESSION TAG SEQADV 3IDQ GLU A 363 UNP Q12154 EXPRESSION TAG SEQADV 3IDQ HIS A 364 UNP Q12154 EXPRESSION TAG SEQADV 3IDQ HIS A 365 UNP Q12154 EXPRESSION TAG SEQADV 3IDQ HIS A 366 UNP Q12154 EXPRESSION TAG SEQADV 3IDQ HIS A 367 UNP Q12154 EXPRESSION TAG SEQADV 3IDQ HIS A 368 UNP Q12154 EXPRESSION TAG SEQADV 3IDQ HIS A 369 UNP Q12154 EXPRESSION TAG
SEQRES 1 A 369 MET ASP LEU THR VAL GLU PRO ASN LEU HIS SER LEU ILE SEQRES 2 A 369 THR SER THR THR HIS LYS TRP ILE PHE VAL GLY GLY LYS SEQRES 3 A 369 GLY GLY VAL GLY LYS THR THR SER SER CYS SER ILE ALA SEQRES 4 A 369 ILE GLN MET ALA LEU SER GLN PRO ASN LYS GLN PHE LEU SEQRES 5 A 369 LEU ILE SER THR ASP PRO ALA HIS ASN LEU SER ASP ALA SEQRES 6 A 369 PHE GLY GLU LYS PHE GLY LYS ASP ALA ARG LYS VAL THR SEQRES 7 A 369 GLY MET ASN ASN LEU SER CYS MET GLU ILE ASP PRO SER SEQRES 8 A 369 ALA ALA LEU LYS ASP MET ASN ASP MET ALA VAL SER ARG SEQRES 9 A 369 ALA ASN ASN ASN GLY SER ASP GLY GLN GLY ASP ASP LEU SEQRES 10 A 369 GLY SER LEU LEU GLN GLY GLY ALA LEU ALA ASP LEU THR SEQRES 11 A 369 GLY SER ILE PRO GLY ILE ASP GLU ALA LEU SER PHE MET SEQRES 12 A 369 GLU VAL MET LYS HIS ILE LYS ARG GLN GLU GLN GLY GLU SEQRES 13 A 369 GLY GLU THR PHE ASP THR VAL ILE PHE ASP THR ALA PRO SEQRES 14 A 369 THR GLY HIS THR LEU ARG PHE LEU GLN LEU PRO ASN THR SEQRES 15 A 369 LEU SER LYS LEU LEU GLU LYS PHE GLY GLU ILE THR ASN SEQRES 16 A 369 LYS LEU GLY PRO MET LEU ASN SER PHE MET GLY ALA GLY SEQRES 17 A 369 ASN VAL ASP ILE SER GLY LYS LEU ASN GLU LEU LYS ALA SEQRES 18 A 369 ASN VAL GLU THR ILE ARG GLN GLN PHE THR ASP PRO ASP SEQRES 19 A 369 LEU THR THR PHE VAL CYS VAL CYS ILE SER GLU PHE LEU SEQRES 20 A 369 SER LEU TYR GLU THR GLU ARG LEU ILE GLN GLU LEU ILE SEQRES 21 A 369 SER TYR ASP MET ASP VAL ASN SER ILE ILE VAL ASN GLN SEQRES 22 A 369 LEU LEU PHE ALA GLU ASN ASP GLN GLU HIS ASN CYS LYS SEQRES 23 A 369 ARG CYS GLN ALA ARG TRP LYS MET GLN LYS LYS TYR LEU SEQRES 24 A 369 ASP GLN ILE ASP GLU LEU TYR GLU ASP PHE HIS VAL VAL SEQRES 25 A 369 LYS MET PRO LEU CYS ALA GLY GLU ILE ARG GLY LEU ASN SEQRES 26 A 369 ASN LEU THR LYS PHE SER GLN PHE LEU ASN LYS GLU TYR SEQRES 27 A 369 ASN PRO ILE THR ASP GLY LYS VAL ILE TYR GLU LEU GLU SEQRES 28 A 369 ASP LYS GLU GLY LEU VAL PRO ARG GLY SER LEU GLU HIS SEQRES 29 A 369 HIS HIS HIS HIS HIS
HET NI A 370 1 HET ZN A 371 1
HETNAM NI NICKEL (II) ION HETNAM ZN ZINC ION
FORMUL 2 NI NI 2+ FORMUL 3 ZN ZN 2+
HELIX 1 1 LEU A 9 SER A 15 1 7 HELIX 2 2 GLY A 30 GLN A 46 1 17 HELIX 3 3 HIS A 60 GLY A 67 1 8 HELIX 4 4 ASP A 137 GLU A 156 1 20 HELIX 5 5 GLY A 171 LEU A 177 5 7 HELIX 6 6 GLN A 178 LYS A 189 1 12 HELIX 7 7 ASN A 217 ASP A 232 1 16 HELIX 8 8 GLU A 245 ASP A 263 1 19 HELIX 9 9 CYS A 285 TYR A 306 1 22 HELIX 10 10 GLY A 323 LYS A 336 1 14 HELIX 11 11 ILE A 341 ASP A 352 1 12
SHEET 1 A 7 LEU A 83 GLU A 87 0 SHEET 2 A 7 PHE A 51 SER A 55 1 N LEU A 53 O SER A 84 SHEET 3 A 7 VAL A 163 ASP A 166 1 O ASP A 166 N ILE A 54 SHEET 4 A 7 TRP A 20 GLY A 24 1 N ILE A 21 O PHE A 165 SHEET 5 A 7 THR A 236 ILE A 243 1 O THR A 237 N TRP A 20 SHEET 6 A 7 ILE A 269 ASN A 272 1 O ILE A 270 N CYS A 240 SHEET 7 A 7 VAL A 311 LYS A 313 1 O VAL A 312 N VAL A 271
LINK SG CYS A 288 ZN ZN A 371 1555 1555 2.83 LINK NE2 HIS A 367 NI NI A 370 1555 1555 2.47 LINK NE2 HIS A 368 ZN ZN A 371 1555 1555 2.23 LINK NE2 HIS A 369 NI NI A 370 1555 1555 2.22
SITE 1 AC1 2 HIS A 367 HIS A 369 SITE 1 AC2 4 CYS A 285 CYS A 288 HIS A 366 HIS A 368
CRYST1 115.320 115.320 281.111 90.00 90.00 120.00 H 3 2 18
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008672 0.005007 0.000000 0.00000
SCALE2 0.000000 0.010013 0.000000 0.00000
SCALE3 0.000000 0.000000 0.003557 0.00000